AMCG00016439 (pola1,LOC107666635,LOC107705179,LOC107721886,LOC107586771,LOC104949401)


Basic Information

Item Value
gene id AMCG00016439
gene name pola1,LOC107666635,LOC107705179,LOC107721886,LOC107586771,LOC104949401
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19911840 ~ 19938673 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016439
ATGCACACCAAGGACTTGGTCCAGAAGATGAACCTTGAGGTGATTTACGGAGACACGGATTCCATCATGATCAACACCAACAGCACCAATCTGGAAGAGGTCTACAAACTGGGCAACAAGGTGAAGAGCGAGGTGAACAAGTTGTACAAGCTGCTGGAGATTGACATCGATGGCGTCTTCAAatctctgctgctgctgaagaagaagaagtacGCGGCGCTGACGGTGGAGTCCACTGGGGATGGGCGCTACACCACCAAGCAGGAGCTCAAGGGCCTGGACATCGTCAGGAGGGACTGGTGCGACCTGGCCAAGGACTGTGGCAAcTATGTAATTGGTCAGATCCTCTCAGACCAGCCCAGGGACACCATTGTGGAGAACATTCAGAGGCGTCTGATAGAAATTGGGGAGAACGTGTTGAAGGGCAGCGTCCCGCTCAACCAGTTTGAGATCAATAAGGCCCTGACCAAGGACCCGCAGGACTACCCCGACAAGAAGAGCCTGCCCCATGTCCACGTGGCTCTGTGGATCAATTCTCAAGGGGGGAAGAAGGTGAAAGCTGGGGATACAGTCTCGTACATCATCTGTCAGGTAAACACTGGAgaTGGATCCAATCTAGGAGCCAGCCAGAGGGCCTACGCTTTGGAGCAGCTTCAGAAGCAGGAGTCGCTGACCCTGGACACGCAGTACTATCTCTCCCAGCAGGTCCACCCTGTGGTGGCCCGCATCTGTGAGCCTATCGAGGGGATCGACTCTGTCCTCATCGCCACGTGGCTTGGCCTGGACCCAACACAGTTCCGCGCCCATCAGCAGTACCAGCGCGATGATGAGAGCGAGGCCCTCCTGGGAGTCCCTGCCCAGCTGACCGATGAGGAGAAGTACCGGGACTGCGAGAGGTTCAAGTTCGCCTGTCCGGAGTGCTCCACCGAACACACCTACGACACCGTCTTCGAAGGCTCGGGAGACAAGCTTCAGCCCAGTCTGATGTGCTGCTGTAATAATGACTGCAAAGCTGCCCCAATAAATTATCAAGTTGAAATAAGCAACAAACTCATTCTGGACATCAGACGTCACATCAAAAGATACTACAGTGGCTGGCTGATCTGCGAGGAGCAAGCATGTCAGAACCGCACCAGGCGTCTGCCGCAGGCTTTCTCTCGCAGTGGACCCATATGCCCAGCATGCTTGAAGGCAAATCTGAGACCAGAGGTGCCATCCACCTCACTAGAGTGTGACTGGAATCGTCTTGCCTCTGACAGCGAGCTGAAAGTGAGCAGATCAGTCCTGTCTGAGTTAGTCAGGCTGCTGGAGATACCCCAGTGTTTGTCTGTCTCGACTGGTTCAGTGATCAGTTAA

Function

symbol description
pola1 Predicted to enable several functions, including DNA binding activity; DNA-directed DNA polymerase activity; and nucleotide binding activity. Predicted to be involved in lagging strand elongation; leading strand elongation; and mitotic DNA replication initiation. Predicted to act upstream of or within DNA replication. Predicted to be located in nucleus. Predicted to be part of alpha DNA polymerase:primase complex. Is expressed in immature eye; nervous system; neural tube; pectoral fin musculature; and pharyngeal arch 3-7 skeleton. Human ortholog(s) of this gene implicated in Van Esch-O'Driscoll syndrome and X-linked reticulate pigmentary disorder. Orthologous to human POLA1 (DNA polymerase alpha 1, catalytic subunit).

NR:

description
PREDICTED: DNA polymerase alpha catalytic subunit-like

GO:

id name namespace
GO:0006303 double-strand break repair via nonhomologous end joining biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0019985 translesion synthesis biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006297 nucleotide-excision repair, DNA gap filling biological_process
GO:0005658 alpha DNA polymerase cellular_component
GO:0008408 3'-5' exonuclease activity molecular_function
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0001882 nucleoside binding molecular_function

KEGG:

id description
K02320 POLA1; DNA polymerase alpha subunit A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016439 True 1356 mRNA 0.54 10 19911840 19938673

Neighbor

gene id symbol gene type direction distance location
AMCG00016438 NA coding upstream 13572 19885758 ~ 19898268 (+)
AMCG00016431 anapc15 coding upstream 42822 19866278 ~ 19869018 (+)
AMCG00016430 NA coding upstream 97230 19811402 ~ 19814610 (+)
AMCG00016432 clpb,LOC107568463,LOC108261447,LOC102793156 coding upstream 112026 19758327 ~ 19799814 (+)
AMCG00016422 NA coding upstream 466955 19438593 ~ 19444885 (+)
AMCG00016441 hgd,LOC102787666 coding downstream 59759 19998432 ~ 20005939 (+)
AMCG00016451 NA coding downstream 69324 20007997 ~ 20009859 (+)
AMCG00016450 NA coding downstream 71623 20010296 ~ 20014909 (+)
AMCG00016449 NA coding downstream 120670 20059343 ~ 20064622 (+)
AMCG00016448 abcg1,LOC108426925,LOC107684024,LOC107561305,LOC107677096,LOC107755138,LOC106612441 coding downstream 166243 20104916 ~ 20126284 (+)
G13500 NA non-coding upstream 346728 19564800 ~ 19565112 (+)
G13496 NA non-coding upstream 399674 19511913 ~ 19512166 (+)
G13495 NA non-coding upstream 441384 19470175 ~ 19470456 (+)
G13494 NA non-coding upstream 441742 19469635 ~ 19470098 (+)
G13493 NA non-coding upstream 443052 19468580 ~ 19468788 (+)
G13593 NA non-coding downstream 76271 20014944 ~ 20018086 (+)
G13599 NA non-coding downstream 92820 20031493 ~ 20032916 (+)
G13659 NA non-coding downstream 280770 20219443 ~ 20256020 (+)
G13662 spcs2,LOC107677086 non-coding downstream 348402 20287075 ~ 20289834 (+)
G13681 NA non-coding downstream 380344 20319017 ~ 20319339 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 32115 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 1438151 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 2312259 17562418 ~ 17599581 (+)
G13012 NA other upstream 2789908 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 3425837 16484355 ~ 16486003 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 1843433 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 3927594 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 3999378 23938051 ~ 23945024 (+)
G14057 NA other downstream 4141344 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 4541033 24479706 ~ 24561807 (+)

Expression


Co-expression Network