AMCG00016448 (abcg1,LOC108426925,LOC107684024,LOC107561305,LOC107677096,LOC107755138,LOC106612441)


Basic Information

Item Value
gene id AMCG00016448
gene name abcg1,LOC108426925,LOC107684024,LOC107561305,LOC107677096,LOC107755138,LOC106612441
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20104916 ~ 20126284 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016448
ATGGCAGCTTTTTCAGTTAACAACACTGCAGTTACGAACTCCATCATCATGAATACCAACGGCCCCCCTGACCTGATGCTGGATGCaagatcagtgtgtgtgtctgtggatgAGGTGGTATCGAATGGTGTGGGGCAGCAGCAGACCCCCCTGCTTCATGGGCACCTGAAGAAGGTGGAGAACAGCCTAACCGAGGCCCAGCGCTTCTCCTATCTGCCCCGTTACAAGACCTTGTTGAAAGGCATCTCTGGGAACTTCAGCAGCGGAGGTCTGGTTGCCATTATGGGCCCTTCAGGAGCCGGAAAGTCTACCCTCATGAATATCCTGGCTGGCTACAGGGAAACTGGGATGAAAGGCGAGATCCTCATCAACGGCCATCCCCGTGACCTCCGATCCTTCCGCAAGGTGTCGTGTTACATCATGCAGGACGACATGCTCCTCCCACACCTGACTGTACAGGAGGCCATGATGGTGTCAGCTAACCTTAAACTTCAAGAGAAAGACGAGGGCCGGAGAGAGATGGTGAAGGAGATTCTGACTGCCCTTGGACTGCTTGAATGTGCCAAAACACGGACGGCCAACCTGTCTGGGGGCCAGAGGAAGCGGTTGGCCATTGCTCTGGAGCTGGTCAACAACCCCCCAGTGATGTTCTTTGATGAGCCCACCAGGTCAGTCGTATCCCTCATGAAGGCCCTGGCCCAGGGGGGGCGCACAATCATCTGCACCATCCACCAGCCCAGTGCCAAACTCTTCGAGCTGTTTGACAAGCTGTATGTCCTGAGTCAAGGACAGTGTATCTACCGAGGCAAGGTCTCCAGTCTGGTCCCTTATCTTCGGGAGCTGGGACTCAACTGCCCCACGTACCACAACCCTGCAGACTTCGTGATGGAGGTGGCCTCGGGGGAGTACGGAGACCAGACCTCTCGGCTGGTGAGGGCCGTGCAGGACAGGAAGTGTGAGAAGGACTACAAGACCGAGACGAATGGGGACAGGCCTCACAACCCCTTCCTGTGGCACAGACCCTCAGAGGAGGAttcctcctccacagagggctGCCACAGTTTTTCTGCCAGCTGCCTGACTCAGTTCTGCATCCTGTTTAAGCGGACCTTCCTCAGCATCATGAGAGACTCGGTCCTCACTCACCTGCGCATCACGTCTCACATCGGCATTGGCATCCTGATCGGCCTGCTGTACCTGGGCATCGGCAACGAGGCCAAGAAAGTGCTGAGCAACTCCGGGTTCCTCTTCTTCTCCATGCTCTTCCTCATGTTCGCCGCCCTCATGCCCACCGTATTGACCTtTCCTTTGGAGATGGGGGTGTTTCTCAGAGAACACCTAAACTACTGGTACAGTCTGAAGGCCTATTATCTTGCTAAAACCATGGCTGATGTGCCCTTTCAGATAATATTCCCCGTGTCGTACTGCAGTATAGTGTACTGGATGACATCGCAGCCCTGCGACGCCCTCCGCTTTACTCTCTTCTCTGCGCTAGGGACGATGACGTCACTGGTGGCGCAGTCGCTGGGGCTACTGATAGGAGCCGCCTCCACCTCTTTACAGGTGGCGACATTCGTGGGTCCAGTGACTGCCATCCCAGTGCTGCTGTTCTCGGGATTCTTTGTCAGCTTCGATACCATTCCTAAATACCTTCAGTGGATGTCATACATTTCTTATGTCAGGTACGGCTTCGAAGGGGTCATCTTGTCCATTTACGGGCTGGACCGCGAGGACCTGTACTGCGACAAGGACGAAACCTGCCACTTCCAGAAGTCCAAGGCCATCCTCAAGGAGCTGGACGTGGAGAACGCCAAGCTCTACCTGGACTTCATCGTGCTGGGGATCTTCTTTGTCACGCTGCGCCTCATTGCCTACTTCGTGCTGCGCTACAAGATCAGTGCTGAGAGAGCGGGCATGCTGCCATTCGGCTTTGCCACTCTGAGAGCCGTAGTGTGGTGCTTTGAGCTTCTTTGCATTATGCTCAGCCCAAAGGAGGTCCTCGCAGGCAGCCCGTGCACAGTCGTTTTCATCCGAGCCTga

Function

symbol description
abcg1 Predicted to enable ABC-type sterol transporter activity. Acts upstream of or within regulation of cholesterol efflux and sprouting angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human ABCG1 (ATP binding cassette subfamily G member 1).

NR:

description
PREDICTED: ATP-binding cassette sub-family G member 1

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K05679 ABCG1; ATP-binding cassette, subfamily G (WHITE), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016448 True 2040 mRNA 0.55 17 20104916 20126284

Neighbor

gene id symbol gene type direction distance location
AMCG00016449 NA coding upstream 40294 20059343 ~ 20064622 (+)
AMCG00016450 NA coding upstream 90007 20010296 ~ 20014909 (+)
AMCG00016451 NA coding upstream 95057 20007997 ~ 20009859 (+)
AMCG00016441 hgd,LOC102787666 coding upstream 98977 19998432 ~ 20005939 (+)
AMCG00016439 pola1,LOC107666635,LOC107705179,LOC107721886,LOC107586771,LOC104949401 coding upstream 166243 19911840 ~ 19938673 (+)
AMCG00016457 NA coding downstream 182695 20308979 ~ 20316754 (+)
AMCG00016458 NA coding downstream 202421 20328705 ~ 20331775 (+)
AMCG00016456 klhl15,LOC107727232 coding downstream 224364 20350648 ~ 20353506 (+)
AMCG00016469 NA coding downstream 254329 20380613 ~ 20392489 (+)
AMCG00016467 NA coding downstream 282019 20408303 ~ 20419818 (+)
G13599 NA non-coding upstream 72000 20031493 ~ 20032916 (+)
G13593 NA non-coding upstream 86830 20014944 ~ 20018086 (+)
G13500 NA non-coding upstream 539804 19564800 ~ 19565112 (+)
G13496 NA non-coding upstream 592750 19511913 ~ 19512166 (+)
G13495 NA non-coding upstream 634460 19470175 ~ 19470456 (+)
G13659 NA non-coding downstream 93159 20219443 ~ 20256020 (+)
G13662 spcs2,LOC107677086 non-coding downstream 160791 20287075 ~ 20289834 (+)
G13681 NA non-coding downstream 192733 20319017 ~ 20319339 (+)
G13682 eif2s3,LOC107727229,LOC107686712,LOC107741782 non-coding downstream 215790 20342074 ~ 20345072 (+)
G13685 NA non-coding downstream 267227 20393511 ~ 20403506 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 225191 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 1631227 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 2505335 17562418 ~ 17599581 (+)
G13012 NA other upstream 2982984 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 3618913 16484355 ~ 16486003 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 1655822 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 3739983 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 3811767 23938051 ~ 23945024 (+)
G14057 NA other downstream 3953733 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 4353422 24479706 ~ 24561807 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008275 abcg1 coding NC_007126.7 CM002899.2 5028608 ~ 5074983 (+)
grasscarp (Ctenopharyngodon idella) CI01000092_01912280_01944807 ABCG1 coding CI01000092 null 1912280 ~ 1945217 (+)