AMCG00016433


Basic Information

Item Value
gene id AMCG00016433
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19872617 ~ 19874894 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016433
CTACAAATGGGAGGACATTAACAAAGGGTTTACTTAGTGACATTATTTAAAGTCTGACACAGCTCGGGGGGTGGGGGCGCTTTACAGATGTCTTCAAAGCACTTCTGTAATGAGAGGCCTGCGTTTATAACCCTCAATAAACGTGCTCCCCGGATGCCATTCAGATGCTCGAGTTAAAAACCAGTTTGGCAGGATGTGCCGCCTTCACTGAGCTCTGTGTCAGTCTTAACAGTGCTGCcgtttctgttatttttattgtacaccGAAGGGATTATTCAACAGTGGCACTGCCATTATAACTGgggtactatatatatatatatatatatatacacacacacaaactggacAAGGAGTCTACGTCATTGCAAACTGATCGAATAAGATCGAAGTTCGTTTCTTTTTACTAACTATTGGCCAATGGCGGCTCCCATGCTACTGTCAGTGTGGGTGCTGCTGTCGTCGGGCGGTGTCTTCGCCTCAGACCGCGCTTCCTCCCCGGGGTTGAGCTCCACACGCTCCGCCTGCAAGCCGATCCCCGACACGCTGGGCTTGTGCCGCGGCGTGGGCTACCCGCAGATGCGGCTCCCCAACCTGCTGGGCCATCACACCGTGAGAGAGGCGCAGCAGCAGGCCGGCCCCTGGGTGCCACTGCTGGCCAAACAGTGTCACCCCGACACCAAGATGTTCCTGTGCTCCCTCTTCGCGCCGGTGTGCTTGCTGGAGCTGCCGGGACCGGTGCGGCCCTGCCGGAGCCTGTGCGAGGGGGTGCGGGCCGGCTGCCTGCCCGTCATGAGCGCCTTCGGCTTCCCCTGGCCGCACATGTTCAACTGCAGCCAGTTCCCCGCCGGCAGCGAGGTGTGCATCCCGCCGACGGGCCCCCGGGCCAAGGACAGCGGCGCACCGCACCATAATGACACGGGGACGGTGATGTGCGATGCTTGCAGTGACTCGGAGCCGGAGCTTCAGCGCAGGTACTGCCACAGTGACTTTGCAGTGAGGCTGCGAGTCAAAGAGACATCCTCGGAAGGGGCAGATAGAAGGATTGTTGCTCACGGCCGCAGCCGGGTCCTGTTGCGCCGAGGTGACCGCGCAGAAGAGGAGGCCATGGCCCGGAGCGACCTCTGGCTGGAGGAGGGAAGCAAGTGCGCTTGCGAAGAACTGGATCATTACTCCTCTGGCACCATCCTCGCCTTGGGGAACAAGGTGGAAGGCAGGCTGATGGTCTCAAGGATGCTTCTTTGGAAACGGGCAGATAAGGAGCTGAGGAAATTCATAAGGAGTCTGCAGAAATTAGTCTGCTGAATGTGgggcttttgtttgtgttgggaAAATGTGTATGGAGAGGGGGGGAGGCACACACTGCAAGAAAGCTTCTTTTAAGTGATTCAATGTACACATTGTGTGCACTATCATTAGGTAGAATACCTATATAGAAACAATTACTTTGGTGTAGCGCATACCCTAAGTTTTGTAAATAATGATGTCAATCAACCAATAGGGTGGACTAAGGTTGAAGATGGGGAGTAACTGCTCAAGGTTTACTGTAGCGAATATTGCATGTTGTCTTTCTGTAAGCTGCACCAAGAACCACAAAGAACTGGATAATATCAACAGCTGTGAGAAACAGACCTTTGAGTCAGCAAATCTGTTCTTCTTTAATTGAACCTGTCCCTGTATATCaatatgtttcttttcatttttattaaacctgaaaaaacaaataattcaggCCTGGGACTGGGTAGCCTTCTGTAAAGATcctgttttttgtaataaaacaataaaagttaCTATTCATAAACAATA

Function

GO: NA

KEGG:

id description
K02222 SFRP5; secreted frizzled-related protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016433 True 1809 mRNA 0.51 3 19872617 19874894

Neighbor

gene id symbol gene type direction distance location
AMCG00016434 NA coding downstream 1315 19869693 ~ 19871302 (-)
AMCG00016436 NA coding downstream 6922 19861454 ~ 19865695 (-)
AMCG00016435 inppl1 coding downstream 15113 19817121 ~ 19857504 (-)
AMCG00016427 stard10,LOC108278271,LOC106581404 coding downstream 114769 19737294 ~ 19757848 (-)
AMCG00016428 NA coding downstream 174472 19659416 ~ 19698145 (-)
AMCG00016437 NA coding upstream 5377 19880271 ~ 19881825 (-)
AMCG00016440 NA coding upstream 94698 19969592 ~ 19979924 (-)
AMCG00016444 NA coding upstream 131029 20005923 ~ 20007711 (-)
AMCG00016445 NA coding upstream 142486 20017380 ~ 20031020 (-)
AMCG00016442 NA coding upstream 156537 20031431 ~ 20040137 (-)
G13414 NA non-coding downstream 614060 19258323 ~ 19258557 (-)
G13413 NA non-coding downstream 615698 19256638 ~ 19256919 (-)
G13392 NA non-coding downstream 619203 19165586 ~ 19253414 (-)
G13366 NA non-coding downstream 783985 19088224 ~ 19088632 (-)
G13341 NA non-coding downstream 794794 19077368 ~ 19077823 (-)
G13615 NA non-coding upstream 128255 20003149 ~ 20004940 (-)
G13680 NA non-coding upstream 440848 20315742 ~ 20316579 (-)
G13762 NA non-coding upstream 593352 20468246 ~ 20513404 (-)
G13766 NA non-coding upstream 611987 20486881 ~ 20492021 (-)
G13789 NA non-coding upstream 720435 20595329 ~ 20598765 (-)
G13367 NA other downstream 767236 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 2331275 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 2605870 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 3002615 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 3011438 16858541 ~ 16861179 (-)
AMCG00016453 NA other upstream 254014 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 741615 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 791248 20666142 ~ 20683024 (-)
G13962 NA other upstream 3580198 23455092 ~ 23455811 (-)
G13969 NA other upstream 3824255 23699149 ~ 23700255 (-)

Expression


Co-expression Network