AMCG00016429 (lamtor1,LOC106581407)


Basic Information

Item Value
gene id AMCG00016429
gene name lamtor1,LOC106581407
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19875056 ~ 19879725 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016429
GCCGGCCGGAAGTCAGATGTCAGAGCACAGAGCCGCTGTCATGTGATAAGCGATCCGCGACTCGCAGAGGAAAAGGTAACAAGAAGCAGGAGGGAAGTTGCGACGTCAGGCCCCTACGCtggatttctttctttccttattttatttacttggaAGAAAAGCTGGAGATTGTCTTCGGCTCGCTTGGCAGAGAGCCGAGAGCCCCCAGCGGACATCATGGGATGCTGTTACAGCAGCGAGTCTGAGCCCCAGGAGCAGGACAGAAATGAGCGGAAGCCCTTGATCCCCCATCCCAACCCGGATAGCAAACCGACCAATGGAGCAGAGCGCAACTCGGCCAGCCTTCCCTCGGCGCGGACAGATGAGCAGGCCCTTCTCTCGTCCATCCTCATCAAGACGGCACAGTACGTACGCAGCGTGGAGAACAGACCTCGCCTGGGCCTTGAAAGAATATAATTGATGTCTCTGCCGCAGACTCACAGGGGATGGAGCAGCATGAGTACATGGATAAAGCTCGACAATACAGtaCGAGACTGGCAGTCCTTAGTAATAGTCTGTCACAGAAGAAACCCGCACCTCTGCCCTCACTAACTAGCCAGCCCCACCAAGTGCTTGCCAGTGATCCTGTGCTGTATTCGGACATACAACAGgTCTCAAAGATCGCTGCTTATGCTTACAGTGCAATTTCACAGATAAAAGTCGACGCAAAAGAAGAATTGGTTGTGCAGTTTGCTATTCCCTGATCAACCGAGGGCTGTTCTCTGTCCCCGTTCcacctgtgtgtctctctctttctctctccatccctctccctcccataTGTCCCTAACCGAACCATTCATCTTTGTCTCTGTCCAAGATATTGGCAATGCCACCTTAAAGCATCAACCGCTGAGGACTTGGAAACAAAACTCTCAAAGAATAGGTTGACTCGTACCGAACAAGAACTTTTAAAGTGTGTAAATGAATCTCTCATGTGACCTGTGAAGGAATTTGAGATCCTTGCTGTTCCAAGTGCATTATTAAGAAAGTGTTAAAACTATGGCTTGGATTTTCActatttcagcatttttatgattCTTTTTAATGGGTAGAGCTCCATTAATGAATTGCCACCATGAAAAGTTTAACATAAAGGCCACCTGAGAATTTCTAGAAAACCCGTAGCTCAGAATAACTGGAGAGAGTGCATGGTTGTGCAGTGGGTTAATTTTGTTACTTTATATCCATGGAACCCATTGACTAAATCCAGTTAAGGTCCAAAAGGCTATTGGGTTTGGAAAACCTCAGCCTAGCCTTACATTGTCCACAGATCCTtcacacaacactacacagtTTGTCACAATGCAGAGCCTCTGCTCCAAAGGCATAGAAAGCAATGGAAGGGGTACATTTTCAAGTCAGGACCATTGAGATTTATTGGCAGAGTTTTTATGTAAAGACTCACTTAGTGCTACGCCCTTTGTGTCTCTGAGATTTGCTGTTGCCATTTCCCTTGCAATGTATAAGCACTTGAAATTCACTGGCacccagtttaaaaaaaaaaaaaaaagcttcagaaaagaGTTTTGTGTCAATGCCTTTAATGTACAGATTATATGGTGTAGGGGCAAGAATAATGTTCTGAATGAGCCTCCCATTGTACAGTTATAATTTGTGTGTTGCAAACCTGTTGGTTATCACAAAATACTGTTGAGAGTGGAAGAAATGCAGGAATGACAAAGTCACAAATCAACCAAGCCCTagtttttattaagttttattaatcacacttttcttgctttttaaaggtaaaattatatatgtttggAAGACTGCTAGGACTGGTCATTAAGAATATCTGATTCATGTGTTTCATTCGCCCCAGTGTTGGAGAAAAAATGACTAGTGTATTTTGAAGTCATGTTATCAGAAAAGacacctgtatttattttctttttaatgtatttatggtcactttatatttttcttttctggtgtGAGCAGATCTCTAGTGCAAAGCCAGGCACTTTCATGGGTTTTAAAGGGATTAACCTTAGGGCTGTAAAACAtcaacagacattttatttttcgcTTCTTGCAGCGTGctaatagtattttttgttttgttttttacttaaatgtataatactACCTGAATTACATTGTTTCTTTCTTAGGCTAGTACCAAAAAAGcg
>TU16797
GATAAGCGATCCGCGACTCGCAGAGGAAAAGGTAACAAGAAGCAGGAGGGAAGTTGCGACGTCAGGCCCCTACGCtggatttctttctttccttattttatttacttggaAGAAAAGCTGGAGATTGTCTTCGGCTCGCTTGGCAGAGAGCCGAGAGCCCCCAGCGGACATCATGGGATGCTGTTACAGCAGCGAGTCTGAGCCCCAGGAGCAGAAATGAGCGGAAGCCCTTGATCCCCCATCCCAACCCGGATAGCAAACCGACCAATGGAGCAGAGCGCAACTCGGCCAGCCTTCCCTCGGCGCGGACAGATGAGCAGGCCCTTCTCTCGTCCATCCTCATCAAGACGGCACAGAATATAATTGATGTCTCTGCCGCAGACTCACAGGGGATGGAGCAGCATGAGTACATGGATAAAGCTCGACAATACAGtaCGAGACTGGCAGTCCTTAGTAATAGTCTGTCACAGAAGAAACCCGCACCTCTGCCCTCACTAACTAGCCAGCCCCACCAAGTGCTTGCCAGTGATCCTGTGCTGTATTCGGACATACAACAGgTCTCAAAGATCGCTGCTTATGCTTACAGTGCAATTTCACAGATAAAAGTCGACGCAAAAGAAGAATTGGTTGTGCAGTTTGCTATTCCCTGATCAACCGAGGGCTGTTCTCTGTCCCCGTTCcacctgtgtgtctctctctttctctctccatccctctccctcccataTGTCCCTAACCGAACCATTCATCTTTGTCTCTGTCCAAGATATTGGCAATGCCACCTTAAAGCATCAACCGCTGAGGACTTGGAAACAAAACTCTCAAAGAATAGGTTGACTCGTACCGAACAAGAACTTTTAAAGTGTGTAAATGAATCTCTCATGTGACCTGTGAAGGAATTTGAGATCCTTGCTGTTCCAAGTGCATTATTAAGAAAGTGTTAAAACTATGGCTTGGATTTTCActatttcagcatttttatgattCTTTTTAATGGGTAGAGCTCCATTAATGAATTGCCACCATGAAAAGTTTAACATAAAGGCCACCTGAGAATTTCTAGAAAACCCGTAGCTCAGAATAACTGGAGAGAGTGCATGGTTGTGCAGTGGGTTAATTTTGTTACTTTATATCCATGGAACCCATTGACTAAATCCAGTTAAGGTCCAAAAGGCTATTGGGTTTGGAAAACCTCAGCCTAGCCTTACATTGTCCACAGATCCTtcacacaacactacacagtTTGTCACAATGCAGAGCCTCTGCTCCAAAGGCATAGAAAGCAATGGAAGGGGTACATTTTCAAGTCAGGACCATTGAGATTTATTGGCAGAGTTTTTATGTAAAGACTCACTTAGTGCTACGCCCTTTGTGTCTCTGAGATTTGCTGTTGCCATTTCCCTTGCAATGTATAAGCACTTGAAATTCACTGGCacccagtttaaaaaaaaaaaaaaaagcttcagaaaagaGTTTTGTGTCAATGCCTTTAATGTACAGATTATATGGTGTAGGGGCAAGAATAATGTTCTGAATGAGCCTCCCATTGTACAGTTATAATTTGTGTGTTGCAAACCTGTTGGTTATCACAAAATACTGTTGAGAGTGGAAGAAATGCAGGAATGACAAAGTCACAAATCAACCAAGCCCTagtttttattaagttttattaatcacacttttcttgctttttaaaggtaaaattatatatgtttggAAGACTGCTAGGACTGGTCATTAAGAATATCTGATTCATGTGTTTCATTCGCCCCAGTGTTGGAGAAAAAATGACTAGTGTATTTTGAAGTCATGTTATCAGAAAAGacacctgtatttattttctttttaatgtatttatggtcactttatatttttcttttctggtgtGAGCAGATCTCTAGTGCAAAGCCAGGCACTTTCATGGGTTTTAAAGGGATTAACCTTAGGGCTGTAAAACAtcaacagacattttatttttcgcTTCTTGCAGCGTGctaatagtattttttgttttgttttttacttaaatgtataatactACCTGAATTACATTGTTTCTTTCTTAGGCTAGTACC

Function

symbol description
lamtor1 Predicted to contribute to guanyl-nucleotide exchange factor activity and molecular adaptor activity. Predicted to be involved in several processes, including cellular response to amino acid stimulus; positive regulation of MAPK cascade; and regulation of receptor recycling. Predicted to act upstream of or within several processes, including cholesterol homeostasis; lysosome organization; and positive regulation of TOR signaling. Predicted to be located in late endosome membrane; lysosomal membrane; and membrane raft. Predicted to be part of Ragulator complex. Predicted to be active in lysosome. Orthologous to human LAMTOR1 (late endosomal/lysosomal adaptor, MAPK and MTOR activator 1).

NR:

description
PREDICTED: ragulator complex protein LAMTOR1-like

GO:

id name namespace
GO:0043410 positive regulation of MAPK cascade biological_process
GO:0007040 lysosome organization biological_process
GO:0042632 cholesterol homeostasis biological_process
GO:0001919 regulation of receptor recycling biological_process
GO:0071230 cellular response to amino acid stimulus biological_process
GO:0032008 positive regulation of TOR signaling biological_process
GO:0071986 Ragulator complex cellular_component

KEGG:

id description
K20397 LAMTOR1; ragulator complex protein LAMTOR1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016429 True 2177 mRNA 0.43 5 19875056 19879725
TU16797 False 2075 lncRNA 0.51 5 19875100 19879716

Neighbor

gene id symbol gene type direction distance location
AMCG00016431 anapc15 coding upstream 6038 19866278 ~ 19869018 (+)
AMCG00016430 NA coding upstream 60446 19811402 ~ 19814610 (+)
AMCG00016432 clpb,LOC107568463,LOC108261447,LOC102793156 coding upstream 75242 19758327 ~ 19799814 (+)
AMCG00016422 NA coding upstream 430171 19438593 ~ 19444885 (+)
AMCG00016417 NA coding upstream 512586 19339826 ~ 19362470 (+)
AMCG00016438 NA coding downstream 6033 19885758 ~ 19898268 (+)
AMCG00016439 pola1,LOC107666635,LOC107705179,LOC107721886,LOC107586771,LOC104949401 coding downstream 32115 19911840 ~ 19938673 (+)
AMCG00016441 hgd,LOC102787666 coding downstream 118707 19998432 ~ 20005939 (+)
AMCG00016451 NA coding downstream 128272 20007997 ~ 20009859 (+)
AMCG00016450 NA coding downstream 130571 20010296 ~ 20014909 (+)
G13500 NA non-coding upstream 309944 19564800 ~ 19565112 (+)
G13496 NA non-coding upstream 362890 19511913 ~ 19512166 (+)
G13495 NA non-coding upstream 404600 19470175 ~ 19470456 (+)
G13494 NA non-coding upstream 404958 19469635 ~ 19470098 (+)
G13493 NA non-coding upstream 406268 19468580 ~ 19468788 (+)
G13593 NA non-coding downstream 135219 20014944 ~ 20018086 (+)
G13599 NA non-coding downstream 151768 20031493 ~ 20032916 (+)
G13659 NA non-coding downstream 339718 20219443 ~ 20256020 (+)
G13662 spcs2,LOC107677086 non-coding downstream 407350 20287075 ~ 20289834 (+)
G13681 NA non-coding downstream 439292 20319017 ~ 20319339 (+)
AMCG00016407 NA other upstream 1401367 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 2275475 17562418 ~ 17599581 (+)
G13012 NA other upstream 2753124 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 3389053 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 5091521 14745316 ~ 14783535 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 1902381 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 3986542 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 4058326 23938051 ~ 23945024 (+)
G14057 NA other downstream 4200292 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 4599981 24479706 ~ 24561807 (+)

Expression


Co-expression Network