AMCG00016478


Basic Information

Item Value
gene id AMCG00016478
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20581946 ~ 20594925 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016478
ATGCCCTTTTCGAAGCACTGCCCCCTCACAAGACCGTTTAAATGGGAGATGGGCATCATCAAAGTTATTTCCGAGTTTGGCACAGACCCATGCCCAGACCTGACGAGGGAGGTGTATCTGCAGGATATTCACTGCGTGGGGTCCCTCTGCAAGCTCTACTTCAGAGAGCTGCCAAACCCGCTGCTCACCTACGACCTTTACAAGAAATTCACGGATGCAGTGTCGGCCAAGAATGAGCATGAACAGTTGCAGCGAATTCAGGATGTCATCAAGGAGCTTCCTGCTTCTCACTACAGGACCCTGGAATATCTCACCAAGCACCTCAGACATCTGGCCTCTTACAGCACCGAGACCAACATGCATGCAAGGAACCTGGCCTTGGTGTGGGCTCCCAACTTGCTCCGGTCCAAGGAGATCGAGGTGTCCAAGTGCAATGGGGACGCGGCCTTCATGGAAGTGCGGGTCCAGCAGACGGTGGTGGAGTTCATCTTGAACCACATGGAGCAGATCTTCAGCATCAGTGGCtgcaccagcagcagcagtcctCCTAAAGTAGAGAATGATGAGCGCAGCCTGGAGGGTGGGTGCCCAGCTCTCCTGGTCAGCAGCCAGTGTGCGCCCATGAAGCTGGTGAGCCTGGAGGAGGCGCAGGCACGCTCGCTCAGCCCCAACCACCCGGCACGCCGAGagcgacagagagagaacagccTGCCAGATGCCAGCACTACCACCCTGTACCACACCGTTATCGACCTCCCCGACAGCAAaagaaagttctcaGGAAAATCCAAGAAGTGGAAGTCCATATTTAACCTGGGGAGGACCATGACTGAGACAAAGGGTAAACTGAGCCGGAATGGCAGCGTGTTTGTGAGAGGCCAGAAACTCTCGGACGACGACAAGGACAGCGAGTTCAAGCGGCCTGCTGGGACTGGCGGATTCATCATGCCAGCATTCAAGTCGCGCACCCTGGGCTCCGGCAGCACCTTCGACCTGAGCAAGAGGGATCATGAGTGGGACTATGAGCTGGAGCGGTCATCTGGTGCCATGGGAGGAGGATCGCCGGGAAGTCATGGTCAGAGCGAGGCTAGAGTGGGATCGAGGAGCTCGACGCCACAGCAGAAACAGCTGCCGGAGCAGCTGAAGGTGTTCAAAGGTGACGACCTGGGCCGCTGTGAGCCCACCTCCCCCAAGACTAGGAGGATGTTCTACTCCACAAGTGCCAGTGATGGCAGCACCAAGCCCACCTTCCCTGGCAGCCTCTTCCCACTGGAATCCTCACCGCGACACCAGCGCAAGGCTCTCAACATCTCTGAGCCCTTCGCAGTGTCCGTGCCTCTGCGTGTGTCGGCTGTCATCAGCTCCAACAGTACCCCCTGCAGAGCACCAGGCAAGGACAAGCAGGACAAGCAGAGTCTGCCCTCTGTCAGCGAGGTGGCCTTACTCAGGTCCGGTAACGAGGGCACGCTGTCAGAGCAGGGCCGCAgtgggagcagcagcagcggctgCAGCAGCGCCAGCAGCAACAGCTCAGTTTCCCTAAAGAAGGACGAGAAGTCAGTGATGGTCACAAACAGTGGGGAAGAGGTCAACACCAGTATGGATGTAGCAGAAGGACATAATCCAGAGCCGAGGGAAGGCCGCACACGAGAAGATATAGAGAAATCACCCCCCGTCAGAGTTCAGCAGCCTCCTTCTCTACCCACACTGCACCCTGTCTCACCCGTCCTAAGCACAGACTCAGCCGTTAGAGGGGAACCTCTGCCCATGGCAAAACCTAGTGGTCTGCTGGTGACGGATCTGGTCAAACCCGAGACCCAACTGGACAACCTAATGAAGCAAAATCAGAAGCTCAGCAGGTTGAGCGAACTGGATGAGGAATCAACGACTAATGCTGCGATGGATGAGCTGTGGCCTGACATTCATCTCGAGCTAAAAATAGTTGAGCCTGATGTTGATATTATTGATGATAAATTTGAGTCAGTCCCACTCTTCACTCACAACACCAAGGATGAAGTACAGCAAAAGCCAGACCCACATGCGAAACGACGCAGCAGTTTCCCCACCTATCCTTTGTTAAGCTGTGGACAGGTTTCACTAGCAGAAAAAGCACTCAAGACAGACCCCCATAATGGCAGTGCCAGTTTTGGGGGCATTTCAGACAGAAGACTTTCATTTGATACCAGTTTCAATCCAAAGGCAGATGTCAGGAAACAAAAAGCGGGCACTGAATATAAAGTTTCCACAAAACCTATGGATGGCACAGGAAATGAACTACCTGTACAGCCCAAGGATACAGAGAAAATACTCTGTCCTTCTACTGAGTTGCCCCCAGCTGTAATATGTGGAGCCTCAGCTACAAGGAGGAGGGGTTCAGAGCCTGGTCCAGAAGGTATATCCAAGGTGGGAGAAATGAATGTTTTGATTAAGCCCTCAAGTCCAAAAGACATAGCAGGAAAATGTGAGAAACAGAAGGAGGCTCCTAGATTACCCCAAACTGGTGAGAGTAAGGACTTCTCTGTTGAACTCAGGAGGAGTATTTTTAGGCTTTCTAAGCAAATGGAAGAGCGTCCGCAATCCCTTGATCTTAATGAGAGGGATGAGGAGGACATGTGGGGGGACAATGCGGGGGCTTTAGAGTTGGTGGAGCCGTGGGAAGACTACAGCACAACCAAACAATGGGTAACCAGTCCCCTGCATTCTCCAAAAGGAATAGATTTCCTACAGATGCCCGAGGGAGTGCCTTCATGTGAAAACAGGGAAAATATCTTCTTCAACAAACCTCAAAACTCAGGGGCCTCTGCTCCTGGCAAAGAAGGTTTGAAGGAATTGTGCCTAACTGGTGTCAAAAAGGATTCGACTGATGACTCATCTCCAGGAAATATTGATCTGCAGGACTGTAAGCCAACTTCCATAATCAGTGTGCAAGCTGAGGAGCCCTTATTACCACCCATTGCTTCTCCACACCAGGTTGATGTCCAGAAACATAATGGAATgcaaccagaaaaaaaacagcttgcAACTTCCAAGGACCATCTAACCTTTGAAAAGCCTGCAAAACCCgaatcagaaaacaaagaatCTTTAAAACAGGAAATCACCACAACTTCTCAGAGGCCTAACTTAAAGGAGATGCACAAATTGAAATCCCTAGATGGTTTAGAGTctgacacacagaaagaaaacgTGGTTCTAAAACACAGGCCTTCCTCGCTCAACTTGGACTTGGCAAGTCCCTTTGGTAATACCTACGTGAAAGATGGATCAGATAATCCTTTTAAATGGAGCACTGACGTTTTCTCGGCCGAAACTGCATTGGCCAAGCGAGGTTCAGTGACTCCGTCCGAGACAAAGACCTCAGAAGAATCAGTTGGCAAGATCAAATACAGCACTTCATCTATAGAGCTCGACATGTTCCTGACCGACCGACAAGCTCCGGTGAGAAGGAACTCAGCTCCGGTGAGTGTCTCCTCCGTTAGGACCTCTTTCATGATCAAGACATGTCAAGCCAAGGCGGTCCCAGTGATACCCCCAAAGATCCAGTACACTCAGATACCTCAGCCTCTGCAGGTGAAGAACTCTGAGAGCCTGTCAGAGAAAGACCCAGAGAAACCGTCAAGCAACTCCAAAAAAGAACAAGATCCTCCCCAGTCTCCTCCCTTCACAAGGGATCCCAAGGATTCAGAGAAGGAGAACAACGAACCGTCCCCCAAAACCTCCAGGCAGGCTGGGAGTTATGCTTCCGTGGAGATGCCTCTGTCGAAGTCCACGACCCCAACAGATCCTCCTGTGCTGAGGAGGAAGCGCAGTTCCAATGGAGAGGCCTTCCTGGACTCCAGACTGGACAGATCTCCAGGCCTGCAGAAGCCCTCCTACCGTGCCAGGCCTACTCGGCCACAAAGCCTTATTCTGTTCAGCCCCCCCTTCCCTATCATGGATTACCCGTCGACGGGAGAGGGTGGCAAGTTACTCCTGTCCCCCATCAAGAGCCCCACAGACACAGCAGTCCTGGATAGCTTGTGCAAGGAACTGCCCGAGAACCTGAAGACTCCTGAGGGGGTGACCTTGAGGAGTAAAATGAGCATGCCCAAAAGTGGACAGAGACTAGAAACGTCAACGAGTTGCTTCTACCAGCCTCAGAGGAGGTCCATGATATTTGACAGCAGAAGCAGCAGGCAAATTGAATGA

Function

GO: NA

KEGG:

id description
K20646 ARHGAP31, CDGAP; Rho GTPase-activating protein 31

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016478 True 4188 mRNA 0.52 10 20581946 20594925

Neighbor

gene id symbol gene type direction distance location
AMCG00016474 NA coding upstream 79757 20499298 ~ 20502189 (+)
AMCG00016475 casr coding upstream 98950 20478055 ~ 20482996 (+)
AMCG00016468 NA coding upstream 115656 20448350 ~ 20466290 (+)
AMCG00016465 NA coding upstream 141862 20435767 ~ 20440084 (+)
AMCG00016466 pdha1a,LOC107599948,LOC107726384,LOC107672749,LOC107592287 coding upstream 147735 20426493 ~ 20434211 (+)
AMCG00016482 NA coding downstream 277468 20872393 ~ 20876476 (+)
AMCG00016489 arrb1,LOC108440366,LOC108277835 coding downstream 1266863 21861788 ~ 21904114 (+)
AMCG00016493 NA coding downstream 1310457 21905382 ~ 21906361 (+)
AMCG00016495 NA coding downstream 1339229 21934154 ~ 21935071 (+)
AMCG00016492 NA coding downstream 1395481 21990406 ~ 21991423 (+)
G13700 prdx4,LOC107734341,LOC107665442,LOC107654298,LOC105904605 non-coding upstream 156104 20424137 ~ 20425842 (+)
G13685 NA non-coding upstream 178440 20393511 ~ 20403506 (+)
G13682 eif2s3,LOC107727229,LOC107686712,LOC107741782 non-coding upstream 236874 20342074 ~ 20345072 (+)
G13681 NA non-coding upstream 262607 20319017 ~ 20319339 (+)
G13662 spcs2,LOC107677086 non-coding upstream 292112 20287075 ~ 20289834 (+)
G13791 NA non-coding downstream 19820 20614745 ~ 20617697 (+)
G13798 NA non-coding downstream 51910 20646835 ~ 20652272 (+)
G13799 NA non-coding downstream 58745 20653670 ~ 20655615 (+)
G13873 NA non-coding downstream 1327228 21922153 ~ 21922461 (+)
G13892 NA non-coding downstream 1641246 22236171 ~ 22236399 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 702221 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 2108257 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 2982365 17562418 ~ 17599581 (+)
G13012 NA other upstream 3460014 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 4095943 16484355 ~ 16486003 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 1187181 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 3271342 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 3343126 23938051 ~ 23945024 (+)
G14057 NA other downstream 3485092 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 3884781 24479706 ~ 24561807 (+)

Expression


Co-expression Network