AMCG00016475 (casr)


Basic Information

Item Value
gene id AMCG00016475
gene name casr
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20478055 ~ 20482996 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016475
ATGAGGTTTTATCTGCACTATCTTGTCCTGCTGGGGTCCAGCTGCGTTATCTCCACCTATGGGCCACACCAGAGGGCGCAGAAGAAGGGAGACATCATCCTGGGGGGGCTCTTCCCCATTCACTTCGGAGTCACAGCGAAGGACCAGGACCTAGCAACACGGCCCGAATCCACGGAGTGTGTCAGCTACGCCTCCTCAAGCCGCCTGCTCAGCAATAAGAACCAGTACAAGTCATTCATGAGGACCATTCCCTCAGACGAGCACCAGGCCACGGCCATGGCAGAGATCATTGACTTCTTCCAATGGAACTGGGTCATCGCTGTGGCGTCGGATGACTTCTACGGGCGGCCCGCCATTGAGAAGTTTGAGAAGGAGATGGAGGACCGGGACATCTGCATCCACCTGAATGAGCTGATCTCCCAGTACTTTGAGGAGGAGCGCATCCAGCAGCTGGTGGACCGTATCGAGAACTCCTCGGCCAAGGTGATTGCAGTGTTTGCCAGTGGGCCAGACATGGAGCCGCTTATCAAAGAGGTGGTGAGGCGTAACATCACTGACCGCATCTGGTTGGCCAGCGAGGCCTGGGCCAGCTCCTCTCTCATTGCCAAGCCCGAGTTCTTCCATGTGGTGGGTGGCACCATCGGGCTCGCCCTCAGAGCTGGACGAATTCCTGGGTTCAAGAGCTTCTTGCAGCAAGTCCAGCCCAAGATGTCATCGCAAAATGAGTTTGTCAGGGAGTTCTGGGAGGAGACCTTCAACTGCTACCTGGAAGACAGACCGAGACATCTAGTGAGGGGAGGTGCAGCCATGAACTCCAGACGCCCCTGCACTGGAGAGGAGGATATCAACAGCGTAGAGACGCCCTACCTGGACTACACACACTTACGCATCTCCTACAACGTGTATGTTGCCGTCTACTCCATTGCCCACGCGCTGCAGGATATCCTCACCTGCACGCCTGGGAAGGGTCTTTTCACCAATGGCTCCTGTGCTGACATCAAGAAAGTGGAAGCCTGGCAGGTTCTTAAACAGCTCAGACACTTGAACTTCACAAACAGTATTGGGGAGCAGGTAGATTTTGACGAGAGCGGTGACCTCCTGGGGAACTACACCATTGTGAACTGGCACCGCTCCTCAGAAGATGACTCCATCGTCTTCGAGGAGATCGGTCACTACAATATGCATGTGAAGAAGGGACCTCGGCTCTTCATCGACAAGACTAAGATACTGTGGAATGGATACCATAAAGAAGTGCCTACCTCTAACTGCAGTGAGGACTGTGAACCAGGGACCAGGAAAGGGATAATCGATGGCATGCCCACGTGTTGCTTTGAGTGTAAAGAGTGCTCTGATGGGGAGTTCAGTGATCACAAAGATCATGATCTGTGTGGTCTGGCTGTGGCTGCCCGGGCAACACTGCGGCGCAGCACTGTCTCACGGAAGAGATCCACCAGTGTGGGTGGCTCCTCCGTCTCTacaccctcctcctccatcaGCTTCAAAAGCGACGGAGAGGAGGCACCCTCCCCCTCTGGGCGGCAGAGGGGCTGCAAGCAGAAGGTGAGCTTCGGCAGCGGCACGGTCACACTCTCCCTGAGCTTCGAGGAGTCCAGGAAGAACTCGGTGCCCGTGAAGAACAGCAGGGGAAAGAACTCCCTGGAGTGCAAGAACAGCGACGACAGCATGTTGAGGTGCAAGGCCCTGCAACCCCTGCAGAACAGTGAGGCAGGGAGCCAACCCAGCTCCAGGACAGCCAGCAACAACTCCTCGCAGGAGTCCATCAGTGCCAGTAAAAGGGAGGAGGCCCACAACTCTGAAGAAACTGCTTCCTTCCCTTCTGCAAACTCCATCAACTTTGTGGCCAATATGTTCACAGAGAACCCTAGCAACTCTTAA

Function

symbol description
casr Predicted to enable G protein-coupled receptor activity. Acts upstream of or within calcium ion homeostasis and skeletal system development. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in several structures, including head; integument; nervous system; notochord; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including autosomal dominant hypocalcemia (multiple); hypercalcemia (multiple); hyperparathyroidism (multiple); idiopathic generalized epilepsy 8; and nephrolithiasis (multiple). Orthologous to human CASR (calcium sensing receptor).

NR:

description
PREDICTED: extracellular calcium-sensing receptor

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04612 CASR; calcium-sensing receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016475 True 1896 mRNA 0.55 6 20478055 20482996

Neighbor

gene id symbol gene type direction distance location
AMCG00016468 NA coding upstream 11765 20448350 ~ 20466290 (+)
AMCG00016465 NA coding upstream 37971 20435767 ~ 20440084 (+)
AMCG00016466 pdha1a,LOC107599948,LOC107726384,LOC107672749,LOC107592287 coding upstream 43844 20426493 ~ 20434211 (+)
AMCG00016467 NA coding upstream 58237 20408303 ~ 20419818 (+)
AMCG00016469 NA coding upstream 85566 20380613 ~ 20392489 (+)
AMCG00016474 NA coding downstream 16302 20499298 ~ 20502189 (+)
AMCG00016478 NA coding downstream 98950 20581946 ~ 20594925 (+)
AMCG00016482 NA coding downstream 389397 20872393 ~ 20876476 (+)
AMCG00016489 arrb1,LOC108440366,LOC108277835 coding downstream 1378792 21861788 ~ 21904114 (+)
AMCG00016493 NA coding downstream 1422386 21905382 ~ 21906361 (+)
G13700 prdx4,LOC107734341,LOC107665442,LOC107654298,LOC105904605 non-coding upstream 52213 20424137 ~ 20425842 (+)
G13685 NA non-coding upstream 74549 20393511 ~ 20403506 (+)
G13682 eif2s3,LOC107727229,LOC107686712,LOC107741782 non-coding upstream 132983 20342074 ~ 20345072 (+)
G13681 NA non-coding upstream 158716 20319017 ~ 20319339 (+)
G13662 spcs2,LOC107677086 non-coding upstream 188221 20287075 ~ 20289834 (+)
G13791 NA non-coding downstream 131749 20614745 ~ 20617697 (+)
G13798 NA non-coding downstream 163839 20646835 ~ 20652272 (+)
G13799 NA non-coding downstream 170674 20653670 ~ 20655615 (+)
G13873 NA non-coding downstream 1439157 21922153 ~ 21922461 (+)
G13892 NA non-coding downstream 1753175 22236171 ~ 22236399 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 598330 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 2004366 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 2878474 17562418 ~ 17599581 (+)
G13012 NA other upstream 3356123 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 3992052 16484355 ~ 16486003 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 1299110 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 3383271 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 3455055 23938051 ~ 23945024 (+)
G14057 NA other downstream 3597021 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 3996710 24479706 ~ 24561807 (+)

Expression


Co-expression Network