AMCG00016423 (fa76b,fam76b,LOC106603374)


Basic Information

Item Value
gene id AMCG00016423
gene name fa76b,fam76b,LOC106603374
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19427455 ~ 19437740 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016423
aaggaagaaaaaaaaaaagaaaaaagctggGAAGAGCTTAAAACTCcctttaaagatttttttgtatactgtaGGTTATTTGTAATGGAACAAAATATCGCGATTTAATGTAGTTTCTTTGTAACAACTTTAGCACCAGAAGAGCGGGTTTGAATTGCACttgtgtggtttgtttctgtccagatacatttatatccaatatacacacacagctacatttttcttttttgtgtttgtggatgAGAATGGCTACGACGGCCCTGTACGCGTGTACGAAGTGTAACCAGCGCTATCCGTTTGAGGAGCTATCGCAGGGACAGCAGCTGTGCAAGGAATGTCGAATAGCACACCCTATTGTGAAATGCACCTTCTGTAGGTCGGAATTTCAGCAGGAAAGcaaaacaaacacaatttgtaAGAAGTGTGCTCAGAATGTGAAGCAGTTTGGCACGcCCAAACCTTGCCAGTACTGTAACATAATTGCAGCCTTCATCGGGACCAAGTGTCAGCGGTGCACAAACTCAGAGAAGAAGTACGGCCCTCCACAGGCGTGCGAGCAGTGCAAGCAGCAGTGCGCCTTCGATCGCAAGGAGGAAGGCAGGCGAAAGGTGGACGGGAAGCTGCTGTGCTGGCTCTGCACTCTGTCGTACCGCCGCGTCCTGCAGAAGACCAAGGAGCAGAGGAAAGGCTTGAGCTCCTCACACTCCAACTCCTCTCTGACAGAAAAGGACCAGCACCATTCCagacaccaccaccaccatcaccaccaccggCACAGTAGCTCCCACCACAAACTGAGCAGCCTCAGCCCAGAGCAGGACCAGGGACTGTGGAAACAGAGCCATAAATCTTCTTCAATCCAGAATGAAACTCCAAAGAAGAAACCAAAACTAGAAACAAAGCCATCAAATGGAGATAGTAGTTCTATTAACCAGTCAATGGACTCTGGAGGAACAGATAACTTCATCCTCATCAGCCAGTTGAAGGAGGAAGTGATGTCACTGAAAAGACTACTGCAGCAGCGAGATCAGACGATATTAGAGAAGGATAAGAAGCTTACTGAACTTAAAGCTGATTTTCAGTATCAGGAATCTAATATGAGAGTGAAAATGAACAACATGGAGAAAGCACATAAAGAAGCCATGGAGCAACAGCAGGCAAAGAATCGCGAACTGCTTAAGCAAGTTGCTGCTCTCTCAAAAGGTAAAAAGTTTGAGAAGGCTGGAAGCACACTGCTGTCTCCTtgagaatgaaaacacacaagaaaccTCACATGAAAGTGTAATGTTGATTCAACTATTAACACTGTGAAGACCTGAACTTATattgatttttacttttattttatttttttatttccttcattcAGGATCACAGTAAATATCTTACTAGTATACCCACGCATACGGGGAGGTTTTAGGCGATGTAATGCATCTTTTAACtttggaaacaaagaaaacactatGGCAATAAAACCAGCTTCTCAGAACGGAACTACTTGAAGTgtgactgaaaacatttttcatgtagAGTTGCCTTCATTTCAGTAAATTGTCAAGTATtcatctattattttttaatcttttgcaTTTTGGAGGGTTTGTGCTAGTTGTTATTTTACACTGAGTACCTAAACCCCTGCATAACACGTAACAcgtcttttaaatataaataagcaaatgaaCCAACTGCAGTCTGGTATTTTTCGGATGGCACCAGGTAATAAGTGATGTGTGTTGtgggctttttttattttttattttatttgataaatagtgaacataaaacattttcctgcaggttttatttttatttattcagaatttttaataaaaacaaaacaaaaatgcagaacaGTGGGTGTGAttgcatatatattgttttattttatttttaatcacgCTAATGATATATTTGAAACTCTCCTGGAGGCAATGCAAATGTTATCTTGTATACAACATAGAGCAGGGTCCTGAAGATTGTCTTGTGGGGGTGGCCCTTACCagttcaggtgtttttttttattcaaccagcaaatcttgcatttttaagtaaattagGACATGTAAGTATAATAATGTAACACAATTGTGATCCTTATATATGTGATCGGCTGCTGGTTACATGGAAAGTGAAttctggggggggggcatgTGGCGGGAGCTTGGTGAAACACTGGCATAGAGCTAACATCTCACCTTAATTGTAGCTTAGAACTGTGTGTAAATATGTCCGTTGCTTCTGCTGATGAAGCGATGAAGCCAGactaagaatgctttaaaactcCAGTCCTGTGTGGTAAAACCTTCATGTATTCTTATTCCCGGGGCTCTGAGTGATCTCTGTTGATAGACGGGGTGGGCGGGGGTTGTGATATTCAGGCCAGGTGTCTGTAAGAGTTAAACTAAGAATTCTGTCATTCGTTCAAGATGgacgttttatttttattttttgtaatctatTTTATAACTTGAAAACCCCACCAGTCCCCTCACAGTGCTAGAACTGGGCAGTGACTGTCACTGTGACCCTCTTGTGGAGAGACTTGTATAATTGCATGACGCACCGCTGTGAGGGGGAACGTGGTCtcatgtactgtattgtacttttaGACAGAATTAAAATGGCGTGTAAAATTCCTTTGGACATTCAAGgcctttgtgtattttaaacttgttaCTTGTACGGTTTCTAGTAAGTATATGTAAGGCAATTAATATATCTAGaatatgcttttaaatacacatgtatttcactttttacAGCTCTGGACTTAATGGAAAACTGTATTTGCACACTGGTGTACAGTTTcacttttgtacttttttcaaacccaatgtttcaaaatattaaatcttGGTAATACAC

Function

symbol description
fam76b Predicted to be located in nuclear speck. Orthologous to human FAM76B (family with sequence similarity 76 member B).

NR:

description
PREDICTED: protein FAM76B isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016423 True 2868 mRNA 0.40 10 19427455 19437740

Neighbor

gene id symbol gene type direction distance location
AMCG00016424 sesn3 coding downstream 20516 19378000 ~ 19406939 (-)
AMCG00016418 cwc15,LOC100196400 coding downstream 51859 19366084 ~ 19375596 (-)
AMCG00016420 mre11a coding downstream 110778 19281702 ~ 19316677 (-)
AMCG00016419 NA coding downstream 147787 19277298 ~ 19279668 (-)
AMCG00016414 NA coding downstream 221861 19184938 ~ 19205594 (-)
AMCG00016425 mtmr2 coding upstream 8814 19446554 ~ 19455857 (-)
AMCG00016426 pde2a coding upstream 22553 19460293 ~ 19498100 (-)
AMCG00016428 NA coding upstream 221676 19659416 ~ 19698145 (-)
AMCG00016427 stard10,LOC108278271,LOC106581404 coding upstream 299554 19737294 ~ 19757848 (-)
AMCG00016435 inppl1 coding upstream 379381 19817121 ~ 19857504 (-)
G13414 NA non-coding downstream 168898 19258323 ~ 19258557 (-)
G13413 NA non-coding downstream 170536 19256638 ~ 19256919 (-)
G13392 NA non-coding downstream 174041 19165586 ~ 19253414 (-)
G13366 NA non-coding downstream 338823 19088224 ~ 19088632 (-)
G13341 NA non-coding downstream 349632 19077368 ~ 19077823 (-)
G13615 NA non-coding upstream 565409 20003149 ~ 20004940 (-)
G13680 NA non-coding upstream 878002 20315742 ~ 20316579 (-)
G13762 NA non-coding upstream 1030506 20468246 ~ 20513404 (-)
G13766 NA non-coding upstream 1049141 20486881 ~ 20492021 (-)
G13789 NA non-coding upstream 1157589 20595329 ~ 20598765 (-)
G13367 NA other downstream 322074 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 1886113 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 2160708 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 2557453 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 2566276 16858541 ~ 16861179 (-)
AMCG00016453 NA other upstream 691168 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 1178769 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 1228402 20666142 ~ 20683024 (-)
G13962 NA other upstream 4017352 23455092 ~ 23455811 (-)
G13969 NA other upstream 4261409 23699149 ~ 23700255 (-)

Expression


Co-expression Network