AMCG00016432 (clpb,LOC107568463,LOC108261447,LOC102793156)


Basic Information

Item Value
gene id AMCG00016432
gene name clpb,LOC107568463,LOC108261447,LOC102793156
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19758327 ~ 19799814 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016432
ATGCGTTCACAGGCGTGCTGTGGAGAGGCGCTCGCTGCCGGTCAGGACGCGCTGGGCTGCCGGGGGAGAGGTGCTGTGCTGGGCGGTCAGGACGCGCTGGGCTGCCGGGGGAGAGGTGCTGTGCTGGGCGGTCAGGATGCGCTGTGCTGCGCTCTCTCCAGGCCGGTGCTGGCCCGGTGCCGGAGGTGCTGCCACCTCAGTGCCCCTGGGCCGGGGATGCTCAGCACCAGGAGGGTGGCGATCGCGCTTTCTGACGACAGAGCCCTCCACGGCTGTGCTCGCAGCTCCGCCCGGCTCACGATACAGCCAGGCGCCTGCGGGTCCAGTAATGTCCCCCTGCGTCCGCAAGAGCAGCGCACGGCCACCAGGTGGCCCCCAACGTCAGACGTGGGACACCGCGACACCTCTGCTGCCGCCCGAGGGCGCCCTGACGGCGGGCACGGCGGGGGAGGCGGCCGGCGCAGGGCGGGCCTTGGCACGGTCGCGTCCGCAGGTGTGCTCTCGGCGGCGGCGCTGGCCTACTGCCTCAAAAGAGAGTCCGAGTGCACAGGAGATTCTTTGCTGGAAGCAGCCCGGTCCAATAATGCCCAGGAAGTCACAAGTGTGGTGACGGCTCTACTGgcagccggagccgatcccaaCCTGGGGGACGAGTTCAGCACGGTCTATGACTTCGCCAGGGAGAAAGGGATCCACTCTCTTGAAGTGCTGGTGACCAGAGAGGACGAGTTCAGCAACCGCCTCAACTCCCGTGCCAGTTTTCGCGGCTGCACCGCGCTCCACTACGCCGTCCTGGCTGATGACCTGCGCAGTGTGAGGAAGCTCCTGGAAGCAGGTGCCAACCCCCTGCTGCCCAATGATATCGGGCACACGCCAGCAGCCTACGCCAAAGAGGGGGAGCTGCTGAAGCTGCTGAAGGATTGGGAAGTCAAGTTTCAGGAGGTGCAGCGGCGGCACGAGGCGGAGGAGCGGAGGAGATTCCCCCTGGAGCGGAGGCTGAGAGAGCACATCATCGGACAGGAAGGCGCCATCAGCACGGTGGCTGCAGCAATACGGAGGAAGGAGAATGGCTGGTACGATGAAGAGCATCCCCTAGTCTTCCTCTTTCTGGGCTCATCTGGAATCGGTAAAACAGAGCTAGCCAAGCAAGTGGCCAGATATATGCACAAAGATGTGAAAAAGGGCTTCATTCGGATGGACATGTCTGAATTCCAGGAGAAACACGAGGTTGCCAAGTTCATAGGCTCCCCTCCAGGCTATGTGGGGCACGAGGAGGGCGGCCAGCTGACCAAGCAGCTAAAGCTGTGTCCCAATGCAGTAGTGCTGTTTGACGAGGTGGACAAGGCCCATCCGGACGTGCTCACCATCATGCTGCAGCTCTTCGACGAGGGAAGACTGACAGATGGAAAAGGAAAGACAATTGAATGCAAAGACGCCATCTTCATCATGACCTCCAATGTGGCCAGTGACGAGATTgcccagcatgcactgcagctGAGACAGGAAGCGCAGGAATTGAGCCGAATGCGATTGGCGGAGAATCTTGaTGACGTACAGAAGACAGACAAAATCACCATATCCAAGCAGTTCAAGGAGAATGTCATTCATCCAATTTTGAAGGCCCATTTCAGGAGGGATGAATTTCTCGGTCGGATCAACGAGATTGTTTACTTCTTGCCCTTCTGCCACTCAGAGCTTATCCTTCTGGTCGGCAAGGAACTCAGTTTCTGGGCCAAGAAGGCCAAACAGAGACACAACATCAATCTGCTGTGGGACAGAGAGGTGATGGACCTGCTGGTAGGGGGGTACAACCTGCACTATGGAGCGCGCTCCATCAAACACGAGGTGGAGCGCCGGGTTGTGAACCAGTTAGCAGCTGCCTACGAGCAGGAGCTGCTCCCCGAGGGCTGCACGCTGCGCCTCTCCGTGGACAGCGGGGGGAAGAAAGCAGACTACAGCCATGCCGAGGGCCAGGGTCCCAGCCTGCGCCTGGAGATCGTGGAAGAGGACAGCACCTCCCGCCAGCTGAACATCCAGCCCCCACTCCACCCAGAGGACGTGGCCTTCTCCATCTGAGCCCACAGACGCTGCCCCCATTGCCGCCCTAGAAGAGGAGCCGTCCTTCTGTGTGCGGCTGCCCATCCGCCCCTGCCCCTGCAAGACACTCAGTTAAGGAGCACTACACACGCCGAGCAGCAGCATTTCCACAAGCATCAGGCTTTTGGCATCCCCTTTCAATGTAGTGTCGGTGCAGTGGTTGACGCCCTGTTTGGTTTTACACAAGTCCTGCGACAAGCGCCAGTTCACTTTGTTCAGAAAAGGAAAACTCTCAACCCCAGTCCTCCCAGTTTCACAGCGATCTTGCAGGCCAGTTTATTGCGCCTGTCTCTGATGTCTGTTGGTTTTCTGAAGCTGTTCAGTCTTTGCCAGCTGAAGTCAGTCGTACTGCTTgaattgtgaagtggaaacccATTTAAATGACTGAGGCACCCTCAAGCTGGCAGATTTTCAGGCTTCTGggtgtttattgttttccttccttATTTAGAAGATAAAgatcacaaaaatacataaaagtgtCTTGTGTATTTTTAGACAGGGCAAaggcagaaatgtattttgcgATTGTAGATGTATGTAAATACTGAGGTTTAAAGTTGTGTAGAGGAATATGCGTATTGAGATGGAAacgatttaaattaattcacaacATTAAACGTTTTGCTTTCTCCTTTCGttgttatattataaataaagagATCTCTTCAGACTATATGAA

Function

symbol description
clpb Acts upstream of or within cerebellum development and thigmotaxis. Human ortholog(s) of this gene implicated in 3-methylglutaconic aciduria with cataracts, neurologic involvement and neutropenia. Orthologous to human CLPB (caseinolytic mitochondrial matrix peptidase chaperone subunit B).

NR:

description
PREDICTED: caseinolytic peptidase B protein homolog isoform X3

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016432 True 2779 mRNA 0.57 16 19758327 19799814

Neighbor

gene id symbol gene type direction distance location
AMCG00016422 NA coding upstream 313442 19438593 ~ 19444885 (+)
AMCG00016417 NA coding upstream 395857 19339826 ~ 19362470 (+)
AMCG00016421 NA coding upstream 432620 19324580 ~ 19325707 (+)
AMCG00016415 NA coding upstream 436046 19316828 ~ 19322281 (+)
AMCG00016416 NA coding upstream 506473 19239187 ~ 19251854 (+)
AMCG00016430 NA coding downstream 11588 19811402 ~ 19814610 (+)
AMCG00016431 anapc15 coding downstream 66464 19866278 ~ 19869018 (+)
AMCG00016438 NA coding downstream 85944 19885758 ~ 19898268 (+)
AMCG00016439 pola1,LOC107666635,LOC107705179,LOC107721886,LOC107586771,LOC104949401 coding downstream 112026 19911840 ~ 19938673 (+)
AMCG00016441 hgd,LOC102787666 coding downstream 198618 19998432 ~ 20005939 (+)
G13500 NA non-coding upstream 193215 19564800 ~ 19565112 (+)
G13496 NA non-coding upstream 246161 19511913 ~ 19512166 (+)
G13495 NA non-coding upstream 287871 19470175 ~ 19470456 (+)
G13494 NA non-coding upstream 288229 19469635 ~ 19470098 (+)
G13493 NA non-coding upstream 289539 19468580 ~ 19468788 (+)
G13593 NA non-coding downstream 215130 20014944 ~ 20018086 (+)
G13599 NA non-coding downstream 231679 20031493 ~ 20032916 (+)
G13659 NA non-coding downstream 419629 20219443 ~ 20256020 (+)
G13662 spcs2,LOC107677086 non-coding downstream 487261 20287075 ~ 20289834 (+)
G13681 NA non-coding downstream 519203 20319017 ~ 20319339 (+)
AMCG00016407 NA other upstream 1284638 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 2158746 17562418 ~ 17599581 (+)
G13012 NA other upstream 2636395 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 3272324 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 4974792 14745316 ~ 14783535 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 75242 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 1982292 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 4066453 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 4138237 23938051 ~ 23945024 (+)
G14057 NA other downstream 4280203 24080017 ~ 24110182 (+)

Expression


Co-expression Network