AMCG00016441 (hgd,LOC102787666)


Basic Information

Item Value
gene id AMCG00016441
gene name hgd,LOC102787666
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19998432 ~ 20005939 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016441
ATGTCTGCACGGTATTTGTCTGGCTTTGGCAATGAATTTGCCACAGAAGATCCACGTTGCCCTGGGGCGTTACCGGATGCACAGAACAATCCGCAGGTGTGCCCCTATGGTCTGTACGCAGAGCAGCTCTCTGGCTCCGCCTTCACCTGCCCACGACCGACCAATAAGAGAAGctGGCTTTACCGGATACTACCCTCCGTGCGTCACAAGCCCTTTGCACCTCTGGAGCAGGGACACCTGACACAAAACTGGGATGAAGTCGATCCCGATCCCAACCAGctCCGGTGGTTGCCATTCACTGTTCCCAAGGTATCCGAGAAGAAGATGGATTTTGTGACAGGTCTGCACACAGTGTGTGGGGCGGGGGACACCAGAACTCGCAATGGGATTGCCGTTCACATCTACACCTGCAACATCTCTATGCTcgacagGTGTTTCAACAACTCGGATGGGGATTTTCTAATTGTTCCCCAGCAAGGAAAACTCCTGATTACAACTGAATTTGGGAAAATGATGGTAGAGCCCAATGAGATCTGTGTTATTCAGCAAGGGATGCGTTTCAGTGTGGACGTGTTTGGGGAGGCGAGAGGCTACATCCTGGAGGTGTACGGCTCTCACTTTGAGCTGCCGGATCTTGGACCTATAGGTGCCAATGGCTTGGCCAATCCTCGTGATTTTCTGGTGCCTGTTGCCTGGTATGAGGATCGCAAGGTGCCCAGTGGGTACTCGGTCATAAATAAGTACCAGGGCAGGCTATTTGCAGCTGAACAGGATTTTTCACCATTTAATGTCGTGGCCTGGCATGGAAACTACGTCCCATACAAATACAACCTGGAGAAGTTCATGGTGATCAATTGTGTTGCCTTTGACCACGCTGATCCCTCCATCTTCACGGTGCTGACAGCCAAGTCCACTCGCCCCGGTGTGGCTATTGCAGACTTTGTCATCTTTCCCCCACGGTGGGGGGTTGCTGACCACACGTTCAGGCCCCCGTACTACCACAGGAACTGCATGAGTGAGTTCATGGGCTTGATCAAAGGTTACTACGAGGCCAAGGAGGAAGGTTTCCAGCCAGGAGGGGCCAGTCTTCACAGCATAATGACCCCGCACGGCCCCGACAGCGAGTGCTTTGAGAAAGCCAGCGGGGCCGACCTGAAGCCAGAGCGCGTGGCAGAGGGCACCATGGCCTTTATGTTCGAGTCATCCTTCAGCATGGCAGTCACTAAGTGGGGTCTGGACACCTGTAATCGTCTGGATAAGAACTATTACAAGTGCTGGGAACCTCTGAAAAGCCACTTCAATCCCAACTGGAAACCGAGcagcaaataaagaaaacagcagGAGATAAAGGAAGAACGTGGAGCCATTTCTAACACTATTCTTCAGCTGATCAGCGGACCTGGTTACTGTGTTTGCTAGAAAATGAAGGTTAATTGTATCTACAAGCACCACCTAAATGCAAAAGAAGCATCCCCATTGgcctaattaaatacattggaTGAATGCCCTCCCTTTATAGCTTAATAAACTagaattataaattataaattagcAAGAAAAGTTAAATAATCTGATCTTTGCCTTTAactagtttttaattaatctcttcCTTGGTGGCCAAATTCAATGATGATTTGGTTATAAAACATtcctcatttttaaaagttgagTTTAAATGAAGTTTCCAAACataatctgaaaatattgaGATTGGCTTGCAAGTTTCTTTCTATATTAGCAGTAAAATGTCCAGCATTCCCaccaatgtttaaatacatatggACAGACTTCCTTGTGTTTCTTGCAAATAAAGCTACTCAAAACTA

Function

symbol description
hgd Predicted to enable homogentisate 1,2-dioxygenase activity. Predicted to be involved in L-phenylalanine catabolic process. Predicted to act upstream of or within tyrosine metabolic process. Predicted to be active in cytoplasm. Is expressed in digestive system; fin; median fin fold; pectoral fin bud; and retina. Human ortholog(s) of this gene implicated in alkaptonuria. Orthologous to human HGD (homogentisate 1,2-dioxygenase).

NR:

description
PREDICTED: homogentisate 1,2-dioxygenase

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006559 L-phenylalanine catabolic process biological_process
GO:0006570 tyrosine metabolic process biological_process
GO:0004411 homogentisate 1,2-dioxygenase activity molecular_function

KEGG:

id description
K00451 HGD, hmgA; homogentisate 1,2-dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016441 True 1826 mRNA 0.47 15 19998432 20005939

Neighbor

gene id symbol gene type direction distance location
AMCG00016439 pola1,LOC107666635,LOC107705179,LOC107721886,LOC107586771,LOC104949401 coding upstream 59759 19911840 ~ 19938673 (+)
AMCG00016438 NA coding upstream 100164 19885758 ~ 19898268 (+)
AMCG00016431 anapc15 coding upstream 129414 19866278 ~ 19869018 (+)
AMCG00016430 NA coding upstream 183822 19811402 ~ 19814610 (+)
AMCG00016432 clpb,LOC107568463,LOC108261447,LOC102793156 coding upstream 198618 19758327 ~ 19799814 (+)
AMCG00016451 NA coding downstream 2058 20007997 ~ 20009859 (+)
AMCG00016450 NA coding downstream 4357 20010296 ~ 20014909 (+)
AMCG00016449 NA coding downstream 53404 20059343 ~ 20064622 (+)
AMCG00016448 abcg1,LOC108426925,LOC107684024,LOC107561305,LOC107677096,LOC107755138,LOC106612441 coding downstream 98977 20104916 ~ 20126284 (+)
AMCG00016457 NA coding downstream 303040 20308979 ~ 20316754 (+)
G13500 NA non-coding upstream 433320 19564800 ~ 19565112 (+)
G13496 NA non-coding upstream 486266 19511913 ~ 19512166 (+)
G13495 NA non-coding upstream 527976 19470175 ~ 19470456 (+)
G13494 NA non-coding upstream 528334 19469635 ~ 19470098 (+)
G13493 NA non-coding upstream 529644 19468580 ~ 19468788 (+)
G13593 NA non-coding downstream 9005 20014944 ~ 20018086 (+)
G13599 NA non-coding downstream 25554 20031493 ~ 20032916 (+)
G13659 NA non-coding downstream 213504 20219443 ~ 20256020 (+)
G13662 spcs2,LOC107677086 non-coding downstream 281136 20287075 ~ 20289834 (+)
G13681 NA non-coding downstream 313078 20319017 ~ 20319339 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 118707 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 1524743 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 2398851 17562418 ~ 17599581 (+)
G13012 NA other upstream 2876500 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 3512429 16484355 ~ 16486003 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 1776167 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 3860328 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 3932112 23938051 ~ 23945024 (+)
G14057 NA other downstream 4074078 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 4473767 24479706 ~ 24561807 (+)

Expression


Co-expression Network