AMCG00016434


Basic Information

Item Value
gene id AMCG00016434
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19869693 ~ 19871302 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016434
ATGGTGTCGCCCGCGATCGCTCTGGCGTTCCTCCCTTTTGTGGTGACGCTGATAATCCGGTACCGCTACTACTTCCTGCTCTTCTACCGGGCGGTGTTGGTGCGTATGGTACAGGACTGCCTAACCAGTCTGACGCGGGAGGAGCGGGCGTTCCAGTACGTGCTGACACATGCCACCCCCGGGGACCCCAACAGCATCCTCGACACCTTCGACCACTGGTGCAGTAAGGTGGAGTACATGAGCAACATCGGACCAAGGAAAGTCCTGGACAGACTCATAGTGGACAATGCCCCTCTGACCGTTCTGGAGCTGGGCACACACTGCGGGTACGGGGCTGTCCGCATTGCCCGCTCGCTGCAACTCGGTGCCAGGCTCTACACCGTGGAGATGGACGAGCGCAACGCTGAAGTGGCCGAGAAAGTCATCCGTCTGGCTGGCTTCGACGATGACACGTTGGAGCTGATAGTGGGGACGTCAGAAGAGGTGATCACCAAAATGAGAGAGCAGTACGGGGTGGAGCGACTGGACTTCGTCTTCATGGACCACTGGAAGCGCTGCTACCTCCCCGACCTTCAGCTCCTGGAGGGCAGTGGGTTGCTGGGCAAGGGCAGCATTATTCTGGCCGATAATGTCATTTTCCCAGGGGCGCCCCATTTCCTGCGCTATGTGAAGAAGAGTGGACTGTACCAATACCGCACCCACCGCGCTACCCTGGAGTACACCCCCGGCATCCGAGACGGCATGGCAGAGCTCACCTACCTCGGGGTTAAGTAA

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0016206 catechol O-methyltransferase activity molecular_function

KEGG:

id description
K00545 COMT; catechol O-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016434 True 774 mRNA 0.59 3 19869693 19871302

Neighbor

gene id symbol gene type direction distance location
AMCG00016436 NA coding downstream 3998 19861454 ~ 19865695 (-)
AMCG00016435 inppl1 coding downstream 12189 19817121 ~ 19857504 (-)
AMCG00016427 stard10,LOC108278271,LOC106581404 coding downstream 111845 19737294 ~ 19757848 (-)
AMCG00016428 NA coding downstream 171548 19659416 ~ 19698145 (-)
AMCG00016426 pde2a coding downstream 371593 19460293 ~ 19498100 (-)
AMCG00016433 NA coding upstream 1315 19872617 ~ 19874894 (-)
AMCG00016437 NA coding upstream 8969 19880271 ~ 19881825 (-)
AMCG00016440 NA coding upstream 98290 19969592 ~ 19979924 (-)
AMCG00016444 NA coding upstream 134621 20005923 ~ 20007711 (-)
AMCG00016445 NA coding upstream 146078 20017380 ~ 20031020 (-)
G13414 NA non-coding downstream 611136 19258323 ~ 19258557 (-)
G13413 NA non-coding downstream 612774 19256638 ~ 19256919 (-)
G13392 NA non-coding downstream 616279 19165586 ~ 19253414 (-)
G13366 NA non-coding downstream 781061 19088224 ~ 19088632 (-)
G13341 NA non-coding downstream 791870 19077368 ~ 19077823 (-)
G13615 NA non-coding upstream 131847 20003149 ~ 20004940 (-)
G13680 NA non-coding upstream 444440 20315742 ~ 20316579 (-)
G13762 NA non-coding upstream 596944 20468246 ~ 20513404 (-)
G13766 NA non-coding upstream 615579 20486881 ~ 20492021 (-)
G13789 NA non-coding upstream 724027 20595329 ~ 20598765 (-)
G13367 NA other downstream 764312 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 2328351 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 2602946 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 2999691 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 3008514 16858541 ~ 16861179 (-)
AMCG00016453 NA other upstream 257606 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 745207 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 794840 20666142 ~ 20683024 (-)
G13962 NA other upstream 3583790 23455092 ~ 23455811 (-)
G13969 NA other upstream 3827847 23699149 ~ 23700255 (-)

Expression


Co-expression Network