AMCG00016460 (kif3a)


Basic Information

Item Value
gene id AMCG00016460
gene name kif3a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20372554 ~ 20379132 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016460
ATGATGGGGCACAAGCAGGTTGTCAGCGTGGATGAGATCTGTGGGACCATCACTGTTAATAAAAACCATTCTCCTAAGGAACCTCCCAAAACCTTCATGTTCGATACTGTGTTTGGACCAGACAGCAAGCAGCTCGATGTGTACAATTTAACAGCTCGACCTATCATCGACTCAGTGTTGGAAGGATACAACGGAACAATATTCACATATGGACAGACTGGGACAGGAAAGACCTTTACAATGGAAGGAGTAAGAGCAGTGCCTGAACTGCGCGGGATAATTCCCAATTCATTCGCCCATGTCTTTGGCCACATTGCTAAAACAGAAGGTGATACTAGGTTCTTGGTTAGAGTTTCCTATCTGGAAATTTATAATGAAGACGTGAGAGACCTGCTGGGAAAAGATCAGACACAAAGACTGGagGTTAAGGAAAGGCCGGATGTGGGTGTATACATTAGGGATCTGTCTGGCTATGTTGCGAACAATGCGGATGACATGGATAGGATCATGACTGTAGGGCATAAGAACCGATCTGTTGGAGCCACAAATATGAATGAGTACAGCTCTCGTTCCCATGCCATCTTCACCATCACAATCGAGTGCAGTGAGAAAGGTGTGGACAGAAATCAACACGTGCGGATGGGAAAGCTGCACCTTGTGGATCTTGCTGGTTCAGAGAGGCAAGGAAAAACAGGAGCTACGGGGCAGCGTTTGAAAGAGGCCACCAAAAtcaacctctccctctccactctGGGCAACGTCATCTCTGCCTTGGTCGATGGAAAGAGTACCCATGTCCCCTACAGGAATTCCAAGCTCACGCGAATCCTCCAGGACTCTCTGGGAGGAAACTCAAAGACCCTGATGTGTGCCAACATTGGGCCAGCAAACTACAATTATGATGAGACCATCAGCACTTTGCGATATGCAAACCGTgcaaagaatattaaaaacaaagctaaaATTAATGAGGACCCCAAGGATGCTTCACTACACCAACTCCAAAAAGAGATTGAAGAACTTAAGAAAAAATTAGAAGAAGGGGAAGAGATATCTGGCTCTGAAGGCAGTGGGTCTGAGGAAATGGAAGAGGACGACGGGGAAGGaggggagaaaataataaagtggaGAGGTACGGATGCTCAGCACAGGGCTCTCTTTCAGTTAGAGGAGAAACGCAAtaGAAAGAAGAAGGTCTCTCCTGACAAGATGCACGAAATGCAGGCCAAAATTGAGGAGGAGAAAAAGGCCCTAGAAGCTAAACTGGACATGGAAGTAGAAGAGAGGGACAAGGCCAGGGCAGAgctggagaagagagagaaagacctGCTGAAAGCCCAGCAGAAACATCGTCTTCTGCAGGAAAAGCTTTCTGCTCTGGAGAAGAAGGTGATCGTAGGGGGTGTAGACCTTCTGGCTAAAGCTGAAGAGCAAGAGAAACTCCTGGAAGAGTCCAATAATGAGCTTGACGAGAGACGAAAGAGAGACGAGCAACTTCGGCGAGagctggaggagaaggagCAAGAGCGTCTTGATATTGAGGAGAAGTATACAAGCATCCAAGAGGAAGCCCAAGGGAAGACCAAGAAACTAAAGAATGTTTTGACTATGCTGACGGCGTTGGAATTAGAGATGCCTGATCTACAACAGGAGCACGAGAGGGAGATCGAGGGGCTCCTGGAGAATATCAGACAGTTGAGCCGTGAGCTTTGCCTGCAGATGTTAATTATTGACTACATTATACCCCACAATTATCAGGAGATGATCAACAATTGTGTGCATTGGAATGAAGACATTGGAGAATGGCAGTTGCCCTTTGAGGTTGATCTGTCACATGTTTACCTGCCCTATACTGAGGAAAGCATAAGGCAGTCTTTGGTTAAGTTAGAAAGACTGAGGACGTCAAAAAGTGGAAAGTCGAGGCCTAAAACTGACAGG

Function

symbol description
kif3a Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Acts upstream of or within several processes, including Notch signaling pathway; cilium assembly; and photoreceptor cell outer segment organization. Part of kinesin complex. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Orthologous to human KIF3A (kinesin family member 3A).

NR:

description
PREDICTED: kinesin-like protein KIF3A isoform X4

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007018 microtubule-based movement biological_process
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016460 True 1938 mRNA 0.47 14 20372554 20379132

Neighbor

gene id symbol gene type direction distance location
AMCG00016464 NA coding downstream 10344 20357233 ~ 20362210 (-)
AMCG00016461 eif2s3,if2g,LOC106590489,LOC107727229,LOC107686712 coding downstream 17430 20342080 ~ 20355124 (-)
AMCG00016459 NA coding downstream 33511 20334888 ~ 20339043 (-)
AMCG00016462 kpna1,LOC102776202 coding downstream 69480 20292302 ~ 20303074 (-)
AMCG00016463 spcs2,LOC107677086 coding downstream 82769 20285322 ~ 20289785 (-)
AMCG00016473 sat1a.2,sat1,LOC107562204,LOC107591482,LOC107725150,LOC107654323 coding upstream 14465 20393597 ~ 20398749 (-)
AMCG00016472 sat1a.1,sat1,LOC107654323,LOC107734365,LOC107665519,LOC107591481,LOC107725087 coding upstream 22256 20401388 ~ 20405776 (-)
AMCG00016470 prdx4,prdx2 coding upstream 42822 20421954 ~ 20425750 (-)
AMCG00016471 NA coding upstream 62413 20441545 ~ 20447031 (-)
AMCG00016477 NA coding upstream 127716 20506848 ~ 20510468 (-)
G13680 NA non-coding downstream 55975 20315742 ~ 20316579 (-)
G13615 NA non-coding downstream 367614 20003149 ~ 20004940 (-)
G13414 NA non-coding downstream 1113997 19258323 ~ 19258557 (-)
G13413 NA non-coding downstream 1115635 19256638 ~ 19256919 (-)
G13392 NA non-coding downstream 1119140 19165586 ~ 19253414 (-)
G13762 NA non-coding upstream 89114 20468246 ~ 20513404 (-)
G13766 NA non-coding upstream 107749 20486881 ~ 20492021 (-)
G13789 NA non-coding upstream 216197 20595329 ~ 20598765 (-)
G13806 NA non-coding upstream 267704 20646836 ~ 20652268 (-)
G13812 NA non-coding upstream 382291 20761423 ~ 20761693 (-)
AMCG00016453 NA other downstream 237007 20128908 ~ 20135547 (-)
G13367 NA other downstream 1267173 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 2831212 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 3105807 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 3502552 16866318 ~ 16870002 (-)
AMCG00016479 NA other upstream 237377 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 287010 20666142 ~ 20683024 (-)
G13962 NA other upstream 3075960 23455092 ~ 23455811 (-)
G13969 NA other upstream 3320017 23699149 ~ 23700255 (-)
AMCG00016504 NA other upstream 3461930 23841062 ~ 23862739 (-)

Expression


Co-expression Network