AMCG00016453


Basic Information

Item Value
gene id AMCG00016453
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20128908 ~ 20135547 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016453
ATGTCAGAGACGAGCGGAAAACTTAGTGGTGGTGCCGTGAGGTTTGGCGCCACTTATGAAAGCAACAAGATGTTCGGAGGCAACAGGGGCAGCTCTGGAGCTGCCTATGGGCTCTCGAGATccctgggtggggggggtgtaggGTCTGGATATGGtctcagaggaggaggaggaggtctGGGCATGGGCATAGGCATGGGAAGTGCGGCTGGATTGGGGTTCGGAGCTGGATATGGAGGAGGCATTGCCGCAGGGGCCGGTTTTGGTTACGGTGGGGGGATGGTGCCCACTGGCATGAtgatgggaggaggaggaggagggctgGGCTTGGGGGGGGGTGCTATGGCAAGCAGGATGGCAAGCTTCAGGGCGGGTGTCGCCCCGCTGAGGGCTCGTCTGGGTGGCCGTGTCTTCAAAATTGGGGGCTTTGGCTTCAACCCTTCCTTCATAAGCAGCACCACCACAGTGGACACGGGGATCATCCCTATGCCCAGCATCGACCCCTCCCTGCCCTCGGTGGACACTGTGCAGGTCACCCGTCTGAAAGAGAAGGAGGAGCTGCAGGTTTTGAACGACAAATTTGCCTCATTCATTGACAagGTCAGATTCTTAGAGCAGCAAAACGCTGTTCTGAGAGCCAAGATTTCGATGTACACCAACCCAGACCAGAATGGACCTGCAAGCTCATCAATCATCCTGACCTCTGCCATCGGGGCTTACAAGTCCCAGATTGACACCCTGACCGCCACCAAAGAGGCAATCCTGGCTGAGATCGAACACTTCAAAGCTGTGATGGATGATGTCCAAGCCAAGTACGATGAGGAGACATCAGTGACAAAGTCTCTGGAGTTGGAGTGGACCACACTGAAAGAGgaGGTGGATCATTTGTACATGACCATCTTTGAACTGCAAACCAACATCGTGGGACTGGAAGATCAGATTGTCCTTTCCAAGCAAATTTATGATGCTAAAGTGAAGGAGGTCAGGAACATCATATCCGGGGGTGTAAGATCTGCCTTCTCCATCTCGGTGGATAATGCGGCCCAGGCGCAAGACCTGAGCTCGGCCCTGACTGAAGTGAAGGCCCACTACGAGCACCTGGCACAGCGGAGCAAACAGGACTCTCTCCTGGCGGTGCAGGACACGATCTCCATGATGTCTGGTAGCACCCAGCCCAATGTCCAGGCCCTCACTAACACCAAGGAGGAACTGCGGCTTATAAAACTACAGATCGACTCTATCCTCAGGGAGGTCGACCGACTGAAAACAGCGAACCTCCAGCTGGAATCTCAGGTTTCAGACGCTGAATCCCACTCCAGCAGCCACACTGAGCAATACCAGGAGACCGCCATCACTCTGAAGTCGCAGCTTGATGACCTCAGAAAGCAAATTGCTCATTATGGCCAAGAGTACCAGGAACTGTTGGCCAGCAAAATGTCCCTAGATGTGGAGATCACAGCCTACAAGAAGCTCCTGGACAGTGAGGAGAGCAGGCTGAAGTCCGGGGGAGGAGTGACCGTCCACATGTCCAGGACGTCAGTGGGCAGCGGTGGAGGAGCCGGCATTGGGATGGGAGGAGGTGGTGGCATGGCCTTGGccgcaggaggaggaggaggcggcggcAGCTATGGAGGCGGCTATGGTGGCGGCTATGGAGGCAGCCTTGGaggaggtctgggaggcggCCTTGGAGGCGGCCTAGGAGGAGGCTCAGGTCTCGGTTTAGGATCGAGCTTTGGAGGAGGCCTTGGTCTGGGAGGCGGCTACAGCCTTGGTGGGGGCCTGGGCGGCAGCTCGGCGGGCTTTGGCATGGGCAGCAGCGCCGGGGGCAGCTTTGTGTCCTCCAGCCTCAACAGCAGCACA
>TU16905
GGAGTACTTGCTTACCTGGAGGACTCAAGGCAGACACCTACAAACCCCCTTTATTGAGCCAAGATGTCAGAGACGAGCGGAAAACTTAGTGGTGGTGCCGTGAGGTTTGGCGCCACTTATGAAAGCAACAAGATGTTCGGAGGCAACAGGGGCAGCTCTGGAGCTGCCTATGGGCTCTCGAGATccctgggtggggggggtgtaggGTCTGGATATGGtctcagaggaggaggaggaggtctGGGCATGGGCATAGGCATGGGAAGTGCGGCTGGATTGGGGTTCGGAGCTGGATATGGAGGAGGCATTGCCGCAGGGGCCGGTTTTGGTTACGGTGGGGGGATGGTGCCC

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016453 True 1863 mRNA 0.57 9 20128908 20135484
TU16905 False 351 TUCP 0.58 1 20135197 20135547

Neighbor

gene id symbol gene type direction distance location
AMCG00016452 NA coding downstream 33983 20089569 ~ 20094925 (-)
AMCG00016447 NA coding downstream 45653 20082654 ~ 20083255 (-)
AMCG00016446 NA coding downstream 46316 20071748 ~ 20082592 (-)
AMCG00016443 NA coding downstream 68743 20043350 ~ 20060165 (-)
AMCG00016442 NA coding downstream 88771 20031431 ~ 20040137 (-)
AMCG00016454 NA coding upstream 10266 20145813 ~ 20146301 (-)
AMCG00016455 ddx10 coding upstream 120089 20255636 ~ 20282317 (-)
AMCG00016463 spcs2,LOC107677086 coding upstream 149775 20285322 ~ 20289785 (-)
AMCG00016462 kpna1,LOC102776202 coding upstream 156755 20292302 ~ 20303074 (-)
AMCG00016459 NA coding upstream 199341 20334888 ~ 20339043 (-)
G13615 NA non-coding downstream 123968 20003149 ~ 20004940 (-)
G13414 NA non-coding downstream 870351 19258323 ~ 19258557 (-)
G13413 NA non-coding downstream 871989 19256638 ~ 19256919 (-)
G13392 NA non-coding downstream 875494 19165586 ~ 19253414 (-)
G13366 NA non-coding downstream 1040276 19088224 ~ 19088632 (-)
G13680 NA non-coding upstream 180195 20315742 ~ 20316579 (-)
G13762 NA non-coding upstream 332699 20468246 ~ 20513404 (-)
G13766 NA non-coding upstream 351334 20486881 ~ 20492021 (-)
G13789 NA non-coding upstream 459782 20595329 ~ 20598765 (-)
G13806 NA non-coding upstream 511289 20646836 ~ 20652268 (-)
G13367 NA other downstream 1023527 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 2587566 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 2862161 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 3258906 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 3267729 16858541 ~ 16861179 (-)
AMCG00016479 NA other upstream 480962 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 530595 20666142 ~ 20683024 (-)
G13962 NA other upstream 3319545 23455092 ~ 23455811 (-)
G13969 NA other upstream 3563602 23699149 ~ 23700255 (-)
AMCG00016504 NA other upstream 3705515 23841062 ~ 23862739 (-)

Expression


Co-expression Network