AMCG00016443


Basic Information

Item Value
gene id AMCG00016443
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20043350 ~ 20060165 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016443
GTGACTTTTACTGAAATGAGAAATCTTGTTGGAGTTAATGAGCAAACACAGGCAAGAAGAGAGCAATGTCACTGTGATACACCCATGTTTGCGCAGCATACCTGTTAAACACAAAGTGGAAAACTGGAGCTGATAAGATTGACATACTTCTTGCTCAGGAACCTGAAAGCTACCAGGcagttcttcattttgtttaatacgAGACCGTTTGATTTTGATTGAATTCACATTTAGCTACACCAGCGACTGGGTGAAACAGGAACATGCCAGAAATCAACTTGCATTGAAATTGGGAAGGAACCGTTATTACCAGTTCATCAGGTAGAAAATAAGGAGGACCAAGtcgacctgagagagagaggataaagAATAGGTCTGCCTACACCTACCGGCCAGTGCTCAGTGGTGCCATTTCGGCTGGCTAGGCTTGGTGCGCTCAGGTGCGCCTGCAGCGATGGAGGCGTTATTGGACGCTTACGCACTGTGCCGATCGAGGGATAGGCTTCAGCCTTAATTCCAAACCGCATTTTTGGAGTGTTTTTGGCAACCTGTCTATGGGAAAATGCACCGGAGCATTAAGGGTTAAGAGCAAACcagcgtaaaaaaaaaaaaaagaaaaacaagaacacccAGGTATAATGACAACAGCCGCCAAAAACTTGGATCTGGGTTTCTTAAACGAGGAAGAAGCAGACTCGATCTTGGGAGTGCTGAAGCGAGACGAGCGGCTGAAAACCTGCGACAAGGAGAGGATCGGGCGACTTCAGCATGCAAGAAAAGACCTGACGTGGCTGAAGGGAGTAACTGGACAGTGGTTTGAGGATATACAGAGGAACAAGTACAAAAATGAGTCCAGTGTGAATGCTGTCCTACAGCAGTCTCTCACTGTCAAAGTTAAGAAGAAAGTCCGACCGGAGCTTAaatttggaaaaacaacaagttTAGGAACACACAACGATGAAGCGAGTGTTGGTGCTAATCCCAATGGCAGCTCCTTCCGAAATCGACTGACTTCATTATTCAACTTAAAAAGCTCACGGAAGCGTATCGCCCAAGAAAACCAGAAAGAACATAGGAGCAGACAAACGGTGAAGGCACACATGATgaggaaagcaaacaaaccagtAAAAGAGAAACTCACCACTGgtctgtcagcaagaacagagATTCTGCTGATGTTCAAGAGGACATATTTGCTGGAAGAGGAGAGTGCACCTGTAGAGGCACAGGAAGAAGAGAGTGCACCTATAGAACCTGAGGAAGAGGAGTGCGCACCTGTAGAGCCACAGGAAGAGGAGTGCGCACCTGTAGAGGCACAGGAAGAGGAGAGCGCACCTGTAGAGGCACAGGAAGAGGAGAGCGCACCTGTAGAGGCACAGGAAGAGGAGAGCGCACCTGTAGAGCCTGAGGCAGAGGAGAGCGCACCTGAAGAGCCTAAGGAAGAGGAGAGCACACCTGTAGAGCCTGAGGAAGAGGAAAGCTCTCCTGTAGAGGCACAGAAAGAGGAGAGCGCACCTGTAGAGGCACAGAAAGAGGAGAGCGCACCTGTAGAGCCTGAGGAAGAGGAGAGCGCACCTGTAGAGCCTGAGGAAGAGGAGAGCACACCTGTagaggcagaggaagaggagagcgCACCTGTAGAGGCTCAGGAAGAGGAGAGTGCCACTGTAGAGGCAGAGGAGAGCACTCCTGTagaggcagaggaagaggagagcgAACCTGTAAAGCCTGAGGAAGAGGAGAGCACTCCTGTGTCAAGCAGCGAACCGTGGCCTCCCGTGATTGGTGCTTCAGAGTTAAAGAGGAGTCGATCACTAAACGATCTGCATTCACAACCGCAAAGCAATGAGCAAGACAATAGCCCTGAGGATGGCTTTAACTCTGTAATTGCCAAGATGTCCTCAGTGGCTTCAGATGTATGCAGATACTACACAGGGGGCATGAGGGGACTGCTGGAAGTTAAAGAAAAGAGAGATCTTTTTGGTTTCAATCGTGCATACAGTGAGGATTTCTCTGGACCACATGTTCACAGGAATGCCATTTCTCAACCTCGTTTCATTCTTAAGAAGCAATCGCACGCAGATGGAGAGTCTTTTTATGGATACAATAGCATGGACAGGAAAAGATCTCTTGGTCATCAAAACGTTTCTCAACCATTTGGGAATGGAAATAGTAAAGGAGTGAGCTGGCTTGTGGACAGTGAACGGACAACAGTAAAGAGCCCCATTTCTGATGTTGCCTCTGCAAAATTGAACAGCAGGTCACCGGTCACATCACCAGTTGTCTCCCATCAAAAACAATATCCTGCACAAGAGAGATTCCAGTACCAAAGGATTTCACAGGATAATCCACAGAGCGCCTTGGGATTAGTTTCCCCTATGAGTCCAAAGTCATTAACAAGCCCTTTATTTCCAATGAGGAGATATAACTCTGTAACCATTTTCTCTAGCAGCATCCCTTCTGGTCACAATGAGAAGAGTTCTCCCACGTATGGCACACCCTACACAAGCACTCCAAAAATTAACTTGGCTGAGCCACGCAGAGTTAAAAAAGGTCCCTACCATACAACGTCCCCTAGCACTGAAGGGAAAACTCCAACCTCCCCATTGAGAAACAGCAAGGGAGACCTTTTTCATAACTATGGGGAAACTTCAAGAGAAGAGATTTCAAGGACCAAGACCCTGTCCATTAACCCCAGCTTCAGCCCCCCACCACAAAACCAGGCCAAGACTGACAACATGTACACAGCACAGCAAGGTCCAGGAAGTAACAGCCCTGACAGCCACCCCCATCAGCTCTGCCTTGCTAGGAAGAAGCATTACATGTCGGAAAGATCTCCTACAAGCTATATGCGCCATTCATCTGATAAAGAGAGTTCTCCAAATGATGTTAAGACCTACACAGTCTCAACTCAAAGCCCTATGGAAGCTTATTCTCCTGCTGTTCAGAGAAACCGGTCCCAATGGTCCCCAAGTCCTGGTCTGTCTAGTACTCCTGCATCACCATCCAGATTCCCCCACAGTGGGGACAGTCCAAGGACTTATTTGTCCCCGCAACACGTCAGCCCAGCCCAACCAACATCGCCAGCGAGATCATTTTTGGATCAGGAGTCGAAGGGTGATGGCCACTCCATGCCTTCTACACCCAGTTCTGATGACAGGAGGTTTGCATACAGGCGCAACATCATTAACAGCCATCCCAGCTCACACTTTGTCTTTGATTTCCAAAATGACATCAGCTCACCAAAAGACAAGATTCAGAGCCACTCCCTAGATGTTCCTGACCACTCCCCTCAGTCCCTGTCTCCAGGATCACCCAGCAGATACAGGAGAAGACTGAGCCAAGCATCCACCAACAGCTCTGCCAGACCATCCCACAGCAGTGACTCTGAGCAGCTGTCACCCCTCCACAATCATCACAGAAGAGCCAAGTCATATAACTTGTACCAGGAGATGGAAGACAACAGCCCAACTTGCATCCTCCATAGTCCTCTCACTGATGCCAGACTAAGGTCTACGTCTGAAAGGATTCATAGTATAGCAATGCAACATAACCTGTCCCCCAAGCactctgcaaaacaaagtgaaagTGACAAAGTAATGAAATGGGAAACAACTGGGACAAATTGCACCGTTTTCCCAGAACAACCTGCACTTTTGAAACCGAATCTGCAGGGCCACATTACGGATACAAATACTGTAACTGATCAAAGGATGTATGAGGAAAGGTACTCCCCCAGTTACAAAAGAGACACCTCACAAAACATGTCACCTGAAAACTTTCAAGTTCCTCAAAGGCAATCAGTTTGTAATACATTTCCTGGAAACAGTTACAACAATACATATGTGGACAATAGCGATGTTTTGCCAACTGCAACcagggaaataaatacagttgGCAGTACAAAGCTACAGAATACTGTAGATCATACCCCACTAACCagacaatacattttcagagacAAAGGAAAGATTGTAAGTAAGGTCAGCCCAGCTGTGCCAAATGATTGTATAAAGATGTCTGAAAGTTCTACCCTGGATCTCCCACAGAAGAAACAAGTCATGAACAGAAATCGGTTACCAATTAGGAGGATTCAAGAAAAAGGCAGCCCACCCAGCTCCAGTGTGGACAAGCAGCAAGTGTCTTGCCACCTTTCTTCTTCTGACAGAACCGGCAATGATACTGTCTTAAAGAAAGGCAGTAAAGTTGAACAAGTGCTGCACCGTACAAAGTTGACTTTCAGTGCCAAGTGGGTTGAAGACGAGATACTTACAACAAGGAAAAAGAGCAAGAAGATGGATGAGGGCTCCCAAACCAGCTCCACACAAAGTTCTGAAACCCACGAGAATGTGGAGACCATTGAGGAAGTGATCAGGGTGGTATTAAAGCCCTCcaacaatgaaaacaagctGGCAAATAACAATTACAGACTGCAGTATTCTGACATCCAATGGTTATGTCCACCAAGAAAGAACAGTGAACCTGAGGACATGCAGTTCAAAACTTATGAAAATGTCAGTGGttcagaaaaactgaaaaatgttaatAGGAGCCAGTCCTCCCCAGCTGAGGACTACAAACCAATTCAAAATCAGGCTTACAGTTATGGTACAATACCTGGATGCAAAAAGTCCTCTTCTGGAGCAAGATTCAGCAAATACAGGTTGAACTATGATCCAGAagatttggaaaataataacgAAGTCTTTTACAGTAATAGGAAATCATCAGGGCAGCCCAGCAGGAAGAAGACTGTCTCGTTTTCTGAGGATACAGAGAGGGCCGCTGGTGAAACCCTCACCAACGCAAAAAGCATGAATGCCGTTGCTGAATGTTACTCGTCTGCCGATTACGGACTGAAACATGGCCGGTCCTATTCTGTAAACAGTTTCCAGAGCAGCCGGCCTTCTGGGTTTGACCGGATATCCACAGGCCCTAAAATCACAAGCGCTGACAAGCACAGCACTCTGACCAGGACACGCTCTGAGGTGCTTACCTGCGAACCAGACCAAAGTCCAGCAGAGAGTGACAAGGCAGGCAAAGGTAAAACTCTTCTTAAGACCAGCAATGGGTACAAAGTGAAGCCTCCCGACACTTCCATATACAACGCAGAGCAGCAGGCTTTGTATTTGGACCAGATTAAGAAATCCCTGACCGTGGGTAGGCTATGGAAGCCAGGCTGCCTTGAGAACCTTCATTCCCACAAGGATGAAGAGTCTCCCTCTTCTCAGAGTCCCACATCAAGGCTGCTTAGCACTTCTTCCACCAGTAGCTTCACCTCCATGGAGAGCCTGTCTCCTCTCGGGCCTCTGGCCTCTCGGGGCTACAGAGGCAGCCAATCAACCTTCGAGGAGTCTGACTCCGACACCACCACGGACGACGAGTACTACCCGAACATTGATGGACCCGCCAAAGAATCAGAACTGTAA

Function

GO: NA

KEGG:

id description
K22236 EXPH5; exophilin-5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016443 True 5429 mRNA 0.47 6 20043350 20060165

Neighbor

gene id symbol gene type direction distance location
AMCG00016442 NA coding downstream 3213 20031431 ~ 20040137 (-)
AMCG00016445 NA coding downstream 12330 20017380 ~ 20031020 (-)
AMCG00016444 NA coding downstream 35639 20005923 ~ 20007711 (-)
AMCG00016440 NA coding downstream 63426 19969592 ~ 19979924 (-)
AMCG00016437 NA coding downstream 161525 19880271 ~ 19881825 (-)
AMCG00016446 NA coding upstream 11583 20071748 ~ 20082592 (-)
AMCG00016447 NA coding upstream 22489 20082654 ~ 20083255 (-)
AMCG00016452 NA coding upstream 29404 20089569 ~ 20094925 (-)
AMCG00016454 NA coding upstream 85648 20145813 ~ 20146301 (-)
AMCG00016455 ddx10 coding upstream 195471 20255636 ~ 20282317 (-)
G13615 NA non-coding downstream 38410 20003149 ~ 20004940 (-)
G13414 NA non-coding downstream 784793 19258323 ~ 19258557 (-)
G13413 NA non-coding downstream 786431 19256638 ~ 19256919 (-)
G13392 NA non-coding downstream 789936 19165586 ~ 19253414 (-)
G13366 NA non-coding downstream 954718 19088224 ~ 19088632 (-)
G13680 NA non-coding upstream 255577 20315742 ~ 20316579 (-)
G13762 NA non-coding upstream 408081 20468246 ~ 20513404 (-)
G13766 NA non-coding upstream 426716 20486881 ~ 20492021 (-)
G13789 NA non-coding upstream 535164 20595329 ~ 20598765 (-)
G13806 NA non-coding upstream 586671 20646836 ~ 20652268 (-)
G13367 NA other downstream 937969 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 2502008 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 2776603 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 3173348 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 3182171 16858541 ~ 16861179 (-)
AMCG00016453 NA other upstream 68743 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 556344 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 605977 20666142 ~ 20683024 (-)
G13962 NA other upstream 3394927 23455092 ~ 23455811 (-)
G13969 NA other upstream 3638984 23699149 ~ 23700255 (-)

Expression


Co-expression Network