AMCG00016449


Basic Information

Item Value
gene id AMCG00016449
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20059343 ~ 20064622 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016449
CAGGTTGCCAAAAACACTCCAAAAATGCGGTTTGGAATTAAGGCTGAAGCCTATCCCTCGATCGGCACAGTGCGTAAGCGTCCAATAACGCCTCCATCGCTGCAGGCGCACCTGAGCGCACCAAGCCTAGCCAGCCGAAATGGCACCACTGAGCACTGGCCGCGGGAGAACATACCTACATCATCcgtgtgttatttatttcaggatttTTCCATTTGCACGCAAACAATGGCAATCCCAGAAAAGACGACCCTGTTCCGGCAGGAGCAGCCCGGCGGGGTGACCTACAGGATCCCGGCCCTCCTCTACCTCAGCGACACGGACACTTTCCTGGCTTTCGCAGAGAAACGCTCTTCTCCCCTCGACAGTCACGCCAAATACCTGGTGATGAGGAGAGGGACCCTGAGGGATGGGGCTGTTCAGTGGGCGCCCATGGTGGATCTTCTTACTGCATGTCTGCCTGGACATCGGACCATGAACCCCTGCCCGGTGTATGAGAAGCAGACCAAAACCCTGTTCCTCTTCTTCATCTGCATCTGGGGAACCACTTCCGAGTGCCGTCAGATTTTGACTGGGAGAAACGCAGCCAGACTCTGCTACATTCGCAGCACCGACAATGGGAAGAACTGGAGCCAGCTGGAGGAGCTGACAGAGACTGTGATTGGCAGCAAGGTGAATAAATGGGCAACCTTTGCAGTGGGACCAGGGCACGGTATCCAGATGGATTGTGGGAGGCTGATCATCCCGGCCTACGTCTACTACATCCACTGCAAGTGCTGTTGCCTGCTGCCCTTGCCTTGCTGTGTTAAGCCTCATGCACTCTCCTTCTACAGCGACGACTGTGGAGAGACGTGGCACGTGGGGGATTTCATACGGGGTCTGAAGTCCTGCGAGTGTGAAATGGCTGAGATCGTGGACCCGGACGGAAGGAGTAGCTTGTACTGCAATGCCCGCAACACAAAGGGCTACAGGGTGGAGGCTCTTAGTGAGAAGAGGGGGACAGAATTTGACAGACCCCATCTGGCACCCAAGCTGGTGGAGCAGCCACATGGGTGCCAGGGAAGCGTGGTCAGCTTCCCTGTGCCAGAGCAGCTTGCCCAGAGGGGAGCGGGAGAAAACCAAGAGAGCTCCGGCCTGCTACATGACCACTCAGCACAAGGGATGGCCAAAACAtag

Function

GO:

id name namespace
GO:0001573 ganglioside metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0004308 exo-alpha-sialidase activity molecular_function

KEGG:

id description
K12357 NEU2_3_4; sialidase-2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016449 True 1176 mRNA 0.56 4 20059343 20064622

Neighbor

gene id symbol gene type direction distance location
AMCG00016450 NA coding upstream 44434 20010296 ~ 20014909 (+)
AMCG00016451 NA coding upstream 49484 20007997 ~ 20009859 (+)
AMCG00016441 hgd,LOC102787666 coding upstream 53404 19998432 ~ 20005939 (+)
AMCG00016439 pola1,LOC107666635,LOC107705179,LOC107721886,LOC107586771,LOC104949401 coding upstream 120670 19911840 ~ 19938673 (+)
AMCG00016438 NA coding upstream 161075 19885758 ~ 19898268 (+)
AMCG00016448 abcg1,LOC108426925,LOC107684024,LOC107561305,LOC107677096,LOC107755138,LOC106612441 coding downstream 40294 20104916 ~ 20126284 (+)
AMCG00016457 NA coding downstream 244357 20308979 ~ 20316754 (+)
AMCG00016458 NA coding downstream 264083 20328705 ~ 20331775 (+)
AMCG00016456 klhl15,LOC107727232 coding downstream 286026 20350648 ~ 20353506 (+)
AMCG00016469 NA coding downstream 315991 20380613 ~ 20392489 (+)
G13599 NA non-coding upstream 26427 20031493 ~ 20032916 (+)
G13593 NA non-coding upstream 41257 20014944 ~ 20018086 (+)
G13500 NA non-coding upstream 494231 19564800 ~ 19565112 (+)
G13496 NA non-coding upstream 547177 19511913 ~ 19512166 (+)
G13495 NA non-coding upstream 588887 19470175 ~ 19470456 (+)
G13659 NA non-coding downstream 154821 20219443 ~ 20256020 (+)
G13662 spcs2,LOC107677086 non-coding downstream 222453 20287075 ~ 20289834 (+)
G13681 NA non-coding downstream 254395 20319017 ~ 20319339 (+)
G13682 eif2s3,LOC107727229,LOC107686712,LOC107741782 non-coding downstream 277452 20342074 ~ 20345072 (+)
G13685 NA non-coding downstream 328889 20393511 ~ 20403506 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 179618 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 1585654 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 2459762 17562418 ~ 17599581 (+)
G13012 NA other upstream 2937411 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 3573340 16484355 ~ 16486003 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 1717484 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 3801645 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 3873429 23938051 ~ 23945024 (+)
G14057 NA other downstream 4015395 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 4415084 24479706 ~ 24561807 (+)

Expression


Co-expression Network