AMCG00016463 (spcs2,LOC107677086)


Basic Information

Item Value
gene id AMCG00016463
gene name spcs2,LOC107677086
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20285322 ~ 20289785 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016463
AAACAGCGAGGGTAGCCAATCACGACGCCCCAGGTCACTGTGAAAGAACAGGAAGAAAAGATGGCGGCGAAAAACGGGAAGAGTGGTCTCCTGGAAAAATGGAGGATCGATGAGAAGCCGGTGAAGATCGATAAATGGGATGGAGCTGCTGTGAAGAACTCTCTGGATGATGCTGCCAAGAAGGTACTTTTAGAGAAGTACGGCTACGTTGAGAACTTCAGCCTCATTGATGGGCGCCTCATCATCTGCACAGTGTCGTGCCTCTTTGCCATCGTGGCGCTGGTGTGGGACTATCTCCATCCGTTCCCTGAGTCGAAACCTGTTCTGGCATGCTGTGTTATATCttattttataatgatGGGTATTCTCACCCTGTACACCTCCTACAAGGAAAAAAGCATCTTCTTGGTTGCGGTTCAGAAAGACCCAACTGGCTTAGACCCTGACCGGATCTGGCAGCTCTCTTCAAGTCTCAAAAGGTTTGATGACCAGTACACTCTTAGAATGACCTTTATTGATGGAAAAAAGAAGCAGCAAAGGGAGCTGGAGTTTACAAAGTCGGTGGGGACATTCTTTGACGAAAATGGGACGTTGGTGATGGACCAGTATGAGAGAAACGTGTCTAAACTTCATGACAGTCTGGCGATGGAAAAGAAACTCAAATAAAGTTTTCCGAAACCCAGTACACACCAGCCTCATTATAACTCAACCCTGCAACATGAGAACCACAGAAGATGCTTCTGTTGTGTAGTCTCGATTGTGTTCAGGTTATCTACTGAACTGTTGTCATGGCTGTCTAATTGATGACAGACTcagtacttttgttttgtttttagttatcGACCACAACAATGTATAAATGCTCATTAGTCCATGAGCTGAATCCTAGCTTCATTGTCTTTAATGAGATTAATGAACAGGAGAGAAATTGGGAAGTAGACTTAAATTGCAAAACTCATAAATTTTGTGAACTTTATCTGCTTTGGGTTATTATAGGTTCCCCAGTGACATTTAAGGACAAACTATGTTCAGTTTAACTTATAGATGAAATACCTTCCTGTAATGGGTCTGTTCAGTAGCTTAGCATTATagattgtatttacatttgttttgccttgAAAGTTTAAATGGTGCTCCATTCTATTTAAGGGACAGTAGTGCTATTGGAGAACTTTCTGTGTAAAAGAATGCTAAATGATTTGTGTtactaacaaaaaaacacttaactGGACCGAATGGAATATCTGAAAACCTGGCAGAACATCATTGCCATTTCTGAAGCGTATACAATTCAAATTGAGAGAACACATCTTGAAtttgtggtcactgagccttaTAATGAGAATGGGGTGTATGacttgaattatgtttttttttttttgcttgcattttttttttttttttgttatgttcttgacagtgttttgtccTGAAAGCCTTactcagtttaatttttttttttaaatatatatataaaccatgcTCTACCACCTTATAGTCCTATGAATGTCATATTATGACTACAGGTTTTCTAAATGGGCTTTAAGGACAAAGTATAAATCTCAAAAAGGGACTGTATCCTGATCCATTGCCTCCTTTATGCACATTATAATGGTTAGCGTGTATGTAAAGGATGGACCACAGGTTTTCATGATCTGATCTGTATGTATTGGGTAGTGatggattcaaataaataaactgaaatttaaatgcTGAGCATACACTATGCATTGCAATGTAGATTAacagtttcatatttaaaacaaacattcgTGCAGACTGTGACGGTTTTTGCTGCATAATAAATAACCTTAtctttcacaaaatataaatacatagttgtaatagctttttctttttgttcaacATCTGTATATCCAACATGTAGAATTCAGAATACGTAATAGGTCAATGATGTGTGAGGATGCAGTTTCTTTTTGCTAACTTTTTGTcccagcaacacacacacaactcacctttttatatatttatttccagtgAATTCTATTGAACCCCTATCGGTTTGATGGTTGTATACTGATCTTTTGCTTTAGCTTCCTGTTATGTACTTCACAGGcgatgtataaataaaaagacaatggcatttttata

Function

symbol description
spcs2 Predicted to enable peptidase activity. Predicted to be involved in protein targeting to ER and signal peptide processing. Predicted to act upstream of or within proteolysis. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of signal peptidase complex. Orthologous to human SPCS2 (signal peptidase complex subunit 2).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF169-like isoform X3

GO:

id name namespace
GO:0006465 signal peptide processing biological_process
GO:0006508 proteolysis biological_process
GO:0005787 signal peptidase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K12947 SPCS2, SPC2; signal peptidase complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016463 True 2112 mRNA 0.38 5 20285322 20289785

Neighbor

gene id symbol gene type direction distance location
AMCG00016455 ddx10 coding downstream 3005 20255636 ~ 20282317 (-)
AMCG00016454 NA coding downstream 139021 20145813 ~ 20146301 (-)
AMCG00016452 NA coding downstream 190397 20089569 ~ 20094925 (-)
AMCG00016447 NA coding downstream 202067 20082654 ~ 20083255 (-)
AMCG00016446 NA coding downstream 202730 20071748 ~ 20082592 (-)
AMCG00016462 kpna1,LOC102776202 coding upstream 2517 20292302 ~ 20303074 (-)
AMCG00016459 NA coding upstream 45103 20334888 ~ 20339043 (-)
AMCG00016461 eif2s3,if2g,LOC106590489,LOC107727229,LOC107686712 coding upstream 52295 20342080 ~ 20355124 (-)
AMCG00016464 NA coding upstream 67448 20357233 ~ 20362210 (-)
AMCG00016460 kif3a coding upstream 82769 20372554 ~ 20379132 (-)
G13615 NA non-coding downstream 280382 20003149 ~ 20004940 (-)
G13414 NA non-coding downstream 1026765 19258323 ~ 19258557 (-)
G13413 NA non-coding downstream 1028403 19256638 ~ 19256919 (-)
G13392 NA non-coding downstream 1031908 19165586 ~ 19253414 (-)
G13366 NA non-coding downstream 1196690 19088224 ~ 19088632 (-)
G13680 NA non-coding upstream 25957 20315742 ~ 20316579 (-)
G13762 NA non-coding upstream 178461 20468246 ~ 20513404 (-)
G13766 NA non-coding upstream 197096 20486881 ~ 20492021 (-)
G13789 NA non-coding upstream 305544 20595329 ~ 20598765 (-)
G13806 NA non-coding upstream 357051 20646836 ~ 20652268 (-)
AMCG00016453 NA other downstream 149775 20128908 ~ 20135547 (-)
G13367 NA other downstream 1179941 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 2743980 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 3018575 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 3415320 16866318 ~ 16870002 (-)
AMCG00016479 NA other upstream 326724 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 376357 20666142 ~ 20683024 (-)
G13962 NA other upstream 3165307 23455092 ~ 23455811 (-)
G13969 NA other upstream 3409364 23699149 ~ 23700255 (-)
AMCG00016504 NA other upstream 3551277 23841062 ~ 23862739 (-)

Expression


Co-expression Network