AMCG00016474


Basic Information

Item Value
gene id AMCG00016474
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20499298 ~ 20502189 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016474
ATGGGCTTGTGCCCTACTTTCTGTAATCTCTCTCGCAAGGTCAAGTTTTTGATTGTGCTGCTGCTCTGTGTGACTCTGCTGACCTGGATCACCACTCTAAACAACTTCAGCGACATTGTCCGCGATGCGCATGAATTGCCGAAACTCCGGGATAGGCAACAGGAGGCACATGATGTCATCAAGGGGGGAATCGGGACCTCTGAGGGGGCCAGGCCAAAGGCAATCCAGCTGGCTCCCTTCTCTCCATCCCCGACCCCTCTGCAGCCCTGTCCACAACAATCCCCACTGCTCCGGGGAGCATTGGCGCTGTCGTTCAAACCCTCTCTGACGCTGGCCGAGGTGGAGCAGGAGAACAGGCAGGTGTCGGAGGGGCAGTACCGGCCGCTGGGCTGCGAGGCTCGGCAGAGCGTGGCCGTCCTCATCCCCCACCGCAACCGCGAGAAGCACCTGCTCTACCTGCTGCACCACCTGCACCCCTTCCTGCAGAGGCAGCAGCTCCACTACGCCATCTACGTCATCCACCAGGCGGGGAATGTGACCTTTAACCGAGCCAAGCTGCTGAATGTGGGTTACCTGGAGGCCCTGAAGGACTATGACTGGCAGTGCTTCATCTTCCATGATGTGGACCTGGTCCCGGAGAATGACCGCAACCTGTACCGGTGTGACAGCCAGCCCAGGCACCTGGTGGTGGGGAGGAATGCCACAGGGTACAGGTTGCGCTACAAAGGCTATTTTGGAGGGGTGACGGCCATGAGCAAGGAACAGTTCTTCAGAGTGAACGGTTTCTCGAACACGTACTGGGGCTGGGGAGGCGAGGACGACGACCTGCGCATCCGGGTTGAGCTGCAGAAGTTTAAGATTGTGCGACCGCCTCCTGAAGTGGCGCGCTACACCATGATCTTCCACACCAGGGACAACGGCAACGAAGTGAACAAAGACCGCATGCGTCTGCTGAGCCGTACGCCACGCGTCTGGAAGAGGGACGGCCTGAGCTCCTGCCTGTACAAGACGCTGACAGTGGAGAGGCCAGCCCTGTACATCAACATCACCGTGGACCTCGGCCGCCCGCAGCACTAG

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K07969 B4GALT4; beta-1,4-galactosyltransferase 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016474 True 1077 mRNA 0.60 6 20499298 20502189

Neighbor

gene id symbol gene type direction distance location
AMCG00016475 casr coding upstream 16302 20478055 ~ 20482996 (+)
AMCG00016468 NA coding upstream 33008 20448350 ~ 20466290 (+)
AMCG00016465 NA coding upstream 59214 20435767 ~ 20440084 (+)
AMCG00016466 pdha1a,LOC107599948,LOC107726384,LOC107672749,LOC107592287 coding upstream 65087 20426493 ~ 20434211 (+)
AMCG00016467 NA coding upstream 79480 20408303 ~ 20419818 (+)
AMCG00016478 NA coding downstream 79757 20581946 ~ 20594925 (+)
AMCG00016482 NA coding downstream 370204 20872393 ~ 20876476 (+)
AMCG00016489 arrb1,LOC108440366,LOC108277835 coding downstream 1359599 21861788 ~ 21904114 (+)
AMCG00016493 NA coding downstream 1403193 21905382 ~ 21906361 (+)
AMCG00016495 NA coding downstream 1431965 21934154 ~ 21935071 (+)
G13700 prdx4,LOC107734341,LOC107665442,LOC107654298,LOC105904605 non-coding upstream 73456 20424137 ~ 20425842 (+)
G13685 NA non-coding upstream 95792 20393511 ~ 20403506 (+)
G13682 eif2s3,LOC107727229,LOC107686712,LOC107741782 non-coding upstream 154226 20342074 ~ 20345072 (+)
G13681 NA non-coding upstream 179959 20319017 ~ 20319339 (+)
G13662 spcs2,LOC107677086 non-coding upstream 209464 20287075 ~ 20289834 (+)
G13791 NA non-coding downstream 112556 20614745 ~ 20617697 (+)
G13798 NA non-coding downstream 144646 20646835 ~ 20652272 (+)
G13799 NA non-coding downstream 151481 20653670 ~ 20655615 (+)
G13873 NA non-coding downstream 1419964 21922153 ~ 21922461 (+)
G13892 NA non-coding downstream 1733982 22236171 ~ 22236399 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 619573 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 2025609 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 2899717 17562418 ~ 17599581 (+)
G13012 NA other upstream 3377366 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 4013295 16484355 ~ 16486003 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 1279917 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 3364078 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 3435862 23938051 ~ 23945024 (+)
G14057 NA other downstream 3577828 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 3977517 24479706 ~ 24561807 (+)

Expression


Co-expression Network