AMCG00016440


Basic Information

Item Value
gene id AMCG00016440
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19969592 ~ 19979924 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016440
TTAatggcaaagaaaaataaagatccTTTTGGTTTTGTCTGGGAGCCAATCAGAGAGGGAAGAGCCCGTCAATGTAAGAGAATCGGGAGCAAAGCGAGCGCAGCGCAGCGCACAGGACATTAGTGTCTCCAAGAGTGGCTGGAGAAGAGGGGGACCCGACAGACACCGGCGGAGAGACGCAGAAAACAAGGGGGGGCAAGAAAAcagggtggaaaaaaaacaatctccaaaaggaaaaaatgaGCAGTCAGTACGAGGAAGACATTTCCGAGAGAACAGAGTGTAAAAGTAGATCTCCAACTTTGCTCTCCTCGTACTGTATAGACAGCATACTGGGCAGGAGGAGCCCCTGTAAAATGAGACTGATAGGAGCGCAAAGTCTACCCGGCAGAGCGGACCTGGACAAGGCCGGCCAAGgttCCCCTAAAGACAGTCTCTCTTTCGATTCGGAGATCCACCTGCCCCCGAAGTTGCGCCGGCTTTATGGGCAGGGAGGGAAATACCTGGAGTCCAGCAGAGGATTTAACGAGCATGGGGAGAAaggggagagggacagagtaCTGGAGCAAACCTGTGAAAACCTGAAAATCATCCAGGCCCCGCAGGTCAGTATCAGCCGCAGTAAGTCCTACAGGGAAAACGCGACCTACAGCCAAAACGCAGGGGACCAGAGCCCGGAGCGCAGCGCGGAGGAGCGCACGGAGCTGGAGACGCGCCACTGCGAGGAAGACGCCGTGAAGGAGGAGAACTGCGGGGAAGGAGACCTGTCCCCCAAGGGTGAAGAAGGCCTTCACCACGATGGGGATGTTAAAGACGGGGACGACAGCGTGTGCTTGTCCGCTGGCAGTGACTCGGAAGAGGGGATGCTCAAGAGGAAGCAGAGGAGATACAGGACTACCTTCACCAGTTACCAGCTGGAAGAACTGGAGAGGGCTTTCCAAAAGACGCACTATCCCGACGTGTTCACCAGagAAGAGCTGGCGATGCGACTAGACTTGACAGAAGCCCGAGTTCAAGTGTGGTTTCAGAACCGCAGGGCTAAATGGAGGAAGCGGGAGAAGGCTGGAGTTCAGACTCACCCGCCAGGACTGCCTTTCCCCGGCCCCCTGGCTGCGGCCCACCCCCTGAGCCACTACCTCGACGGCAGCCCCTTCCCCCCGCACCACCCGGCGCTGGAGTCCGCCTGGACagctgccgccgccgccgccgccgccgccttCCCGGGCCTGCCGCCCCCGCCCGCCAGCTCCAACCTGCCTCCCGCCGGGACCCCCCTGGGCCTCAGCACCTTCCTGGGGGCAGCCATGTTCCGACACCCGGCCTTCATCAGCCCCACCTTCGGCAGGCTTTTCTCCACGATGGCACCCCTGACCAGCGCTTCCACTGCAGCCGCTCTTCTGAGACAGCCGGCCCCGGCAGTGGAGAGCGCGGTGCAGGCCAGCGGTCTGTCCGACCCCACCGTGGCTGCGGCCGACCGCCGGGCCTCCAGCATCGCAGCCCTCAGACTCAAAGCGAAAGAGCACTCTGCCCAGCTCACCCAGCTCAACATCCTGCCGTCCAGCAACACGGGCAAGGAGGTTTGCTGAGCCCAAGGGCCTACACTCACCAGGAGCACGACCAAATTCAAAGAGGACTGGCAACTCTCGCAAGCGGCTAGGATTCTGAAGGCCCCATCTCCCCTACACTCCCTATCCACCCCCCCACAGTCCACAACCACACCTTGTGCCATGCATCAGAAAAGTCATGAACTGGCTCGAACCAGCATTGGTCACCGAATAGAACAGTCAGGATAGATGATAAagagttgttttcttttccttccatAGTAAACTAGAACTCTTATAACCCAAGGTGATGCACACTTACTTACATGTAAGTATGAAATgtaagcaaaagcaaaaacatacaaacttaCTGGAAATGCAAAAGGTCCTTAGACAATGGATCATTTTCTTCACCTGTAATGGAAGAGCCAACACATGGAATATCATTTCACCTGCTTCCGATGTACTTTGAGAGATTGAGCACACGGTCATTTTTATTATCTACGCCACTGTGTGACCAGAAGTACAGCCGTAACGGCACATTGACGCGAAACATTCGTAAGACTGGACTACAAAGTTGGGAATGACTCGAGCTAATGGCATATTACCAGAAGTTGAAAGTGGTGCACTTACATTATAGGATTGTTCTGTCCTTCATCTGTTTTACATTGTAACCAAGGTTGCTATGCCAAAGGGAAATATACTACTGCCAGATTTTTGGACTGTTTTAGTCACTAAACTGTGATTAGTACTTCTGTACATAAAGttgtaattaagaaaaaaaagcaaaacaaagctttgtatatttgaaatgttataaaaaGAAGTTGCACTTGATATAGTATTGTATGGATGTTACCCTGTAGATTTTTTCCTGTGTCTGTGAAACAATAGGTTCCtagaatattatttatgtaaactCTTTATTTAACTTATAAGCCACAGGTTTTGAAAACCTTGAAAAGGCAATGatactttttttgtaatgtaaatgtttgtacTTTTCCTTGCCTCAGTTGAGGCAGAAAAGTGGcctactaaaaataaaaatgttgaacaAGC

Function

GO:

id name namespace
GO:0021539 subthalamus development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048666 neuron development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09452 ARX; homeobox protein aristaless-related

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016440 True 2606 mRNA 0.52 5 19969592 19979924

Neighbor

gene id symbol gene type direction distance location
AMCG00016437 NA coding downstream 87767 19880271 ~ 19881825 (-)
AMCG00016433 NA coding downstream 94698 19872617 ~ 19874894 (-)
AMCG00016434 NA coding downstream 98290 19869693 ~ 19871302 (-)
AMCG00016436 NA coding downstream 103897 19861454 ~ 19865695 (-)
AMCG00016435 inppl1 coding downstream 112088 19817121 ~ 19857504 (-)
AMCG00016444 NA coding upstream 25999 20005923 ~ 20007711 (-)
AMCG00016445 NA coding upstream 37456 20017380 ~ 20031020 (-)
AMCG00016442 NA coding upstream 51507 20031431 ~ 20040137 (-)
AMCG00016443 NA coding upstream 63426 20043350 ~ 20060165 (-)
AMCG00016446 NA coding upstream 91824 20071748 ~ 20082592 (-)
G13414 NA non-coding downstream 711035 19258323 ~ 19258557 (-)
G13413 NA non-coding downstream 712673 19256638 ~ 19256919 (-)
G13392 NA non-coding downstream 716178 19165586 ~ 19253414 (-)
G13366 NA non-coding downstream 880960 19088224 ~ 19088632 (-)
G13341 NA non-coding downstream 891769 19077368 ~ 19077823 (-)
G13615 NA non-coding upstream 23225 20003149 ~ 20004940 (-)
G13680 NA non-coding upstream 335818 20315742 ~ 20316579 (-)
G13762 NA non-coding upstream 488322 20468246 ~ 20513404 (-)
G13766 NA non-coding upstream 506957 20486881 ~ 20492021 (-)
G13789 NA non-coding upstream 615405 20595329 ~ 20598765 (-)
G13367 NA other downstream 864211 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 2428250 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 2702845 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 3099590 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 3108413 16858541 ~ 16861179 (-)
AMCG00016453 NA other upstream 148984 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 636585 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 686218 20666142 ~ 20683024 (-)
G13962 NA other upstream 3475168 23455092 ~ 23455811 (-)
G13969 NA other upstream 3719225 23699149 ~ 23700255 (-)

Expression


Co-expression Network