AMCG00016467


Basic Information

Item Value
gene id AMCG00016467
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20408303 ~ 20419818 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016467
CGCTGCCACTCGAGGCATTACGGTACGTACGTCGTGGGTTACGTACGTCCACCCGGAAGTGTCTTGCCAGCGTTGCCTGTCAACTTGAAGTGTGTAGAGGTTGTGTAGGTAATAATTACCTAAAGATGCTGTCTCTGAGATTACGGTTGCTGAGCGCTGCCTCCTCCCTGACAACCAGGGCTCTGTCATCAGGGCCTTCAGCTTCCCAGGGCAAGTCTCCTGACATGAAAGAAgGACATTCACACTTGCTTCTGACTGATGTCAGGAATAGACTGAGAGAGATAGTGGGAGCTTCAACGAACTGGAGTGACCACAGGAAGGCAATGCAGGAGCGGGCGTCTCTGAGCTCCCAGCTGGCCAGCAGTCAGGAGGACCTGCCTGTGCGGACCATGAAGGACAGCCTGATCGAAGTGCTGCTGCCGCTGGGGAGCCAACCCACGCTGCGTGAGAAATACCTCACCATGCACAACAGCGTCAGGTTTGGCCGAATCCTTGAAGATCTTGATAGTTTAGCAGttcTTATTTGTTACACCCACACCAAAACGGACACTCTTGGGAGATCTCCGCTGTCTATAGTCACCGCCTTGGTGGATAAAATTGacaTGAGGAAGAACATTATTTACCCAGACTGCGACATCAAGTTTACAGGGCATGTGACCTGGGTGGGCAAAACCTCGATAGAAGCCAAGATGCATGTGACCCAGCTCCATGATGGTGCCTTTAGTCCAGTCTTAGACGCCACATTCGTGATGGTGGCCCGGGACCCGGAGAATAAGCGGGCTGCCTTTGTCAACCCACTGAAGCCTGAGGGACCAGAGGAGGAGCGTCTCTTTCAGCAAGGAGAAATAAACAAGACCAGGAGGGTGGAGCTGAGCACGGCCTCGCTGCTGAAGGTGGCCCCCACGGCCGAGGAGAGGAAGATTGTGCACAGCCAGTTCCTCAGCACGCTGGACTCCAAGACGGTCAGTTTCCGCAGCCGAGTGCTACCTCCCAACtcggtgtggatggaggacgcCAAGCTGAAGGGGCTGGAGATCTGTCACCCACAGGAGCGCAACATTTTCAACAGGATATTCGGAGGTGGGTCTAGGCCATACCTGGTTGCAGTGGATGACATCCTGTTCCAGAAGCCAGTGGAGGTGGGATCCTTACTGCTGCTCTCCTCACAGGTGTGCTACACAGAGGAAACGTACATCCAGGTCAGAGTTCACACAGAGGTGTTTGACGCTATGACCCGGCAGCACAACACCACCAATGTATTCCACTTCACGTTCTGCTCCCAGGAGGAGGTCCCACAAGTTGTCCCCAAAAGCTACGGAGAATCCATGCTGTATTTGGATGGGAAGAGGCACTTTGATCTGACCATGAAGGGAGGCACAGTAgcctgagggagggagagctgACAGAAGAGCAACACACCAAAGCCTTTACTCTGCCCATCGCCCTGCTACCCTGCCTGTGGGGGCAGAAGGGCTTCCATTTTCAGCCAATGTTTCAGAATCTATGTTATGCTTGATAGCTCTGCTGCCCTGCCAGTGGTGAAGGGCCATATTCACATGAGCTTTGAGGAGGGGATTAGTGGAGATACTGCAGACTCCATGCTGGGATTCACTGACACTACCTTTACAACAGGAAAACACGGGTCCTTATTATACTGGATTATGTACTTTCTCTGTCCATGAATGGGGAAGGGCAAAGCCCTCTATTTCACCATGGTGTCACCAAGGGGCAAGCCAGGCTTGAAGATCTTCAGGCACCGGTTTGTGATTTCAGGTTTAAATgaccaaacaaaacacacatgggtaaattaaaaaaaaaaaaaaaacacagccacAACACTGCCCCTTGAAATTCCAAGACTGTACACTCCAAGCACTTACCATATAGTCACACTCTTTATATTGctcaaaatattatataatagtaCTTATGAACACCATCCACATTTGCCTTTTGGATTATGATGGCTGAATCTTTCATGTTAtcaattgtatttcaaaaactgACTAAATAAATCAAGTTGTATCCGCTGGGAGATAAGTCTAAAGTCACATTCTTACAAGTCACAGTAACAAATGTCATTATATAAT

Function

GO: NA

KEGG:

id description
K17361 ACOT9; acyl-coenzyme A thioesterase 9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016467 True 2090 mRNA 0.50 16 20408303 20419818

Neighbor

gene id symbol gene type direction distance location
AMCG00016469 NA coding upstream 15814 20380613 ~ 20392489 (+)
AMCG00016456 klhl15,LOC107727232 coding upstream 54797 20350648 ~ 20353506 (+)
AMCG00016458 NA coding upstream 76528 20328705 ~ 20331775 (+)
AMCG00016457 NA coding upstream 91549 20308979 ~ 20316754 (+)
AMCG00016448 abcg1,LOC108426925,LOC107684024,LOC107561305,LOC107677096,LOC107755138,LOC106612441 coding upstream 282019 20104916 ~ 20126284 (+)
AMCG00016466 pdha1a,LOC107599948,LOC107726384,LOC107672749,LOC107592287 coding downstream 6675 20426493 ~ 20434211 (+)
AMCG00016465 NA coding downstream 15949 20435767 ~ 20440084 (+)
AMCG00016468 NA coding downstream 28532 20448350 ~ 20466290 (+)
AMCG00016475 casr coding downstream 58237 20478055 ~ 20482996 (+)
AMCG00016474 NA coding downstream 79480 20499298 ~ 20502189 (+)
G13685 NA non-coding upstream 4797 20393511 ~ 20403506 (+)
G13682 eif2s3,LOC107727229,LOC107686712,LOC107741782 non-coding upstream 63231 20342074 ~ 20345072 (+)
G13681 NA non-coding upstream 88964 20319017 ~ 20319339 (+)
G13662 spcs2,LOC107677086 non-coding upstream 118469 20287075 ~ 20289834 (+)
G13659 NA non-coding upstream 152283 20219443 ~ 20256020 (+)
G13700 prdx4,LOC107734341,LOC107665442,LOC107654298,LOC105904605 non-coding downstream 4319 20424137 ~ 20425842 (+)
G13791 NA non-coding downstream 194927 20614745 ~ 20617697 (+)
G13798 NA non-coding downstream 227017 20646835 ~ 20652272 (+)
G13799 NA non-coding downstream 233852 20653670 ~ 20655615 (+)
G13873 NA non-coding downstream 1502335 21922153 ~ 21922461 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 528578 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 1934614 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 2808722 17562418 ~ 17599581 (+)
G13012 NA other upstream 3286371 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 3922300 16484355 ~ 16486003 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 1362288 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 3446449 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 3518233 23938051 ~ 23945024 (+)
G14057 NA other downstream 3660199 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 4059888 24479706 ~ 24561807 (+)

Expression


Co-expression Network