AMCG00016502


Basic Information

Item Value
gene id AMCG00016502
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23866267 ~ 23882946 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016502
ATGGATGAGCTGTATTTAGAGAATATTGACGAATATGTCCATGACCAGAACAAAATCGTCACCTACAAATGGCTGTCTTTCACTCTGGGGGTACACGTGAACCAGGCGAAGCAAATGCTTTACCACTACTTAGACCAGAAGCGGAAGGAGAGCTCAGCGTCTCGCCTGCATGCCACTTACCTGGTGTCGGGTAAATTCACACAGAATGGAAGCACGaGTCACAAGGTGGCAGTAGTGAGGGAAGATCAGCTTGAAGATGTGAAATCCAAGATGGTCACGCCTGCCAGCGTGCATGTGTACAGTGTGCAGAGAGCAGTGCTGAAGGACAGTGGGCCCCTGTTCAGCACCGATTACGATACTGTCAAAGAGAATCTAAAGAACTGCAGCAAGTACAGTGCCATACAGTGTGCCAATGCGGTTCCCATGTCCTCGGCTGAGATCTTGCGTGTGCAGGCGGCAGCACAAGGGACCCCTCCTGCCTCGGAGGGGCAGCAGGCCGCTAGCAAGCCAGCCCTGAATGGGCACAGTGCTCCTACTTCAAAGCCGGCCAGCCAACAGCCCAAAGGCATCATGGGAATGTTCACAGCCAAAAGCTCCCCCAAGTCCCAGGAAGCAAACACCGAAGTGAAAATGGAAGTCAAGGAAGACACGGGGGCTGCAACATCATCCACTTCCACCGAGAAAACGGAGAAGGTGATCAAGGAAGAAGTGGGTGGGGCTCCTCAGTCTTCAGCAGTGGATGAAAAGCCATCTTCAAGCAGGCCGGACAAGCCAGTTATGGAGATCAAGGAAGAGAAGCCCAAGAGCTCTGGCAATATGGCCAGAAAAAGCAAGGACAGTAAAAGCAAGACAAAGAGACTCGAGGTCTCCGATAGCGAAGATGAGAAATTTGAGAGCCAGAAGAAGAAAAGACGCAGAATAAAGAAGCCGCAGCTGGACAGCAGCGACGATGAGGGTAGCTCTGGTGCGAACTacacaaggcattcaaaaccgATGTTGGAAAGCAAGCAGCCCCCCAAGCAGCTCGCCTGCCTGAAGCCAGCCACAGGcaagaaagaggaggagaagaagagcCAAAAGAAGTCTGCCGCTGCCAGCAACAAAGTGATCAAGCAGGTGTCCATCATGGGATTCTTCCAGAAGAAGTAG
>TU17326
GTCACAGAGAAGAGGTTTGAGAGCGAGTCCTTCTCAGAGAGTGAGGATGATTTGAAGTCCAGCAAGCAGCCCCCCAAGCAGCTCGCCTGCCTGAAGCCAGCCACAGGcaagaaagaggaggagaagaagagcCAAAAGAAGTCTGCCGCTGCCAGCAACAAAGTGATCAAGCAGGTGTCCATCATGGGATTCTTCCAGAAGAAGTAGCTGGGGGAAATGCCAAATCCTCACCTGTTACCTCTGTGAACAAGCATTGAACTAATGGTGACTTGGCTCCATTTCTTCCTCGGCTGGACCCTCCTACAAGGGTCTCTCCTAGAACATTTACACAGCTGTGGTGTTTGACGGTGGATGTAACCGTTTGAGCTGGCATACCCTTTGTTCATGGAAAGGACAAATCCTGATGTGTGGTGAAGATGCACTGAGGCTCCGATGGGATACTTGTCTGtcctgtgtattttgtgtttattctgtgctCTCCCCCAAGCGGTTCCCAATTAACTTCttatttgggatttttttttttttggcaaattgtaaaggtgtttgtttatttttggtgaaACTACACAGATAGGGAACAGCAGCACTTCTTGTTTTGCATAATGTTGGCCTGCACTCTTGATGTGAACACACATATTAAATCAGTTATGAGTTTTGTGATATATTAAGTGAACTTCTTTCAAAGAGCAAGTGGAATTGTGCAAATAGTCTAAGTTCAGAGTCTTTGTTTAtccttaaaaaggaaaaatgggATTGTATTCTAATTATAGAAGAATTCTGAAATCGCTCAGCTAAACTAAATTTGAACTGGGACCCTTATTTGGATTTTGAACTGCGTATAGACTTAGGTGGCATTGCTAAATAGTGTATGCAAATTGCccatttttcttcattctgcCATAACTTTCAGACAAGTCCCTTGACAATGTTAAGTAGGTGAACGACCCAGTGAACGGGAGATAACATCAAGACCACAAGTTATGGCCTATATCAGAGCACTTGCATCACTCAACCGAGGATGAAACtggtaaaatgtgtttttaactaAAACTGAGTATTTTCAGGTATCCTTTACTGCAGCAAGGCCAATTGTTGATAATGATCCTGTGTAGTGAGACAGGTATCAATTATGAATACCCCCTTACAGTTGTTACTCTGCCAGGAAGAATGTGTTTCCCAAAACATGGTAGtttcccttttaaatgttttgttcagaTAGTGGggactgtgtttttaattagtgaCTTGCTTTgccagtaaaataaattaatcataaacAAATTTAATAAGGCAAATTACTGTATGTGTACTTCTGCTGTCTCCACTAAAAAGAGCCTGGTCTTGTGTTCTTCCATCAAATGACAAGCTGTGAGATCTGGCACATAAAGGGTGTTAAAAGCGAAGcgagaaggaaaaaaagcacattgttttgaagaATAGTTGTAAAGAGCATCACATAAGTCAAATTTGTAACACATTGTAAGCAGACCATTTTGATTGCCCAAACCCCCTCTTGCCTCTGCTGTGagaatctgttttttgtttgtggatGGGAGCGTGGGTTTGAGGAGGTGTGGACAGATTCTGTGATTTGTATGTCAATTACGTGTTtgaagtttacattttttttttttgtattgtgtatatatatgtgagtTAAAGACTGCCAGCATGGAAGTCCACGGAGCTCTTTCCACTCTTTACAGGAATAAATTGCGGTGATGTTTTTGGTTTGGGgtggttttctttgtttcccaGCAGGACTTTCTAATCAAGGTCTTAAGGTACCTACTTTTATGAGGAGTGGTTGGAAATGATTCCAGTCTTATTAGGGGGTGGCGGGTGCAGTACTGTTTGCATTATGGATTTACCAGAATTCTCAGAGAATTCTCTTCTCCAACGCTTCCAAATACAGCTGTGACTTCTcgcttcccttttttttttttcttttatagctcaaaatgtgagaaataaaataaatatt
>TU17327
atattacagcaaTACTAAGCTAATGAAGAGCATGGTGCTTGCTTTGCCTTCCAGTCACAGAGAAGAGGTTTGAGAGCGAGTCCTTCTCAGAGAGTGAGGATGATTTGAAGTCCAGCAAGCAGCCCCCCAAGCAGCTCGCCTGCCTGAAGCCAGCCACAGGcaagaaagaggaggagaagaagagcCAAAAGAAGTCTGCCGCTGCCAGCAACAAAGTGATCAAGCAGGTGTCCATCATGGGATTCTTCCAGAAGAAGTAGCTGGGGGAAATGCCAAATCCTCACCTGTTACCTCTGTGAACAAGCATTGAACTAATGGTGACTTGGCTCCATTTCTTCCTCGGCTGGACCCTCCTACAAGGGTCTCTCCTAGAACATTTACACAGCTGTGGTGTTTGACGGTGGATGTAACCGTTTGAGCTGGCATACCCTTTGTTCATGGAAAGGACAAATCCTGATGTGTGGTGAAGATGCACTGAGGCTCCGATGGGATACTTGTCTGtcctgtgtattttgtgtttattctgtgctCTCCCCCAAGCGGTTCCCAATTAACTTCttatttgggatttttttttttttggcaaattgtaaaggtgtttgtttatttttggtgaaACTACACAGATAGGGAACAGCAGCACTTCTTGTTTTGCATAATGTTGGCCTGCACTCTTGATGTGAACACACATATTAAATCAGTTATGAGTTTTGTGATATATTAAGTGAACTTCTTTCAAAGAGCAAGTGGAATTGTGCAAATAGTCTAAGTTCAGAGTCTTTGTTTAtccttaaaaaggaaaaatgggATTGTATTCTAATTATAGAAGAATTCTGAAATCGCTCAGCTAAACTAAATTTGAACTGGGACCCTTATTTGGATTTTGAACTGCGTATAGACTTAGGTGGCATTGCTAAATAGTGTATGCAAATTGCccatttttcttcattctgcCATAACTTTCAGACAAGTCCCTTGACAATGTTAAGTAGGTGAACGACCCAGTGAACGGGAGATAACATCAAGACCACAAGTTATGGCCTATATCAGAGCACTTGCATCACTCAACCGAGGATGAAACtggtaaaatgtgtttttaactaAAACTGAGTATTTTCAGGTATCCTTTACTGCAGCAAGGCCAATTGTTGATAATGATCCTGTGTAGTGAGACAGGTATCAATTATGAATACCCCCTTACAGTTGTTACTCTGCCAGGAAGAATGTGTTTCCCAAAACATGGTAGtttcccttttaaatgttttgttcagaTAGTGGggactgtgtttttaattagtgaCTTGCTTTgccagtaaaataaattaatcataaacAAATTTAATAAGGCAAATTACTGTATGTGTACTTCTGCTGTCTCCACTAAAAAGAGCCTGGTCTTGTGTTCTTCCATCAAATGACAAGCTGTGAGATCTGGCACATAAAGGGTGTTAAAAGCGAAGcgagaaggaaaaaaagcacattgttttgaagaATAGTTGTAAAGAGCATCACATAAGTCAAATTTGTAACACATTGTAAGCAGACCATTTTGATTGCCCAAACCCCCTCTTGCCTCTGCTGTGagaatctgttttttgtttgtggatGGGAGCGTGGGTTTGAGGAGGTGTGGACAGATTCTGTGATTTGTATGTCAATTACGTGTTtgaagtttacattttttttttttgtattgtgtatatatatgtgagtTAAAGACTGCCAGCATGGAAGTCCACGGAGCTCTTTCCACTCTTTACAGGAATAAATTGCGGTGATGTTTTTGGTTTGGGgtggttttctttgtttcccaGCAGGACTTTCTAATCAAGGTCTTAAGGTACCTACTTTTATGAGGAGTGGTTGGAAATGATTCCAGTCTTATTAGGGGGTGGCGGGTGCAGTACTGTTTGCATTATGGATTTACCAGAATTCTCAGAGAATTCTCTTCTCCAACGCTTCCAAATACAGCTGTGACTTCTcgcttcccttttttttttttcttttatagctcaaaatgtgagaaataaaataaatatt

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016502 False 1149 mRNA 0.52 10 23866267 23881166
TU17326 False 1987 lncRNA 0.40 1 23880960 23882946
TU17327 True 2040 lncRNA 0.64 1 23880907 23882946

Neighbor

gene id symbol gene type direction distance location
AMCG00016503 NA coding upstream 50757 23768136 ~ 23815510 (+)
AMCG00016500 NA coding upstream 115135 23728848 ~ 23751132 (+)
AMCG00016501 NA coding upstream 149421 23653394 ~ 23716846 (+)
AMCG00016499 NA coding upstream 881610 22978894 ~ 22984657 (+)
AMCG00016498 NA coding upstream 1198945 22656660 ~ 22667322 (+)
AMCG00016509 NA coding downstream 21058 23904004 ~ 23913433 (+)
AMCG00016507 ccdc58,LOC107733097 coding downstream 42845 23925791 ~ 23934450 (+)
AMCG00016508 NA coding downstream 76358 23959304 ~ 23972841 (+)
AMCG00016516 NA coding downstream 139468 24022414 ~ 24029956 (+)
AMCG00016515 NA coding downstream 190776 24073722 ~ 24077286 (+)
G13979 lipt2 non-coding upstream 467 23862215 ~ 23865800 (+)
G13953 NA non-coding upstream 518555 23347427 ~ 23347712 (+)
G13949 NA non-coding upstream 540507 23325560 ~ 23325760 (+)
G13943 NA non-coding upstream 754102 23111926 ~ 23112165 (+)
G13939 NA non-coding upstream 855398 23010646 ~ 23010869 (+)
G14132 NA non-coding downstream 434854 24317800 ~ 24321319 (+)
G14136 NA non-coding downstream 454024 24336970 ~ 24338848 (+)
G14127 eif1ax,EIF1AX,eif1axb,LOC105905255,LOC106563585,LOC106590461,LOC108411992 non-coding downstream 487380 24370326 ~ 24375827 (+)
G14177 NA non-coding downstream 536412 24419358 ~ 24419607 (+)
G14354 NA non-coding downstream 1239137 25122083 ~ 25122392 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other upstream 2034119 21782106 ~ 21832148 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 3986542 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 5392578 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 6266686 17562418 ~ 17599581 (+)
G13012 NA other upstream 6744335 17116793 ~ 17121932 (+)
AMCG00016506 NA other downstream 55105 23938051 ~ 23945024 (+)
G14057 NA other downstream 197071 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 596760 24479706 ~ 24561807 (+)
G14326 NA other downstream 1125016 25007962 ~ 25010687 (+)
AMCG00016558 rpl21,LOC107591224 other downstream 1197728 25080674 ~ 25085097 (+)

Expression


Co-expression Network