AMCG00016480


Basic Information

Item Value
gene id AMCG00016480
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20666142 ~ 20683024 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016480
ATGGGCAGAGTTTCTCTGGGAACGAAGCGCATTCAGGTTAGGAGAAACCACGCAGCAGCTGAAAGACATTTGGTATCTGCGGAGAAGAATGAGATTACTCACTTGGGCAGAATCTGTACCGCGCTGGCCCTCCTCTGGCAGGAACCTGTAGCTCGTCCAGTGCGTCCTCACCAGCTTCACAATCACATACCCAACACCTCGTCATCTGACTGTGACATCAGTTGCAAGGGGATGACCGAGCGCATTCACAGCATCAACCTCCACAACTTCAGCAACTCTGTACTCGAGACACTCAATGAGCAGCGCAACCGCGGCCACTTCTGTGACGTGACAGTTCGGATCCATGGAAGCATGCTGCGTGCCCACCGCTGTGTGCTGGCTGCAGGGAGCCCCTTCTTCCAGGACAAGCTCCTCCTGGGCTACAGCGACATCGAGATCCCCTCTGTGGTCTCCGTGCAGTCCATCCAGAAGCTGATCGACTTCATGTACAGCGGGGTGCTGCGCGTGTCTCAGTCAGAGGCCCTGCAGATCCTCACGGCCGCCAGCATCCTGCAGATCAAGACTGTCATAGACGAGTGCACCCGCATCGTCTCTCACAACGTGGGCTCCGGCGGGGCCAGGGGCTTCCCTCTCGTGCCTGGCGACTCTGGCCAGGAGACGCCCAGGGGAACCCCGGAATCCGGCACCTCGGGGCCCAGCAGTGATGCGGAGTCAGGCTACACGCAGCCACACTCCCAGCAAAGCCTGGAGCGCATCTACGCCTCCCTGTACACCTGCTCTGGGATCTCCATGCAGAACGGCACAGGGGAGCGTGCCTACTACGGAGGAGCCATCGTGGGCAATTACGACACTGCTCTGTCACTCCAGAAAGACCAGCGCGTGCAAGACCCCGCCTGGATCGCCCGCATCCACGACAAAACGCAGCAGATGGAGAGGTTCCTGTCCACCCCCGAGACCACTCACTGCCGCAAGCAGCCCCGTCCCGTGCGCATCCAGACCGGCAGTGTTCACATTAAGCAGGAGGCGGAGGACGACTACGGCTGCTACGGCCAGGACCGGATGCAGGGCCTGGAGCGCAATGAGTCTGAGGAGTGCACCGAGGACACGGATCAGGCCGAGGGCGCAGAAAGCGAGCCCAAAGGGGAGAGCTTCGACTCCGGGGTGAGCTCCTCGATCGGCACCGAGCCCGACTCCGTGGAACAGCAGTACCTGGCCGGCTTCGGGCGCGAGGGCAACCCAGATGGTATGCAGACCGAGCAGACCGAGCTCATGGGAGAGCAGTCGCAGCAGATCGAGGTCAACGACTCCTCCCCAGAGCAGATGAATGATATGGACGGTGACATGGGGGGCTCCCAGACTGGGGGGGACATCACCATGCTGAGCGAGAAGATGGTGCTGCAGCCTTCGTTGAACCCCATTATATCGCAGCCCATTTCCAGCACACAGCTCTATCTGCGGCAGCCCGACACCCTCACCAGCAACCTGAGGATGCCCCTCACCCTGACCAGCAACACCCAGGTCATCGGCACGGCCGGGAACACGTACCTGCCAACACTGTTTGCCACGCAGTCAGCGGGTAGCGCCAAGCCCTTCCTGTTCAGCCTGCCACAGACACTGGGCGGCCAGCAGCCTCAGTTCGTGGCCGTGCCGCCACCCAGCCTGACTCCCTTCTCCACCCCACTGTCGGCCCAGCAGCCCTCGGTTCAGCAGCAGGGGGGGCAGAGTGCGACGGGAGGCGGGCAGGGCGAGAAGAAGCCCTACGAGTGTACGCTCTGCAGCAAGACCTTTACTGCCAAACAGAACTACGTCAAACACATGTTCGTGCACACAGGTGAGAAACCACACCAGTGCAGCATCTGCTGGCGTTCTTTTTCCTTGAAGGATTACCTAATAAAACACATGGTGACGCACACGGGGGTCCGGGCCTACCAGTGCAGCATCTGCAACAAGCGCTTCACCCAGAAGAGCTCCCTGAACGTCCACATGCGGCTGCACCGGGGGGAGAAGTCCTATGAGTGTTACGTCTGCAAGAAGAAGTTTTCTCACAAGACCCTGCTGGAGCGGCACATGGCCCTGCACAGCGCGGGAGGCGGGGGAGCCAGGGTAACCGGGGTTCCTGGGGTGACGGGGGTGACCGGGGTGACGGGGGTGAGTGGGGTGGGCGGAGGTGCCGGTGGGGGCCCCGTGTCGATCCCCGTGCCTATCCCCGTTCCCGAACCCGGGGCCGGAGCCGTGGCCGGGGCCATGCCTGTGTCTGGAGGGGCCGGAGCGGGGGCCGGAGCGGGGGCCGGTGTCGGAGTTGGAGTCACGGCTGAAGCCGGCTGTCAAGAGGGGACCACCTACGTGTGCTCGGTCTGCCCTGCCAAGTTTGACCAAATCGAGCATTTCAACGATCACATGCGCATGCATGTCTCGGATggataa
>TU17110
CCCGTGCCTATCCCCGTTCCCGAACCCGGGGCCGGAGCCGTGGCCGGGGCCATGCCTGTGTCTGGAGGGGCCGGAGCGGGGGCCGGAGCGGGGGCCGGTGTCGGAGTTGGAGTCACGGCTGAAGCCGGCTGTCAAGAGGGGACCACCTACGTGTGCTCGGTCTGCCCTGCCAAGTTTGACCAAATCGAGCATTTCAACGATCACATGCGCATGCATGTCTCGGATggataagtaaaaaaaaaaaaaaaagaaaaaaaaaaaagaaacttaaaacttctttagaaaaaaaaaaaaaagaaaatggcactagattttttttttcttattttggggCATGAAGAGTTATGAGTATAGACACTGGCACATTACGTTTCCCAGAGACAAGATCCTTTTTTTTGGtattcttaaagaaaaaaaaaaaaagaaaaaaaaataagatggtGGCCTTAAGGCTATGTAGTTTGCTAACGATCCACTGGCTGGATCCTTACTACAGGCCTCTAAATGTATGCTTTCTTCTAATACTGGTTTATGTGTTGAACACTACAACAAGGCCTACTATCTCTAAAAagcaaacacatatatacagtgaaaattaacaaaagTAGATATGTTCCCATTCAGACCGTTTTGGACACTATAATAGTCCATGCTAACTGTGGTATACAGGCCTCTTTTGAAAAGTACCTGGTTTGTACTTTGTAATCATTCTAATGTAATGATGGTCACAAGTTTGCCTTTTATATATAGGATATGAAAAGGAGTTATTATGACACTgggttattatttattgtaatggtATGGAGGGATTCAAATGCAGCTGTCATTAGGTACAAGac

Function

GO: NA

KEGG:

id description
K10501 ZBTB20, HOF, DPZF; zinc finger and BTB domain-containing protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016480 True 2424 mRNA 0.62 4 20666750 20683024
TU17110 False 839 lncRNA 0.41 1 20666142 20666980

Neighbor

gene id symbol gene type direction distance location
AMCG00016476 NA coding downstream 142385 20517799 ~ 20523757 (-)
AMCG00016477 NA coding downstream 155674 20506848 ~ 20510468 (-)
AMCG00016471 NA coding downstream 219111 20441545 ~ 20447031 (-)
AMCG00016470 prdx4,prdx2 coding downstream 240392 20421954 ~ 20425750 (-)
AMCG00016472 sat1a.1,sat1,LOC107654323,LOC107734365,LOC107665519,LOC107591481,LOC107725087 coding downstream 260366 20401388 ~ 20405776 (-)
AMCG00016481 NA coding upstream 240956 20923980 ~ 20973210 (-)
AMCG00016483 NA coding upstream 303968 20986992 ~ 21012361 (-)
AMCG00016484 NA coding upstream 391070 21074094 ~ 21245418 (-)
AMCG00016485 igsf11 coding upstream 1005787 21688811 ~ 21709689 (-)
AMCG00016486 NA coding upstream 1227846 21910870 ~ 21921639 (-)
G13806 NA non-coding downstream 13874 20646836 ~ 20652268 (-)
G13789 NA non-coding downstream 67377 20595329 ~ 20598765 (-)
G13762 NA non-coding downstream 152738 20468246 ~ 20513404 (-)
G13766 NA non-coding downstream 174121 20486881 ~ 20492021 (-)
G13680 NA non-coding downstream 349563 20315742 ~ 20316579 (-)
G13812 NA non-coding upstream 78399 20761423 ~ 20761693 (-)
G13819 NA non-coding upstream 224894 20907918 ~ 20908118 (-)
G13860 NA non-coding upstream 1099040 21782064 ~ 21782296 (-)
G13861 NA non-coding upstream 1102220 21785244 ~ 21785716 (-)
G13884 NA non-coding upstream 1458929 22141953 ~ 22142185 (-)
AMCG00016479 NA other downstream 29182 20616509 ~ 20636960 (-)
AMCG00016453 NA other downstream 530595 20128908 ~ 20135547 (-)
G13367 NA other downstream 1560761 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 3124800 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 3399395 17263601 ~ 17266747 (-)
G13962 NA other upstream 2772068 23455092 ~ 23455811 (-)
G13969 NA other upstream 3016125 23699149 ~ 23700255 (-)
AMCG00016504 NA other upstream 3158038 23841062 ~ 23862739 (-)
AMCG00016505 NA other upstream 3181557 23864581 ~ 23885258 (-)
AMCG00016531 NA other upstream 3626232 24309256 ~ 24323458 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location