AMCG00016459


Basic Information

Item Value
gene id AMCG00016459
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20334888 ~ 20339043 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016459
ATGGATGAAGATGGGCTTGATCTGAATGCACAGGAGCCGAAGATCATTTTTGATCGATCAGAGGCAGACGTGAGCGGCCATATTTCTGCGGGGGAGATTGTGGTGGAGCTGCAGGAGACAGTGTTTGTGTCGGGGGTGGATGGCTCCGATGTGTCCGTCCACAACTTCAGCCCTGAGGACCTGGACTCGGTGGTCATCCAGGATGCCATCGAAGACGTGGTGGCAGAGTACGTGCAGTGCGAGGACTCGGAGGCCGTGCTCATCGCCGAGGAGATGCTGGAGGCCGGCGTCGGGGAGGGGGACTCCGTGGAGCAGTGTGTGATCCCTGTAGGCAGCATGGTGTCTGAGGTGGAGACGGGGGCTGGGTGCACGGTGCAGGACAACGTCCTTGACGGAGATTGCATCGCGGAGCCTGAGGACGAGGCTGTGACAGACGCCGACGGCTCCCTCGCAGATATCCCAGTGGAGGCGCTGCAAGTAGACGTGGTCCCTGAGGAGGTCCTGGTGTCAAACTGTGCCCCCCAGGATGGCATGGACCCTGGgcaggaacagggctcctgtgAGAATTACCTCATGATCTCCTtggATGAGGCTAACAAGATGGTGCAGGATGGCAGTGAGGAGATCGCAGTAGGCCATGGCATGGAAGAGCAGAGCCAGCTGTCCAAGGACGACAGTGGGGAGGTCATCAAAGTGTACATCTTCAAGGCCGACTCGGGAGAAGATGATCTCGGGGGCACTGTAGACATTGAAGAGAGTGAGGTGGAGAATGACCACGGGGTGCAGCTGCTGGAGCAGCACGGGCGCGGCCCCAGAGATAAGATGGTGTACATGACGGTGGGGGGCTCCCAGCACAGCGAAGTGGACCTCAATGTGGCTGAGATGGCAGATGAAGTGTACATGGAGGTGGTGGTCGGGGGAGAGGAGGCGGTAGCACACGAGAGACAGTTTGACAACACCGTCCTGAGTAAAGACTTCATGCCAGTGGCCTGGGCAGCTGCCTATGGAAACGATGAGAGCGAGGGCTGCGAGAACCGGAATGGCGCAGCTAGTGCTCTGCTGCACATCGATGACTCGGTCAGCCCCGCAAAGGTGACCAAGCAGAAGACCAAGCAGAAGAGGAGGATTGATGCCAGGCAATTCCAGACAGCAATTATAATAGGGCCTTATGGGCAGCCTCTGACTGTCTATCCCTGTGTCCTTTGTGGCAAGAAGTTTAAGTCCCGAGGGTTTCTGAAGAGGCACATGAGAAACCACCATGAGGTTGTGAACAAGAAGAAGTACCAGTGCACTGACTGTGACTTCACCACCAACAAAAAGGTCAGCCTGCACAACCACATGGAGGTCCACAAGCTGACCAGCAAAGCAGAGAAGGCTGTGGAGTGTGAAGAGTGTGGGAAGGAGTTCTTCCATGCAGGGGCACTCTTCACCCACAAGGCACTGCACAGAGACAAAGGGGCCAGCAAGATGCACAACAAGGAGATGCCCTACAAGTGTGAGCGCTGCTTCCAGACCTTCTCGGAGGCCGAGGAGCTGTTGACCCACGCCTTGAGCCACGAGGAGGCGAAGACGCACCCGTGCGCACACTGCGACCACAAGAGCTCCAACTCCAGCGACTTGAAGCGGCACATCATCTCGGTGCACACCAAGGACTACCCCCACAAGTGCGACGTGTGCGCCAAGGGCTTCCACCGGCCCTCCGAGCTCAAGAAGCACATGACATCCCACCGCAGCAAGAAGCTGCACCAGTGCCGGCACTGCAACTTCAAGATCTCCGACCCCTTCGTGCTCAGCCGGCACATCCTGTCGGTGCACACCAAGGACCCGCCCTTCGCTGGCAAGCGCCGCAAGAGGACCTTCGGGCCGCGGGCGGAGCTGAAGAAAGGCGGCAGCAAGGTCCACCGGGAGCGGCGTGTCTACCAGTGCCAGTACTGCGACTACAGCACCTCCGACGCCTCTGGCTTCAAGCGCCATGTCATCTCCATCCACACCAAGGACTACCCCCACCGCTGTGAGTACTGCAGCAAGGGCTTCCGCCGGCCCTCCGAGAAGAACCAGCACATCATGAGGCACCACAAGGACATGGTGGTCGTTGAGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016459 True 2100 mRNA 0.59 8 20334888 20339043

Neighbor

gene id symbol gene type direction distance location
AMCG00016462 kpna1,LOC102776202 coding downstream 31814 20292302 ~ 20303074 (-)
AMCG00016463 spcs2,LOC107677086 coding downstream 45103 20285322 ~ 20289785 (-)
AMCG00016455 ddx10 coding downstream 52571 20255636 ~ 20282317 (-)
AMCG00016454 NA coding downstream 188587 20145813 ~ 20146301 (-)
AMCG00016452 NA coding downstream 239963 20089569 ~ 20094925 (-)
AMCG00016461 eif2s3,if2g,LOC106590489,LOC107727229,LOC107686712 coding upstream 3037 20342080 ~ 20355124 (-)
AMCG00016464 NA coding upstream 18190 20357233 ~ 20362210 (-)
AMCG00016460 kif3a coding upstream 33511 20372554 ~ 20379132 (-)
AMCG00016473 sat1a.2,sat1,LOC107562204,LOC107591482,LOC107725150,LOC107654323 coding upstream 54554 20393597 ~ 20398749 (-)
AMCG00016472 sat1a.1,sat1,LOC107654323,LOC107734365,LOC107665519,LOC107591481,LOC107725087 coding upstream 62345 20401388 ~ 20405776 (-)
G13680 NA non-coding downstream 18309 20315742 ~ 20316579 (-)
G13615 NA non-coding downstream 329948 20003149 ~ 20004940 (-)
G13414 NA non-coding downstream 1076331 19258323 ~ 19258557 (-)
G13413 NA non-coding downstream 1077969 19256638 ~ 19256919 (-)
G13392 NA non-coding downstream 1081474 19165586 ~ 19253414 (-)
G13762 NA non-coding upstream 129203 20468246 ~ 20513404 (-)
G13766 NA non-coding upstream 147838 20486881 ~ 20492021 (-)
G13789 NA non-coding upstream 256286 20595329 ~ 20598765 (-)
G13806 NA non-coding upstream 307793 20646836 ~ 20652268 (-)
G13812 NA non-coding upstream 422380 20761423 ~ 20761693 (-)
AMCG00016453 NA other downstream 199341 20128908 ~ 20135547 (-)
G13367 NA other downstream 1229507 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 2793546 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 3068141 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 3464886 16866318 ~ 16870002 (-)
AMCG00016479 NA other upstream 277466 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 327099 20666142 ~ 20683024 (-)
G13962 NA other upstream 3116049 23455092 ~ 23455811 (-)
G13969 NA other upstream 3360106 23699149 ~ 23700255 (-)
AMCG00016504 NA other upstream 3502019 23841062 ~ 23862739 (-)

Expression


Co-expression Network