AMCG00016465


Basic Information

Item Value
gene id AMCG00016465
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20435767 ~ 20440084 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016465
ATGTCTGTATTTAATAGGGACGACAGCAGATGCAGCGAGCCGCTGAAGACCCACATTCAGAACTCGCGGGAGCTGCTGGTGGAGTCCATGTACAACATCGCGCCACTGCTGGACCACATGATTGCCACGCACCTCCTGACCGAGGACAACTACTACGACGTGATCGCCGAGAACACACCCAAGAACAAGGTCCGCAAGCTGCTGGAGGTGGTGCAGCACCAGATGGATGAGGACAAGGCCCTGCACTTCCTAGATTGCCTGAAGAAATGCCGGAAGGACTATCCCCGATTGCGAGACTGGCTCAACACTGATCCCAAACAGAGACTGCGGGCGCAGTTCAGTGAGCTTTGCAGCCGTTTGGGCTACCTGGTCCTACCCTTGTCCCTGCAGCTGTTCTCGGGAGAGGTGCTGTCGCAGTTCGAGGTGGACCAGGTGCAGGCCTGTCCCACCCCCTTCCTGCAGAGCCAAAAGCTCCTGAGCCTGTGCCTGGCGCGGGGGGAGGCTGCCTGCCAACGATTCTACCAGGCCCTGCACTCCCAGGACAGCTTCCTGGCTACGGCCATTGACGACGCTTCAGTGGTAACCAGATGTTCAGTAGCTGTAGAGGAAACAAACCCCCTTGGAGACCATGTCCTCCGACAGGTGATTGAGCAGCTGGGCGTGGCGCCGGACTCTAGGATGACTCTGAACGTGTGTGAGCTGGGCACGGTGCTGGGCCTGCCACGCCAGGTGGTCCGGGAGTGTCTGCTGGAGCTGGAGAGCATTGAGGACCTGCCACAGCTGGCTGCCCTGGTGCACTGCTTCCTGGAGAAAACGCGGGACCCCGCCCGGCTCCTGAGCAAGCTGGCCGCCTGCCACACCAAGAGCCTGATGCTGTCTGAGAGGGGCACACTAGTGCTGGAGTTGCTGCAGGAAGCCGCAGCCCTTCTTGGCAGTGGCCAGAAGGAGGAGATTCAGAAGTGCTGGAACATCTTCAGCTTCCTGCTGTGGGACTGCCTGGCCAAGGTGGAGGAGGACCCCACGGCAGCGCCCTGGCCGGGGCATCTGGGTGCTGTGCAGCAGCTAAGGGAGAGTGGGCGGGTGGACCCGGCCCTggcacaggagctgcaggagtGCTGGACAGATGGGATGGCAGAGAGCCTCCTGCAGAGCCTGCGTGTCCTGGCTCAACTGCTGAAGGACATGCACCCCCATCTGGACGCTGCGAAATTCACCCTTCAGCTGCAGGGCGAGGTGTACCACTGCAGGCCGCGCTTCCTGAACAGGGTCACGCGCTTCGTTGGCCTGTCCACCCGAACCATCTACAGGGTGCTGCCACGTAACGGACCCCAGTGTCTGAAGATGGACCCGGACTCGTTGCTTGACAGAGCCGCAGTGGCCGCTCAGTATGAAGCCATTTGCCTCCAAATGGCTCGCCTGCTGGCCAGGGTGGCTCCACAGGGGCACAGCAGCGCCCTGACGCAGGCGGCTGGACTCTCGGAAGCACTGCAGGAGATCCAGTCGACCCTTTCCCAGCCGAAGTTCGGGTCGGACGCCTTCGATACTGGTGTCAAACACTGCATCCTGTCCGTGGCCCAGTTCGACCCCGTGACAGCGGGCGTGCACTCGCTGGTAAACCTGCACAGCCACACGCTGCAGCTCCTGGGGGAGTACCTGAGGAGCAGCGACAGGCACTCCTTCCAGTTTGTCCCGGAGGCCGTGCGGATGGTGAGCAGCAGGGCGGAGCTGCGAGGCGTTCGCAGTGAGAGGGGCCCTGTGGCCATGGACGGCGGGGTGGAGGAAGTCTTTCGGTTCTCAATGTCGGAGCCGGCCTCCTTCCTGCTGTGGTTGTCCTGCCATGGCTACAGAGACCAGGAGTACTTCCAGAGCAGCCAGCCGCGCTCGTTCCACATCTCGGGCCTGTCGGACTCCGCCCTGGATGAGTTGGAGAGCCAAGGAGCTGTGGTGCTGGCTGTTGACCGGGGGCACGTGTGGCTCAGGGAGGGGAGCCAGGATGGGCTGGGCAGCAGGTTGCAGGCTTTCGCAGAGCGGCACAATGCCGTGCTGGAGGAAGGCAGCTGCTGTGTCCTCATTACCACCACCGGGGAGGAGTGTGAAGTCAAGGTCACGTTCAAGCATGGAAAGATCTCGGCCACAACAGAGAACTGCAGTGTCCTGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016465 True 2160 mRNA 0.62 6 20435767 20440084

Neighbor

gene id symbol gene type direction distance location
AMCG00016466 pdha1a,LOC107599948,LOC107726384,LOC107672749,LOC107592287 coding upstream 1556 20426493 ~ 20434211 (+)
AMCG00016467 NA coding upstream 15949 20408303 ~ 20419818 (+)
AMCG00016469 NA coding upstream 43278 20380613 ~ 20392489 (+)
AMCG00016456 klhl15,LOC107727232 coding upstream 82261 20350648 ~ 20353506 (+)
AMCG00016458 NA coding upstream 103992 20328705 ~ 20331775 (+)
AMCG00016468 NA coding downstream 8266 20448350 ~ 20466290 (+)
AMCG00016475 casr coding downstream 37971 20478055 ~ 20482996 (+)
AMCG00016474 NA coding downstream 59214 20499298 ~ 20502189 (+)
AMCG00016478 NA coding downstream 141862 20581946 ~ 20594925 (+)
AMCG00016482 NA coding downstream 432309 20872393 ~ 20876476 (+)
G13700 prdx4,LOC107734341,LOC107665442,LOC107654298,LOC105904605 non-coding upstream 9925 20424137 ~ 20425842 (+)
G13685 NA non-coding upstream 32261 20393511 ~ 20403506 (+)
G13682 eif2s3,LOC107727229,LOC107686712,LOC107741782 non-coding upstream 90695 20342074 ~ 20345072 (+)
G13681 NA non-coding upstream 116428 20319017 ~ 20319339 (+)
G13662 spcs2,LOC107677086 non-coding upstream 145933 20287075 ~ 20289834 (+)
G13791 NA non-coding downstream 174661 20614745 ~ 20617697 (+)
G13798 NA non-coding downstream 206751 20646835 ~ 20652272 (+)
G13799 NA non-coding downstream 213586 20653670 ~ 20655615 (+)
G13873 NA non-coding downstream 1482069 21922153 ~ 21922461 (+)
G13892 NA non-coding downstream 1796087 22236171 ~ 22236399 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 556042 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 1962078 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 2836186 17562418 ~ 17599581 (+)
G13012 NA other upstream 3313835 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 3949764 16484355 ~ 16486003 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 1342022 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 3426183 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 3497967 23938051 ~ 23945024 (+)
G14057 NA other downstream 3639933 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 4039622 24479706 ~ 24561807 (+)

Expression


Co-expression Network