AMCG00016468


Basic Information

Item Value
gene id AMCG00016468
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20448350 ~ 20466290 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016468
ATGGACCAGCGGCGCCGGGGGGCAATCCAGGGGCTGCCTGGCACCTGGTTGCTGGCTCTGGCTCTTCTACAGGGATGCCGGGCTCTTCAAAATCACCACCGACCCGCAGTCGCCAAAGGAGCGGATTTTAATCGGCTCTACACTGGCTTTGTGACGAGGGGAGTGGAGGAGATCTACACGTTCAACTACAGCACGAAACCTGGGGAGGTGGATGCAGTGCGGGTGTACGTCAGCAGCAGCTCTGAGGACCTGCGCTACCCGGTGGTGTTTGTAGTCCGGCAGCAGAAGGCCGTGCTGTCCTGGCAGGTCCCCCTGGTCCTCCGCGGCCTTTACCAGAGGATGTACACCTACCAGGAAGTGAGCCGTACGCTTTGTCCCCTGGAGCCGCTATCAGAGGAAGTGACTTCAGAGCAGTTCCTGTTTGTCGATGTAGCGTCCATGGCTCCATTCAACGTGCACTATGAGCTGCTGGTGACACGGGTCAGCCACTTCACGCTGGAGACTGGAGTGATGTTTAATTTCAGTGCTACACCCTCTCAGCCCAGGTATTTCCTGTATGAGTTTCCAGTCGACATGGACTCCGTGGTTATTGAGGTGATGTCTCTGCGGGGGCAGCCCTGTGCGGTGGTTTCTGTACAGGACATTGTGtgcccaGTGTATGACCTGGATTACAACGTGGAGTTCATCGGGGTGTACCAGTCCATGACAGTGAAAGCTGCCATTACTGTCCAGAGGAAGGATTTTCCCGGGGGCAAGTTCTACGTGGTGTTTGTCATCAAGCCTGAGGACTATACCTGTGGAGGCTCCTTCCCCTCCATGAAAGGCAAAGGGAACCACACCTGGAACCAGGAGCGAATCAAGGACCTCAGCGTCACCATCGTGCCATCCATCACCAAGAGGGTGTACATCAAGGCACTGCTCTTCTCCTTCATCATCTTCCTGTTGTTCTACGCGGGCGCTCTGATTGTGGCCTTTGTTCACTACATGAGGATTCAGAGGAAGGGCTTGGGAGGAGTGTACAGTCCTGATGATGAAGGAGAGGGCACAGTGGCGGCATCCCATCCCATTGCGAGTGGGGCCTCTGAGGGAGGGAGCTACGGTGCCATTGGTGAGTCCTTAAATCAACCAAACCCCCCCATACCTGCACTCTCAGCAGTCAGCAAGAAGTACAAGATCTACTTCTGGAACATCACCACCATCGCAGTGTTCTACACCCTCCCAGTCATCCAGCTAGTCATCACCTACCAGACGGTGGTGAATGTCACAGGCAATCAGGACATCTGCTACTACAATTTCCTGTGTGCGCACCCTCTGGGTGTATTGAGTTCCTTCAACAACATCCTGAGCAATGTGGGCTACGTACTGCTGGGCTTCCTGTTCCTGCTGATCGTGCTGCGCAGAGACCTCCTCCACCAAAGGGCACTGGAGGCCCGGGATGTCTTCGCCATGGAGTATGGTATCCCCAAACACTTTGGCCTGTTCTACGCCATGGCCGTCGCGCTGATGATGGAGGGGGTGCTCAGTGCCTGCTACCACGTCTGTCCGAACTACTCCAACTTCCAGTTCGTCATCTTCCTGGCTGTGCTGGGGGTGATTTTTGGGAAGAATGCCACATGGTTTTGGATCCTGTTCTCCGTCATTCATGTCCTGGCATCGCTGGCTCTGAGTACCCAGATCTATTACATGGGGAGGTTCAAGATAGATATGAACATTTTCAGACGCATCGGGATGGTCCTATACAATGACTGTGTTCAGCAGTGCAACAGGCCAATGTACATGGACAGGATGGTTCTTCTAATCCTTGGCAATCTGGTAAACTGGTCTTTCGCTATCTGTGGGCTTATCTTAAAGCCCAGGGACTTTGCCTCCTACCTCCTTGGGATTTTCATCTGTAACCTGCTGCTTTACCTGGCCTTCTACATCATCATGAAGCTCCGGAGCTCTGAGAGTCTGCAGCCCATCCCATTGTTCTGTATCATTGCCACGGCGATCATGTGGGGGGCGGCCCTTTACTTCTTCTTCCAGAATCTGACCAGCTGGGAGGAGTCGCCTGCACAGTCGCGAGAGCAGAACCATCCCTGCACGCTGCTCAGCTTCTTCGATGACCATGACATCTGGCACTTCCTGTCTGCTTCTGCCATGTTCTTCTCGCTCCTGGTTCTCCTGACACTGGATGATGACCTGGACCATGTCAGGCGAGACAAGATCCCAGTATTTTAG

Function

GO:      GO:0044765

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016468 True 2220 mRNA 0.54 24 20448350 20466290

Neighbor

gene id symbol gene type direction distance location
AMCG00016465 NA coding upstream 8266 20435767 ~ 20440084 (+)
AMCG00016466 pdha1a,LOC107599948,LOC107726384,LOC107672749,LOC107592287 coding upstream 14139 20426493 ~ 20434211 (+)
AMCG00016467 NA coding upstream 28532 20408303 ~ 20419818 (+)
AMCG00016469 NA coding upstream 55861 20380613 ~ 20392489 (+)
AMCG00016456 klhl15,LOC107727232 coding upstream 94844 20350648 ~ 20353506 (+)
AMCG00016475 casr coding downstream 11765 20478055 ~ 20482996 (+)
AMCG00016474 NA coding downstream 33008 20499298 ~ 20502189 (+)
AMCG00016478 NA coding downstream 115656 20581946 ~ 20594925 (+)
AMCG00016482 NA coding downstream 406103 20872393 ~ 20876476 (+)
AMCG00016489 arrb1,LOC108440366,LOC108277835 coding downstream 1395498 21861788 ~ 21904114 (+)
G13700 prdx4,LOC107734341,LOC107665442,LOC107654298,LOC105904605 non-coding upstream 22508 20424137 ~ 20425842 (+)
G13685 NA non-coding upstream 44844 20393511 ~ 20403506 (+)
G13682 eif2s3,LOC107727229,LOC107686712,LOC107741782 non-coding upstream 103278 20342074 ~ 20345072 (+)
G13681 NA non-coding upstream 129011 20319017 ~ 20319339 (+)
G13662 spcs2,LOC107677086 non-coding upstream 158516 20287075 ~ 20289834 (+)
G13791 NA non-coding downstream 148455 20614745 ~ 20617697 (+)
G13798 NA non-coding downstream 180545 20646835 ~ 20652272 (+)
G13799 NA non-coding downstream 187380 20653670 ~ 20655615 (+)
G13873 NA non-coding downstream 1455863 21922153 ~ 21922461 (+)
G13892 NA non-coding downstream 1769881 22236171 ~ 22236399 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 568625 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 1974661 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 2848769 17562418 ~ 17599581 (+)
G13012 NA other upstream 3326418 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 3962347 16484355 ~ 16486003 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 1315816 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 3399977 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 3471761 23938051 ~ 23945024 (+)
G14057 NA other downstream 3613727 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 4013416 24479706 ~ 24561807 (+)

Expression


Co-expression Network