AMCG00016455 (ddx10)


Basic Information

Item Value
gene id AMCG00016455
gene name ddx10
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20255636 ~ 20282317 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016455
ATGACGGGCGAAAGTAAGGGGAAAAAGGCGAATGTTTccaagcagaagaaaaagggAGGCAACAGCAGAGACACCCAGGACCCCGTGAAGAACTTCGAGCGATGGAAGAAGAAATACAACAAGATCAAATCCAAAGTGAAACGTGAGAAGAAACGCAACAAGAAACCCGAGTGGCAGGTCGAAAGGGAGAATATCAACAATCTCGTCAGCAAGTACCAAGAGATAAACGCGACAGATGCGGTGAAGTTTTCGGATTTCCCTCTCTCTAAGAAGACGCTCAAAGGGCTGTTGGAAACAAAGTATCGGCTGCCCACGGAAATCCAGAGGCAGACGATCGGCTTGGCACTGCAAGGCAAGGACGTGCTGGGAGCAGCCAAGACTGGCTCTGGCAAGACGCTAGCCTTTCTCATCCCTTGGACGGCTGACGACGGGCTGGGCGCTCTTATCATCTCCCCCACCAGAGAGCTGGCCTACCAGACCTTCGAGGTGCTGCGCAAAGTCGGGAAGAACCATGAGTTCTCTGCCGGGCTCATCATCGGGGGAAAGgaTCTGAAGCACGAGTCTGAGAGGATCCATCGTACCAACATTATCATCTGCACCCCAGGCCGCCTCCTGCAGCACATGGATGAGACGATGGCTTTCCATGCCTCTTCACTGCAGATCCTAGTTTTGGATGAAGCAGATCGCATTCTGGACATGGGCTTTGCTGACACGATGAATGCCATCGTGGAGAACCTCCCCAAGACCAGGCAGACCCTGCTGTTCTCTGCCACACAGACCAAGTCGGTGAAGGACCTGGCCAGACTCAGCCTGAAAGACCCAGAGTACATCTGGGTGCATGAGAAGGCCAAATTCAGTACCCCAGCGACTCTAGAGCAGAATTATGTCGTCTGTGAGCTGCACCAGAAAATCAACATGCTCATCTCCTTCCTCAAGAACCACACTAATAAGAAGATCATTGTGTTTTTTGCCTGCTGCAAAGAGGTGCAGTACCTGTTCCGCATATTCTGCCGCCTGCGCCCCGGGATCTCGGTACTGGCCCTGCACGGAAAACAGCAGCAGATGAAGAGGATGGAGGTTTACAACGACTTTATCCGCAAGAAGGCAGCTTTTGACTGTCCCGAGGACGCCAACACTTATATCCACAGAGTGGGAAGAACGGCCAGgTACAAGGAAGGTGGGGAAGCCCTGTTAGTTCTCCTGCCATCAGAGGAGCCAGGGATGCTCAAGCAGCTTGAGGAAAGAAAGGTGCCCATTAACAAAATCCAGGTGAATCCTGAAAAACTGACCAATGTGCAACAGAAGCTGGAGGCTTTCCTGGCGCAGGAGACGGAGCAGAAGGAGCGAGCAAAGAGGGTGAGTTACACACTTGAGGAGAAGCCACACAATCCCATGTGTACCTTCTTCTGGTTCTGGTCCTGTCACTCTCTGGTGGTCTTCAGTTTGAGTGACCAGTTTGTATCCTGTGGGATGAGACTGGATTTGTGTGACGCTCACTTGCAGGACCTGGCCTCCTCTGAGACCCAGTTGAGAACAGGCTTCTGCCAATCGAGAGTTTCTCATGAAAAGGGAACTTGCCTATTCACAAACAtctggtttcattttcagtgcTTTATGTCCTACCTACGCTCCATCTACCTAATGAAGAACAAAGAAGTCTTTGATGTCTTTAAGATCCAGTTAACAGAATATGCTCAATCCCTGGGTCTTGCTGTGGCCCCTCGAGTCCGCTTCCTGCTCAATGCCCAGAAGCAGAAAGAGGGCAGTGCACCAGTCCAGCCAGAGGAAGACCAATCTGGCACTGAGGAAGAGCTGGAGAACTTCAGATCTCAGCTCCGAGGGGACAAGCACCCTGAACGGAAGATGCCCCATAGTGCTGTAGCCAATCCTGaatcagaggaggaggaggaagaagaagaagaggatgAGGATGATGAGGATGCAATAGCAGCGACTTCAGAGATGAAGCTGGGGGCAGATGACGATGACGAAGATGACCTGAGAGACCTGGATTTTCTGACTGTGAAACGCAGGGACGTGTTTGGTCTGGAATCTGATCCTGAAGAGGTTGgttgtgtttga

Function

symbol description
ddx10 Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Predicted to be involved in rRNA processing. Predicted to be active in nucleus. Orthologous to human DDX10 (DEAD-box helicase 10).

NR:

description
probable ATP-dependent RNA helicase DDX10

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14776 DDX10, DBP4; ATP-dependent RNA helicase DDX10/DBP4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016455 True 2082 mRNA 0.51 13 20255636 20282317

Neighbor

gene id symbol gene type direction distance location
AMCG00016454 NA coding downstream 109335 20145813 ~ 20146301 (-)
AMCG00016452 NA coding downstream 160711 20089569 ~ 20094925 (-)
AMCG00016447 NA coding downstream 172381 20082654 ~ 20083255 (-)
AMCG00016446 NA coding downstream 173044 20071748 ~ 20082592 (-)
AMCG00016443 NA coding downstream 195471 20043350 ~ 20060165 (-)
AMCG00016463 spcs2,LOC107677086 coding upstream 3005 20285322 ~ 20289785 (-)
AMCG00016462 kpna1,LOC102776202 coding upstream 9985 20292302 ~ 20303074 (-)
AMCG00016459 NA coding upstream 52571 20334888 ~ 20339043 (-)
AMCG00016461 eif2s3,if2g,LOC106590489,LOC107727229,LOC107686712 coding upstream 59763 20342080 ~ 20355124 (-)
AMCG00016464 NA coding upstream 74916 20357233 ~ 20362210 (-)
G13615 NA non-coding downstream 250696 20003149 ~ 20004940 (-)
G13414 NA non-coding downstream 997079 19258323 ~ 19258557 (-)
G13413 NA non-coding downstream 998717 19256638 ~ 19256919 (-)
G13392 NA non-coding downstream 1002222 19165586 ~ 19253414 (-)
G13366 NA non-coding downstream 1167004 19088224 ~ 19088632 (-)
G13680 NA non-coding upstream 33425 20315742 ~ 20316579 (-)
G13762 NA non-coding upstream 185929 20468246 ~ 20513404 (-)
G13766 NA non-coding upstream 204564 20486881 ~ 20492021 (-)
G13789 NA non-coding upstream 313012 20595329 ~ 20598765 (-)
G13806 NA non-coding upstream 364519 20646836 ~ 20652268 (-)
AMCG00016453 NA other downstream 120089 20128908 ~ 20135547 (-)
G13367 NA other downstream 1150255 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 2714294 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 2988889 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 3385634 16866318 ~ 16870002 (-)
AMCG00016479 NA other upstream 334192 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 383825 20666142 ~ 20683024 (-)
G13962 NA other upstream 3172775 23455092 ~ 23455811 (-)
G13969 NA other upstream 3416832 23699149 ~ 23700255 (-)
AMCG00016504 NA other upstream 3558745 23841062 ~ 23862739 (-)

Expression


Co-expression Network