AMCG00016462 (kpna1,LOC102776202)


Basic Information

Item Value
gene id AMCG00016462
gene name kpna1,LOC102776202
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20292302 ~ 20303074 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016462
GGGGCGCATGCGCAATAGCACACCGGCAACTGGACGCGGCCTGGGACAAGAGACGCAATTTGAGGAGATTGGAAACAGAGATTAGACACGACAGCAAGGTGTGAGGGGGGAGACGAGCGACCCTGAAATCGGACACTCAAAACTGCAATCCACACACGTGTGTCATtaacacaattacaatacagATACTCCCATCATGAGCTCAGGAAAGGACAACGTGCGTCTCAAGAGCTACAAGAACAAGTCTCTGAACCCAGaggagatgaggaggaggagggaggaggaagggcTGCAGCTCCGCAAACAGAAGAAAGACGAACAGGCAGGGATCATCTCAGAGGACATGATCCAGATGATCTTCTCCAGCGCTCCCGAGCAGCAGCTCATGGGCACACAGCGCTTCAGGAAGCTGCTGTCTAAAGAGCCCAACCCTCCCATTGATGAGGTGATTGCTTCGTCTGGTGTGGTGGAGAGGTTTGTGGAGTTCCTcaagaggagagagaactgCACCCTGCAGTTTGAAGCGGCGTGGGTGCTGACCAACATCGCATCCGGGACGTCCCACCAGACGAGGGTGGTGATCCAGGCAGGGGCCGTGCCGATCTTCATTGAGATGCTGGCCTCGGACTTTGAGGACGTGCAGGAGCAGGCTGTGTGGGCGCTTGGGAACATCGCAGGCGACAGCACAGTGTGCAGGGACTACGTGCTGGACTGCAACATCCTGCCATCTCTGCTGCAGTTACTGGCCAAGCAGAacaggctgatgatgatgaggaaCGCTGTGTGGGCGCTGTCCAACCTGTGCCGAGGCAAGAACCCACCTCCCGACTTCACCAAGGTGTCGCCCTGTCTCAGTGTGCTGTCCTGGCTCCTGTTTGTAAACGACACGGACGTGCTGGCAGATGCCTGCTGGGCCTTGTCGTACCTCTCTGATGGACCCAACGACAAGATCCAGGCCGTCATTGATGCAGGAGTTTGCAGGCAGCTGGTCGAACTTCTGATGCACAGTGATTACAAGGTGGTCTCCCCAGCACTCCGAGCAGTGGGCAACATCGTCACAGGAGATGATGTTCAGACTCAGgtCATTCTAAACTGCTCAGCCCTGCAGAGCCTGTTGCACTTGCTGAGCAGCCCCAAGGAGTCCATCAAAAAAGAGGCGTGCTGGACAATATCCAACATCACGGCGGGAAACAGGGCACAGATTCAGATGGTAATAGATGCCAACATACTGCCAGCTCTGATAAACATCCTCCAAGTGGCAGAGTTCAGGACAAGGAAGGAGGCCGCCTGGGCCATTACCAATGCCACGTCGGGGGGGTCTGCGGAACAGATACGGTACCTGGTGGAGATGGGCTGTGTGAAGCCACTGTGTGACCTGCTGACACTGATGGACCCGAAGGTCGTGCAGGTGGCTCTGAACGGGTTGGAGAACATCCTGCGGCTGGGGGAGCAGGAGGCTAAGCGGAGCGGCGGCATCAACCCATATTGCGCTCCCATCGAGGAGGCCTACGGCCTGGACAAGATCGAGTTCCTGCAGGGTCATGAGAACCAAGAGATCTACCAGAAGGCATTTGACCTGATCGAGCATTACTTCAACCCCGATGACGAGGATGCCAGCATCGCCCCCTCGGTggacctgcagcagcagcagtataTCTTCCAGCAGTGTGAGGCTCCCATGGAAGGCTTCCAGCTTTaatcctctctcctctcctgctctctctcctcctcaaGCAGTTGATCAGCAGCCTGCCTGGAGAGGACGTGGTAGCTCTGCCATGGCACAGAGAGGGCCTTCCTTTGTCCAGGAGGAATGTTTTGAAGGCAGTCAGTTGGCTCATCCCACACAGTCTGTCCTTTCCCCAGGATTATATcttcctttttaaatacatattattgtgattattttttataattaatcagACAATAGAACAGGCTCCAGCCTCCCCTATAGCACATGCACTGGACACCCTTCCCTCACGGACAGTGAACCGCCCTGATGGACCTGTGGACACTGAAGGATCGTGTCTGGTTGCCCAGCTTCAAGGATCACGGCACCCTTTCGCCCATGATGAAGTGCTGTCTGTCAGCGACTCAGTTTGATCTGGTTTGCAAggacaattttttatttatttttccaaaatcaCTTGAACTAAACACTGGATTGACTTTGCTATTTGTGAAGGGTCGATTTTTCAAGGATATTACTTTCAATTCAAGACTGACTATTGCCACTGACTGAGAAGCAAAACATAGTGTGTGGAGATCTACTCTCTGACAAACATCTCCTATGTCTACAATACATAAACTGAAAGTTACCAGAATGAATGCCCAGGCATTAATTACATTGATAAACTTAAGGAAACCCTGACAGAAATAGGAAAAGGaagtggctttttttttttttttttttttttttttttttttttgtccgtTCTCCTTTGTGGAATGTG

Function

symbol description
kpna1 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in NLS-bearing protein import into nucleus and postsynapse to nucleus signaling pathway. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Predicted to be active in nucleoplasm. Orthologous to human KPNA1 (karyopherin subunit alpha 1).

NR:

description
PREDICTED: importin subunit alpha-5

GO: NA

KEGG:

id description
K23940 KPNA1; importin subunit alpha-5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016462 True 2453 mRNA 0.52 13 20292302 20303074

Neighbor

gene id symbol gene type direction distance location
AMCG00016463 spcs2,LOC107677086 coding downstream 2517 20285322 ~ 20289785 (-)
AMCG00016455 ddx10 coding downstream 9985 20255636 ~ 20282317 (-)
AMCG00016454 NA coding downstream 146001 20145813 ~ 20146301 (-)
AMCG00016452 NA coding downstream 197377 20089569 ~ 20094925 (-)
AMCG00016447 NA coding downstream 209047 20082654 ~ 20083255 (-)
AMCG00016459 NA coding upstream 31814 20334888 ~ 20339043 (-)
AMCG00016461 eif2s3,if2g,LOC106590489,LOC107727229,LOC107686712 coding upstream 39006 20342080 ~ 20355124 (-)
AMCG00016464 NA coding upstream 54159 20357233 ~ 20362210 (-)
AMCG00016460 kif3a coding upstream 69480 20372554 ~ 20379132 (-)
AMCG00016473 sat1a.2,sat1,LOC107562204,LOC107591482,LOC107725150,LOC107654323 coding upstream 90523 20393597 ~ 20398749 (-)
G13615 NA non-coding downstream 287362 20003149 ~ 20004940 (-)
G13414 NA non-coding downstream 1033745 19258323 ~ 19258557 (-)
G13413 NA non-coding downstream 1035383 19256638 ~ 19256919 (-)
G13392 NA non-coding downstream 1038888 19165586 ~ 19253414 (-)
G13366 NA non-coding downstream 1203670 19088224 ~ 19088632 (-)
G13680 NA non-coding upstream 12668 20315742 ~ 20316579 (-)
G13762 NA non-coding upstream 165172 20468246 ~ 20513404 (-)
G13766 NA non-coding upstream 183807 20486881 ~ 20492021 (-)
G13789 NA non-coding upstream 292255 20595329 ~ 20598765 (-)
G13806 NA non-coding upstream 343762 20646836 ~ 20652268 (-)
AMCG00016453 NA other downstream 156755 20128908 ~ 20135547 (-)
G13367 NA other downstream 1186921 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 2750960 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 3025555 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 3422300 16866318 ~ 16870002 (-)
AMCG00016479 NA other upstream 313435 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 363068 20666142 ~ 20683024 (-)
G13962 NA other upstream 3152018 23455092 ~ 23455811 (-)
G13969 NA other upstream 3396075 23699149 ~ 23700255 (-)
AMCG00016504 NA other upstream 3537988 23841062 ~ 23862739 (-)

Expression


Co-expression Network