AMCG00016471


Basic Information

Item Value
gene id AMCG00016471
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20441545 ~ 20447031 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016471
ATGTCGTTCGTCAGAGTGAACCGCTCCTACCAGCCGCACGGCCTGGGAAAGAGGACGGGGAGGGCCAGGAAAAAGACATCGGCGAGACAGGAATGGGTGAGCACCGTGCATGACCTCAGCGTGCATCGGGCGACTCCTGAAGAACTGAACCGGCGCCATGAGATGCACAGGTCCAAGAACAGAGCGGCGGCGCAATGGGAGCTCAGGGAGCGGGCCCTCAGGAGGAAACTGAGGAGGCAGGGCCCGGCTAGCCCAGACCCGCTGGACAGAGCCAAACTGGCCATCATGAGGGAGGTGCTGGCGGACCAGTATCAGATGCAGGAGGTGCTGGAGAGGTCCGACCGGGCCATGGCTGTGGTGAAGGATTTATTTGGTGATGCACCCCGCAGAAAAACAGGCTTCCCCAATGTGACTGTGgcccctgactgtgacctgGAGACCTCAGTGCTGCCGGTACTGCAGAGGCCAGAGCCACCCACACAGCTGTCCATCCTCAGCCAGTCGGTATTGAACTCCCAGgCTCTGAATGAGCTGGGAGAAGACAGCCTGAGCGACGGCGAGCCGGAGGACAGCAAGGAGGCCAGGAGCCCATCTGTGTCTGCCATCTCCAACATGGACATGGGCAGGTATAGCCAGTATCTGCAGGAGGAAGATCCACCAACCCAGGACAGGAGGCCTGCAGATAAGCAGCAAAGCCGATTACACCCCTCCACAGCGCCTGACACTGCCGTGACTCCTCGCACCCCCCACAACGCAGCCCTGTCCTCGGGGGTGCAGGCAGtcagtgtgaccCTTGTCTCGGTGTGCTCTTCCCTGCCCTGTACAGCAGCACTGAATGCCACAGCCAAGGTACGGAGAGTGAGGCCCCAGCGGCAGGGCACAGAGCAGAGCCCAGCCTCCCCATCACGCCTCTCCACCCTTGTCACCCACGTCCTCAACCCGGACGCGCCAAGGCCCAGGACAGgGAGGAAGAGCCAGTCCTCGCGTTCCCTTAGGAGGCGCTGTGAGCAGCCGCCCGTCCTGGACAGCTCGGCCCTCACCTCTCTGAGTGGGAACCAGTCTAGCCTGGAGCTGCTGCAAGACATGCTGGGAGAAGTGGAGCAGGAGCTGGACTCCCTAGATCTCCACGGATCCCAAGAGCTGCCCCCCACCGCAGAGCGCCCACACCGAGCACCGGGACTTACCGGCTTCTCTGTGTCCCTGGTGTCCACCCTCCGCAGGCTGGCCCAGCACCTCAGACAGAGCGAGGGCGTGCTGCAGCAAGAAACTGTCGAGAGGAGGCGACTGGAGGATGAGACACAGGAGCAGCGCAGACTGATCGACGCCCTGACCGCCGAGATGCTCGCCCTGCGGGAGGAGAGTGCAGCCAtgcagGcccagctgcagcagcacacGGCCATGACCGAGCACCAGCTGAGCTCCCTGAGGCAGGAGCTGAGAGCCCTGGGGGGCAAGAGTGACGTTGCAGAGCCGCAGCCTAACCCTGCCCCCACTGGCGCACCCCTAGCTGCGGGGAGTGCTGCTTCAGACGGGGTGTTGCTTGTGGAGACGATGCCCTGTCCTGACCGAGAGAGTGTGGAGCAGCAACCCCCCAGCAGGGCCCTGCCCCCGCACCTGTTCCACTCCGCCGTGCTGCTGTCCCCCCCCCGCCAGAGAGACAGCCAGCCCCCCCGCACAGCACCCTCAGTTGTGAGGAACGTCTTTGTGGAAAGTCAGGATCCAAACCACAGGGAACAGGGTGTTGACAGGGAGCGGTCGGGGCCGGGCTGGGAGGCGGCCTGCCAGTCCACCCAGGATGAGCTGGAGGAGCTTAGTGTGGCCTCGTCCTTTGCCAGCCTCCCCCGCTCGGGCCTACTGCCCACAGCTGGCTTCCGTGTGGCTGAGCCGCCCACCACCATGTGGAAGCAGGGGACAGAGGCGGCAGCCAGCAGGAAACAAGAGCGCCCCCAGCTCTCGCAGACACAGGACTCGCTGCTCAGCCACATCGCGGAGCTCAGCCTGCAGAACTCCCTCATCAGGGCACAGCTGGGGCAGATTCGAGCCCAGCCAGGGGAGGCTGTGGTGACCCAGGAGCACAGGAGTCCAGTAACGGGGCCAACTGCCACAGCGAAAGGAGTGCCTTCCTCTGGGACAGAGCAGCAGGTGGCGCTCCCTCTGCCCTCCCTGTCCAGCGTGGAGCAGCGCATCGCCGAGCTGAACCGGCAGAGCGCAGAGGCGCGTGGCAGACTGCTGGAGCTGATTGAGCAGCAGCGGCAGGTGTCCTCTGTCTCCCCCAGCATCTCCCCCATCCCGACTCACGAACCCCACAAAGCAGGTAATGGAGGAAGGATGCTAGAGGTGTCCATCCCACAGCCTGACATGGACTCCTCCACTGGGACGACCCCTTCCTCTGTGGGCCGTAGCTGTGGGAGAAGGTCTGCAGGCTCTGGGACTGGCAGCAGGACTGGTTCCCCTCTGAGCACCAGTATGGGAGAGGGCAGGACAGTGTCTAGCCAGCACAGGGCACAGGTGAGCAGGAGTTAG

Function

GO: NA

KEGG:

id description
K16490 SPICE1; spindle and centriole-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016471 True 2523 mRNA 0.64 15 20441545 20447031

Neighbor

gene id symbol gene type direction distance location
AMCG00016470 prdx4,prdx2 coding downstream 15795 20421954 ~ 20425750 (-)
AMCG00016472 sat1a.1,sat1,LOC107654323,LOC107734365,LOC107665519,LOC107591481,LOC107725087 coding downstream 35769 20401388 ~ 20405776 (-)
AMCG00016473 sat1a.2,sat1,LOC107562204,LOC107591482,LOC107725150,LOC107654323 coding downstream 42796 20393597 ~ 20398749 (-)
AMCG00016460 kif3a coding downstream 62413 20372554 ~ 20379132 (-)
AMCG00016464 NA coding downstream 79335 20357233 ~ 20362210 (-)
AMCG00016477 NA coding upstream 59817 20506848 ~ 20510468 (-)
AMCG00016476 NA coding upstream 70768 20517799 ~ 20523757 (-)
AMCG00016481 NA coding upstream 476949 20923980 ~ 20973210 (-)
AMCG00016483 NA coding upstream 539961 20986992 ~ 21012361 (-)
AMCG00016484 NA coding upstream 627063 21074094 ~ 21245418 (-)
G13680 NA non-coding downstream 124966 20315742 ~ 20316579 (-)
G13615 NA non-coding downstream 436605 20003149 ~ 20004940 (-)
G13414 NA non-coding downstream 1182988 19258323 ~ 19258557 (-)
G13413 NA non-coding downstream 1184626 19256638 ~ 19256919 (-)
G13392 NA non-coding downstream 1188131 19165586 ~ 19253414 (-)
G13762 NA non-coding upstream 21215 20468246 ~ 20513404 (-)
G13766 NA non-coding upstream 39850 20486881 ~ 20492021 (-)
G13789 NA non-coding upstream 148298 20595329 ~ 20598765 (-)
G13806 NA non-coding upstream 199805 20646836 ~ 20652268 (-)
G13812 NA non-coding upstream 314392 20761423 ~ 20761693 (-)
AMCG00016453 NA other downstream 305998 20128908 ~ 20135547 (-)
G13367 NA other downstream 1336164 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 2900203 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 3174798 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 3571543 16866318 ~ 16870002 (-)
AMCG00016479 NA other upstream 169478 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 219111 20666142 ~ 20683024 (-)
G13962 NA other upstream 3008061 23455092 ~ 23455811 (-)
G13969 NA other upstream 3252118 23699149 ~ 23700255 (-)
AMCG00016504 NA other upstream 3394031 23841062 ~ 23862739 (-)

Expression


Co-expression Network