AMCG00016489 (arrb1,LOC108440366,LOC108277835)


Basic Information

Item Value
gene id AMCG00016489
gene name arrb1,LOC108440366,LOC108277835
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 21861788 ~ 21904114 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016489
GTAACAGGTACCAAAAGTGTAACTGCTCCCCTTTCCTTACTTTTCCAGGGTCTTCAAGAAAGCAAGTCCAAATGGAAAGCTTACAGTTTATCTCGGGAAAAGGGACTTTGTTGATCATGTGGACCTAGTGGAACCTGTCGATGGAGTTGTTTTGATTGATCCCGAATacctaaaagaaagaaaagTGTTTGTGACGTTGACTTGTGCATTTCGGTATGGACGTGAGGACTTGGATGTTCTGGGCCTGACGTTCAGGAAGGACCTCTTTGTGGCCAATATTCAGGCCTTTCCACCAGTGCCGGAAGAGAAAAAACCCCTAACTCGTCTACAGGAACGTCTGATTAAAAAGCTTGGAGAACATGCCTACCCGTTCACTTTCGAGATTCCTCCTAACTTACCTTGCTCAGTTACCCTTCAGCCTGGACCAGAAGATACAGGGAAGGCCTGTGGCGTAGACTTTGAAGTGAAAGCTTTCTGTGCTGAGAACCTTGAAGAAAAGATACATAAAAGGAATTCTGTGCGTCTCGTGATCAGGAAAGTGCAATATGCACCGGAGAAACCAGGTCCTCAACCAATGGCAGAGACCACAAGACAGTTCCTCATGTCTGACAAGCCCCTCCACCTGGAAGCTTCACTGGACAAAGAGATTTACTACCACGGGGAACcgataaatgtaaatgttcatgtcacaaacaacacaaacaagacagtgaagaaaattaaaatctcagTGCGCCAGTATGCAGATATTTGCCTATTTAACACAGCACAATACAAGTGTCCCGTCGCAACAGAAGAGTCAGATGATGTGGTGGCACCTAGTGCTACCTTCTGCAAAGTCTACACTCTCACTCCTTTCCTCGCAAACAACCGGGAAAAACGTGGCTTAGCCTTGGATGGAAAACTAAAACACGAGGACACCAACCTGGCTTCCAGCACCTTGCTAAGGGAAGGAGCAAACAAAGAGATCTTGGGCATCATTGTATCTTATAAAGTTAAAGTAAAGTTGGTTGTATCTCGAGGAGGGCTCTTGGGAGACCTTGCTTCAAGTGATGTTGCTGTAGAGCTTCCTTTCACATTAATGCATCCCAAACCTATTGAAGAGTCATTCTACAGAGACGTTCCAGAACATGAAGCCCCCATAGATACAAATCTGATAGAATTTGATACCAACGATGACGATATTGTCTTTGAAGACTTTGCGCGACAGAGGCTCAAAGGGGCAAAGGACGACAaggacgaggaagaggagggggcaAACTCGCCCAAGCTGAATGACAGATAAGCCAGCCACTGTGGTCCTGTTCTGTACTGTGACACTGGTATACACAGGTGCCAGAAGCCTGCAGATAACCCAGAGCTGGGAGACCCTTTAACCTCACAGTGGTGCCATTGCTTTGTTCTtgttcacatttgtattttacttaacACAaagatgtaaaacaaacaacagaaaacaaactagTTCTCAGTGCACAGTGGTAGGGAAAAAAGCAATCTGTAGAAGGAGATATTCAGCACATTGTGATTACCAGGTAGATTTCAAGGAAAACAGACTCTGTAGAATAAGGTTTCCACTTTGGAGGACAGGAGTCTTGAGTCACAGCATGTCTCTGTGACACTTCATTATAAACAGATCCATGGGATTGTGagaatcataaaaaaaaaaatcacaacagattattgttttgttctagTTTTGTTGCTTGATTGTTTTTGAGAATGCAATTTGAGGAAAATGTTAATGATAATGAGTGACTAAAATTATTATCACTATTTAGTGTaacactataaaaaaaaatccaaactaCAAGCAAAACTACATAGAGGTAGTACATATGTATTATACCTTACACAATAAAGTACAGCATCATATCCTGATGCATTACATACAAGTATCACCATTTTGAATCAaatcttttgaaaacaaatatattcctTTTAACAGAACTAACTTTTCCTAATCATTATGAATGGagatatattcacacacatgcCAAAATTCAGACagatatgacatttaaaatcaaaagcaaaatcacgtcaatataaatcaacacacttattattttttcaggtgTATATTTCTaaaagtaacaaacaaacaaaaaccttctAGCCATTTTCTATGCTATAACAGTGTGTTATGCTCCATGGTTAAGGAATGACTCTGTATGATATGTAGTCCACTGAAGTGTAGCTATGAGACATTATTGACAGTGTCCCGCTATGGAGGATGCTGCCAGTGTGCGGCATGCCTTTGACTCACATttgaaaacaacccaaaaacaTAATATTGGAAGAACAGCTGCTGTAAACTGATACTGCCATCTCTGTACATCAGGACAGGTATGCATAATCTGTTGATGTCACACAGGACTCTGTAAACAGTCAAGAAGGTTTATTGTCACAGTGCTACAATCATAGTGTCTCTTTTAGAAACCAGATTTTTCTCAGTGACCATTTCAACCTACATTTTCACAGCATCAATTGAAGGGGCACCAGGAACAGATTTCCTTTTGTCATGCGGTATACATATCCTTTGCTTGGTTTCATCTAAGAAGCTCTGTTCAAAACAGAAcccttttgaatattttttgatgtgcaaataaactgaataaattcCTGTTTCACAAGGAAAAGCATAGACCTGACTGGTGAGAATCTAGCTTGCATGCTTACAGTTGCTATGCATTTCTACTTTTCCTGAGATTGGAACTTAACAcgacaaagaaaacaaaaacaaacaaaagaaaaatatatattgtttactacAGTTACAGAGATGTATTCCTACTACCCTTTTATCTATTATAATCTTCTGCTATTATGCTATACTTCAAGCTATATTGTATGCTTCATGTTATAGCTAGACCCCCTTAAAGTCTACATACTTTCATCAGCTTTTATAACtccatgctgtttttttttaaatatttcgaaaaaaaaaaaaaacatgctcatTTGAACATGATGTAAAAAGCAGTAGGCGTAACAATGCAAGAAGGCTTTTTTATGTGGGGATAGATTGCATCTCAGACTTCACACACACTAGTGTCTCAACACTTCCTACAACCCGAGATGCATCCACTACAGGAAATATTTGTTCTGAACTAGAAACGTTCTTGGTAttttcttaagaaaacaaaaatgaggtGGCTATGGTcacattttctgtgtatgtttgtttgctcCACCCAGGCACGTGAACAGATAAGATTAGATAAGACTGACTTTGCCCTTGGccttaatttgtaataataaatgtgaaagTGGGATTCGGTATCAACAGGTCTTGTAGATGTTGGTTTTTGTAATGAGGACAAATATGGCACCCTGGCATTTCAGTCTCTGTAGAGTCTTTTCGTTCCTTACCTCACTGAGTTCACGAAGGAAGGGCCTTGATGTCTCGCATGTAACTTGTACTTGTCAAAAACATGTAGCTTAATTTTCTTATGTccaataaatacagaatgtatgaattttgaaaattgattattctttttcagtattgttaatacaaatatataaggACAGGTCAAGTCATTTTTATGACCTTTCTTGTCATCTGTTGTAGCCTTTCATTTCCTGAGTTGCTTTGCAAATTAGACCAATGTACATTACATCTTTGAAGGATTCTTTTTCCAACATGTTATTGTATGTTTAAATCtctttttatacattaatttattggtTTAGTCGATCACTGTTGACAATGTCTTTCTACTGTGGCAATGCTAATAAAGGTGTCTGAATCTCTGTCAATCAAAGCTGAAGGCAGAGAtggtcaaatacatttcagttcacactttatacatttcttatgaAAATTATGGGATTGGACATGGGATTGGACACATggattattatttcttcagtaATTTGGGAAAACGAATGAAAAAACTATGAATAATTTGAATGGAAACATAAGAACTATATCTTATAAACAATACTGATTTCAGCAATTCCAATGTATGATCTCTCGTTTAAGTATATATCCTAACTCTAacatttcccccccacacacatcaGATATAATGTCTAGGCTTATGCTATTGTGTAAATTTACATATGCATTTACAAAACTGAGTTTTTGTATCTAATTGTGCGACATTTATTGTTAGCTTTCAAGTTTCTCTTTGATAGTAACAAGGGCtggaatgcaatttaaaatgactcACTCTCTTTCTTGTGGTATCAAAATAAGACCGTTGCATTAAGAAACTGCATCTGGGTTAATGCAAGGCCATCTGTCTGGTCACCAACATTTGCACATGAATATTGAGAAAAAgccatttttataaaataatagtaataaacagCAAATCTTGCAATGTTTGCAACTTAAATTATGCCTTGAGAACATTTACATGTTTCCATGTTTTTCGGTGGTTTggaaatatattcattattctaaatatttttGAGGACATTTCAGAGACATACTTTCCCTTATGGgttgttcatttaaataacacaatatatattttttcccagttGTATTTTGATCATCTTAAATAATGgtatatactactactactattactttTCCCTCCAATTGAAAGTCCAAGTGCATATCACTATAATAAATGTGcctaaatatacaatattaaccATTTCTTATGAGCAAGACATACCATCATTGCAATCCACTTCATTATACAGTACCGTCCCCAATGtcataatgaaaacaaagaaatttttttacattgaacAGATAATGCCTATAGCTCTTCCATTCTTACAAAGGCTAGTGAAATTACCTTGCAGACTTTTaaagaacacaaataaacaaagataatGCCTTCTTATTTATGATAGAGCTTAGTATTACAGCTTGTGTTCGCAACTATCTACCCAACAAACTGATTCGTATTTATGAgatttaatgttgtttatatGCTTATTGATACTGGACGcgttgtatttttgtaaagcaATTTCTCTGTACCATGTTTGAAATACTAGTTCTATTTGTTCCCTTTTTGTTCTGGTTTGTATTTGTGATGTTTGACTATTCTGTTGAgtcttaataaataattatagtttAAATAA

Function

symbol description
arrb1 Predicted to enable G protein-coupled receptor binding activity. Acts upstream of or within several processes, including endothelial to hematopoietic transition; regulation of microglial cell activation; and regulation of signal transduction. Predicted to be active in several cellular components, including cytoplasmic vesicle; cytosol; and nucleus. Is expressed in neural rod. Orthologous to human ARRB1 (arrestin beta 1).

NR:

description
PREDICTED: beta-arrestin-1

GO:

id name namespace
GO:0035162 embryonic hemopoiesis biological_process
GO:0048368 lateral mesoderm development biological_process
GO:0007165 signal transduction biological_process
GO:0005515 protein binding molecular_function

KEGG:

id description
K04439 ARRB; beta-arrestin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016489 True 5055 mRNA 0.37 15 21861788 21904114

Neighbor

gene id symbol gene type direction distance location
AMCG00016482 NA coding upstream 985312 20872393 ~ 20876476 (+)
AMCG00016478 NA coding upstream 1266863 20581946 ~ 20594925 (+)
AMCG00016474 NA coding upstream 1359599 20499298 ~ 20502189 (+)
AMCG00016475 casr coding upstream 1378792 20478055 ~ 20482996 (+)
AMCG00016468 NA coding upstream 1395498 20448350 ~ 20466290 (+)
AMCG00016493 NA coding downstream 1268 21905382 ~ 21906361 (+)
AMCG00016495 NA coding downstream 30040 21934154 ~ 21935071 (+)
AMCG00016492 NA coding downstream 86292 21990406 ~ 21991423 (+)
AMCG00016491 NA coding downstream 141251 22045365 ~ 22056229 (+)
AMCG00016494 NA coding downstream 242559 22146673 ~ 22157270 (+)
G13799 NA non-coding upstream 1206173 20653670 ~ 20655615 (+)
G13798 NA non-coding upstream 1209516 20646835 ~ 20652272 (+)
G13791 NA non-coding upstream 1244091 20614745 ~ 20617697 (+)
G13700 prdx4,LOC107734341,LOC107665442,LOC107654298,LOC105904605 non-coding upstream 1435946 20424137 ~ 20425842 (+)
G13685 NA non-coding upstream 1458282 20393511 ~ 20403506 (+)
G13873 NA non-coding downstream 18039 21922153 ~ 21922461 (+)
G13892 NA non-coding downstream 332057 22236171 ~ 22236399 (+)
G13894 NA non-coding downstream 425949 22330063 ~ 22330299 (+)
G13902 NA non-coding downstream 574222 22478336 ~ 22478597 (+)
G13928 NA non-coding downstream 1010682 22914796 ~ 22915056 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other upstream 29640 21782106 ~ 21832148 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 1982063 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 3388099 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 4262207 17562418 ~ 17599581 (+)
G13012 NA other upstream 4739856 17116793 ~ 17121932 (+)
AMCG00016502 NA other downstream 1962153 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 2033937 23938051 ~ 23945024 (+)
G14057 NA other downstream 2175903 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 2575592 24479706 ~ 24561807 (+)
G14326 NA other downstream 3103848 25007962 ~ 25010687 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000092_02522204_02531634 ARRB1 coding CI01000092 null 2522123 ~ 2531634 (-)