AMCG00016442


Basic Information

Item Value
gene id AMCG00016442
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20031431 ~ 20040137 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016442
GTGCACCCGCATAGACGCTGAACTCCCACGattaatatttaacttgaaataaACATCAGCACTTGTACATCGGCGGGCACATTGTGTAGCAAAACCATCACGGAAACATAAGATCATGTATAATCTGTAATTTGGGGAATGCCAATCTTGTTAAGATGTCTGTTTCTCATGCCAAAGACGAGTCTGTCCCGCGTCCAATCAAACTCGGCCAAATGTCAGAAAGTCGGAACTGTTGGCAGCATCGCTAGTGGCTCAGACTCAGACTCTGGTCCAGGCTGGTCTGTAGACACTATGATTGTACTGAGCCGCAGTGCCATCATGGTCGTCCTGGGCTTGATTTTAGCCTCGggatgtgtgcatgtgtcttaTTGTGAGGGCACCCAAGATGAAGTTATTAGCCCTGCCATGTCTGTTATCTGGGGTGCTGGACTCCAACCCAGAGTTGTCCTGCCTGTTCGATACTTCTACATCCAAGCCGTGAGTCCCACTGGACAAAACCTCACCTATTCTCCAGGAAAAGAAGCTTTTGTGGTGAGAATTTCCTCTCTGTCACCTAAGGAACACATCCGTATCCATGTGCCAAAGCCCTTGGACAGAAATGATGGCTCATTTTTGATGAGGTACCGTCTGTATGGCAGCGCCAATCAGGGCCTGAAGATTGAGGTGTTACACAGGGATAAGCCTGTTGCAAAGTCCCCATACATCTTAGAAGGGCCAGTATATCATGAGTACTGTGACTGTCCAGAGATGGACCCCCAAGCGTGGCAGACTGCAATGTCCTGCCCTGACCAGGAGCCTCAGATCTCCATGGACTTCGCCAGCTTCCCTCAGATCGACCTGCAGCGTCTGCGCCAGGAGGTCCCAAAGCGCTTCAGCCAGAGAGGGGGACTCATTCATTACACAGTGGTCAACAACCAGGTCTATCGCCAGACCCTGGGGAAGTACACAGACTTTAAAATGTTCTCTGATGAAATACTGCTTTCCCTGACCAGAAAGGTGCGCTTGCCCGATGTGGAGTTTTACATTAACGTGGGAGACTGGCCCATGGAGAAGCGCAAAGTGAACGACACTCCCGGTCCAGTGCCAATTATTTCATGGTGTGGCTCCACAGACACCAGGGACATCGTGGTGCCCACCTATGACATCACACACTCCACACTGGAAACCCTGCGAGGCGTGTCCAACGACCTGCTCTCCCTACAGGGGAATACAGgcCCTCCATGGAGCAACAAGACTGAGCAGGCGTTCTTCCGGGGCCGGGACAGCCGAGAGGAGCGTCTCCAGCTGGTGCAGATGTCCCGGCAACACCCCGAGCTCCTGGACGCTGGCATCACTGGCTTCTTCTTCTTTAGAGAGCGGGAGAAGGAGCTGGGGAAGGCCTCTCTTGTTGGGTTCTTCGATTTCTTTAAGTACAAGTACCAAGTGAATGTGGACGGCACCGTAGCAGCCTACAGGTTCCCCTACCTGCTGCTAGGGAGCAGCCTAGTGCTGAAACAGGACTCCAACTATTATGAGCATTTCTATATACACCTGAAGCCAGGGAAACACTATGTGCCAGTGAAGAGGAGCCTCTCGGACCTCATTGACACGATCAAGTGGGCTAAGGAGAACGATGCTGAAGCAGAACAGATTGCCGGAGCTGCACAAGCTCTGGCCAGAGACCTCCTCCAGCCTAACCGACTGTACTGCTACTATTACATGGTGTTCCAGAAATATGCCGAGCGTCAGACCAGCAGGCCTGAGGTCCACGAAGGAATGGAGCATGTGCCTCAGCCCAGTGACGGGGACTCCTGGTGTACCTGTCACCGGAGCCCACAGGGGAGCTCCCAGAAGAAGGACGAGCTCTGACCCCCAATCTCTCTTCAGAGTCACAGAAGACCGGCACAATTCAGTGGTAAATTATCATTGCCCTGTTGTACCCAAGGGGCtgaaaaatcacattcaatCTCTAGAGGCCTGAAATGTGTCTCGGGTCACCAGTGAAGGGGCAAGCAAGACAAAGGAGACTAATAATAAGCAAAAATAAGCATAACGTAACCAAACCGTTTATTGCTTATTTCCCAATGGAGTTTACTGCAGCCAATCCAGCAACCTGTCTGCTCAGTTAACTAGAATTTGCTGCTTCACATGGAGCAGTAATTTCTCACTCATTCTTGGGATGCAGAGTGTACTGTAAGACCCTTGTGTTCAAGGCTGAGTTATTGTAAGTGTCTTCCATAGTTCtggtaaaaatacatacaaataaggGTTGTTGTTAAACTTGATGTGCCATAAGCTTTTATTTCTTCACAACACTCACCAGGAAGGTACTATACAtcacaaatgttgtttttgtttatggcCCTGAGGCTTGTGAGTTACTACATTTTAGCTATTGAAAACACATGAATGGATAATAGACTTTCATGTAGGTGGAATAGGTAGGTACAATCTTATGGGTGCCGGGGTATTTGTATAGTATGTTTCCAGGTACAAGGTGAGTGTCAAATGGATGAAAATGTTCCAAAGTGGGGCCTTATTTCTGACCCTGAAATGTTGGCTGTAGTCATTGAATGCTAATATTGTGGTAGTGAAAGGATGAGAGAAAATAGCTTTAGGCTTTGCTGCCTGGTTCTGTTTCCACCCTCCCCCCAGAGACGCAGTAACACTCAGAGAATGGAATCACTAGGTGGGAACATGACAACAGTCTTGTGACGTCAGGTGCCACTTATCCTTTCTAGAGAAACTCGGGTGAAGTTTGTTGCAAGTGCAATTACAGCAGCCCTTTCAGAAGATTTTAACGCATAGTAGGAGTGCCTTGCTCTGAACGGTTTGCAGCCCATTTAGGGGAAAAAAGGTACATTTACTGTGGAGCCTGCCACATAGTACAATTCAGTGATTCATCCATACACCACTTGTTATATTTACTCTTTAACCAAGGCTATTGTAAAGACTTAATACATTGAAGAGAATTTGtaaagtttacatttatttaaatgccacTTTCACAGAAATCATATTAAGGTAATTTCTGGATATATCcatgtttgtatttctattcCTCTTGATCGTGTCTTTATATCATTatgagtgaaaatgtttaatggtgcatttgtatttttaatacatttatactgatgttttattttgcacatttttcaaatatttattgcaCAATAGTTGTGAGTTtagtttcttaaataaaaacaatatacc

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016442 True 3195 mRNA 0.46 8 20031431 20040137

Neighbor

gene id symbol gene type direction distance location
AMCG00016445 NA coding downstream 411 20017380 ~ 20031020 (-)
AMCG00016444 NA coding downstream 23720 20005923 ~ 20007711 (-)
AMCG00016440 NA coding downstream 51507 19969592 ~ 19979924 (-)
AMCG00016437 NA coding downstream 149606 19880271 ~ 19881825 (-)
AMCG00016433 NA coding downstream 156537 19872617 ~ 19874894 (-)
AMCG00016443 NA coding upstream 3213 20043350 ~ 20060165 (-)
AMCG00016446 NA coding upstream 31611 20071748 ~ 20082592 (-)
AMCG00016447 NA coding upstream 42517 20082654 ~ 20083255 (-)
AMCG00016452 NA coding upstream 49432 20089569 ~ 20094925 (-)
AMCG00016454 NA coding upstream 105676 20145813 ~ 20146301 (-)
G13615 NA non-coding downstream 26491 20003149 ~ 20004940 (-)
G13414 NA non-coding downstream 772874 19258323 ~ 19258557 (-)
G13413 NA non-coding downstream 774512 19256638 ~ 19256919 (-)
G13392 NA non-coding downstream 778017 19165586 ~ 19253414 (-)
G13366 NA non-coding downstream 942799 19088224 ~ 19088632 (-)
G13680 NA non-coding upstream 275605 20315742 ~ 20316579 (-)
G13762 NA non-coding upstream 428109 20468246 ~ 20513404 (-)
G13766 NA non-coding upstream 446744 20486881 ~ 20492021 (-)
G13789 NA non-coding upstream 555192 20595329 ~ 20598765 (-)
G13806 NA non-coding upstream 606699 20646836 ~ 20652268 (-)
G13367 NA other downstream 926050 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 2490089 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 2764684 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 3161429 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 3170252 16858541 ~ 16861179 (-)
AMCG00016453 NA other upstream 88771 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 576372 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 626005 20666142 ~ 20683024 (-)
G13962 NA other upstream 3414955 23455092 ~ 23455811 (-)
G13969 NA other upstream 3659012 23699149 ~ 23700255 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019069 poglut3 coding NC_007132.7 CM002905.2 35041399 ~ 35056093 (+)