AMCG00016476


Basic Information

Item Value
gene id AMCG00016476
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20517799 ~ 20523757 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016476
ATGCCGAGAAGAAGGAACATTCTCACCACGCTGTTCATAGTGCTGCCCTGGACCATCCTGCTCAGCATCTGGCACCAGAACCCGGCCACTCGCTACCTCACCATCCTGCGCAAAGAGACATATGAGAACCGCAGCGCCAGGAGCCTCCAGCCGCTCGTCAACTCCACCCAGCCCCGAGAGGAGCATGCCCCGTGCGTCCACCAGCAGACAACCATCCCCCCACAGCCGCCGCCGCCCAGATATGTGTACTCCCGCCCACCTGGCTGGTCCCGGCTGCTGCCCACCATCTACATCATAACGCCCACCTACACGAGGCCAGTGCAGAAGGCAGAACTGACCCGGCTGGCCAACACCTTCCTGCACGTCCAGAACCTCTACTGGATCGTGGTGGAGGACTCGCCCCGGAGGACCAACCTGGTGGCCCTGGTGCTGGAGAGGAGCGGTCTGAACTTCACCCACATCCACGTGGAGAGCCCCAAGAGCGTCAGGATCGGCCTGGCCAAGTCATCCACCCACACGCCCCGGGGGACCCTGCAGAGGAACCTGGGGCTGCGCTGGCTGAGGGACAACCTAGTGCTCAACGACTCCCTGCAAGGGGTGGTGTACTTCGCCGACGACGACAACACCTACAGCCTGGAGCTGTTCGAAGAGATGAGGTACACACAGAAGGTGTCTGTCTGGCCTGTGGCTTTCGTGGGGGGGCTGAGATACGAGGCCCCAAAAGTCAGCGGCGGGAAGGTGGTGGGCTGGAAAACCGTGTTCGACCCCAACCGTCCCTTTGCCATCGACATGGCCGGATTCGCCATCAACATCCGATTAGTGCTCATGAGGCCTCAGGCCAACTTCCAGCTGAACGGAGTCAAGGGTGGCTACCAGGAGACCAGTCTGCTGAAGGACCTGGTGACCATGGCCGAACTGGAACCCAAAGCTGCCAACTGCACCAAGGTACTGGTCTGGCACACCAGGACAGAAAAGCCCACGCTGGTGAAcgaaggcagacaggggtttacAGATGTGAAGGTGGAGGTGTAAAGCATGGAGACGTCAGCCTGTCGTATTTGTGATGGATGCCAGCCGTGGGGATGTGCTCAGTTTTGGGTGCCGCACCAGACACGGAGAGCGCTGCACCTCACCTCTGCCCAGCCGGGGCAGTGCCACAGgagcagaggtcagaggtcagagccAGACTTCACTGAGCTGTGCGCTTCCCTGCAGCTGAGAGATTCGCAGCGCCACGCAAGACTGAGCACACCGAACCatgggggagaggaggaggacgagaACCGTAAGCCAAGCCGAGAAAGCAGCACTTCAGAGCTCGCAGAGAAAAAAGGGAACGGAAACTAAGAACTCTTTATCCGACTGAATGTAAAATCTCAGAGCACGTCAGTACTGTTCAACGGGTTCCCATGCATCTCTGCTTGCTCTGCGTGTTGCCCGTAACAGGAACTAAACACTAAACCCAATCTCTTGTTCTCCTGACAACGTTTTTCCCTcggtacattaaaaaaacacactcacgTTATTTGTAATCTGTTTTGCATCAGCCGTTTTTGCAGCCTGCAATAAATCTTGTTTGAACCTGGGGAACACGTTTGAGGACAAACCTTCCCCGCTCGCCTTGCATTGCCGATACAGCAGGAACGCGGGTGTTTAGGCTGCAGAAGCGATGCCTGAGTCAGCATTTCTCCACCGTGTCGTTCTCTGGAGCCAGATGACATCATCGCATTAATTAGTACCAAATGATAAAGGGGCTACGAAGCTGATTGCTAAGAGGACATGAGACTGCGTTTCTAAAGCTTGGCTTATTAATCTTATCACTATATATGGaccttatttaaaaacaatatttaaaagacaTCAAATAGACAACGCATAGTCACTTGGGCTCTCCAGCATATGGGGGGGGGCTCACAGCAGTTCACTCtgagttattttttgtttgtttgtttgttttttaaaaacacaacaagacCTCTCGTAGTGTCTTCGTGTAAGTTTACATGagatttagttttaaaacagaAGTCTTCCAAATACTTCCAGATGTCACATTTGAGGGGGATGTAAATAATGCCTgtgagatttaaaatatttccatttgtcACAGATCCTCTTCCCTCCTGTGTTTGATTAAGCTTTATTGGAGAGCTTTCTCATCACTGAATTGATGTCACAGTTTGTCACAGTTCTCTGTAAAGAGTTCTGCAAAGTTATGTCCAGTGTTCATCTCattggaatataaaaatgtaaaaatcgaTACATTCCAcatcagtttaatttgatttggttttcttgtttgtgtgtttatagtcTCTCAGAGTAACTCATAATCAACAGCAGAGTATCAGACCGAGGATTGTGAGCACAAAGCCCGAACACCACAAACAGCTCCCTATGAACACCACACGATAAAGGCCTGTTAGCAGGAGTTAATAAAGAGACTCCTTAGAAATCCAAGGTCAGGAAAGCACAACGGAAACcgaaaacatgcaaaaaatacaaaaaacaaaagaaaaacattgctcTAAAGAAGcttttgtatttacttacacagttaaaattaaattaatctatatAGGTGTTGTAAATGGACTGAGAAAATACAACTGTGGAGCAAAACTACAaacacatactatatat

Function

GO:

id name namespace
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K20869 IRX9; putative beta-1,4-xylosyltransferase IRX9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016476 True 2643 mRNA 0.50 5 20517799 20523757

Neighbor

gene id symbol gene type direction distance location
AMCG00016477 NA coding downstream 7331 20506848 ~ 20510468 (-)
AMCG00016471 NA coding downstream 70768 20441545 ~ 20447031 (-)
AMCG00016470 prdx4,prdx2 coding downstream 92049 20421954 ~ 20425750 (-)
AMCG00016472 sat1a.1,sat1,LOC107654323,LOC107734365,LOC107665519,LOC107591481,LOC107725087 coding downstream 112023 20401388 ~ 20405776 (-)
AMCG00016473 sat1a.2,sat1,LOC107562204,LOC107591482,LOC107725150,LOC107654323 coding downstream 119050 20393597 ~ 20398749 (-)
AMCG00016481 NA coding upstream 400223 20923980 ~ 20973210 (-)
AMCG00016483 NA coding upstream 463235 20986992 ~ 21012361 (-)
AMCG00016484 NA coding upstream 550337 21074094 ~ 21245418 (-)
AMCG00016485 igsf11 coding upstream 1165054 21688811 ~ 21709689 (-)
AMCG00016486 NA coding upstream 1387113 21910870 ~ 21921639 (-)
G13762 NA non-coding downstream 4395 20468246 ~ 20513404 (-)
G13766 NA non-coding downstream 25778 20486881 ~ 20492021 (-)
G13680 NA non-coding downstream 201220 20315742 ~ 20316579 (-)
G13615 NA non-coding downstream 512859 20003149 ~ 20004940 (-)
G13414 NA non-coding downstream 1259242 19258323 ~ 19258557 (-)
G13789 NA non-coding upstream 71572 20595329 ~ 20598765 (-)
G13806 NA non-coding upstream 123079 20646836 ~ 20652268 (-)
G13812 NA non-coding upstream 237666 20761423 ~ 20761693 (-)
G13819 NA non-coding upstream 384161 20907918 ~ 20908118 (-)
G13860 NA non-coding upstream 1258307 21782064 ~ 21782296 (-)
AMCG00016453 NA other downstream 382252 20128908 ~ 20135547 (-)
G13367 NA other downstream 1412418 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 2976457 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 3251052 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 3647797 16866318 ~ 16870002 (-)
AMCG00016479 NA other upstream 92752 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 142385 20666142 ~ 20683024 (-)
G13962 NA other upstream 2931335 23455092 ~ 23455811 (-)
G13969 NA other upstream 3175392 23699149 ~ 23700255 (-)
AMCG00016504 NA other upstream 3317305 23841062 ~ 23862739 (-)

Expression


Co-expression Network