AMCG00016506


Basic Information

Item Value
gene id AMCG00016506
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23938051 ~ 23945024 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016506
catacatttaaaaaagattcAACATGCAATATCTCTGATGAGGTTTATACTTTCTTCACTTGATTGATCACTTTGGAGAAAGTTACAATCGTTACTGCTTTACAGATGtttaaaatttaataaatagatacaatATGTGATGATTGGCAGCAGAGGGCCTCGGAGAGACATCCGGGCTCTGTTTCGTGCGGAGCGCTCGGGTCCGGTAGACATGCGGGTTTCACGGCTCATATCCAACATGGCGCTCATGCTCGTATTGAGGAGGGTGCTGGTGGCGGCTGCTGCGGACGGGCTCAAAGCCAGCGCCGCTTATTGCAACCGCAAACCGGAGAGCCTGTGTGGTTTGAAGACCTCGGCTGCAACACGGGGTGAATCGCACCCCAGAGtgagggagctggaggaggccctgAAAATGCCTGCAGTGGATTTCAAGGCACTGTTCAAGGTGCAGGCCCCCAGGAAGGAAGACGACAACATCGTGTTCCAATGCCAATCAGGACGCAGGAGCCTGATCGCCCTGGACACAGCGGTCGCCCTGGGGTACATGCGGGCGCATCACTACGCAGGGGGGTACAGCGAGTGGTCTCAACGCCAGGACAACTGAGGGCAGACTGCAGCTCCCCTGGGGCACAGTGAGGAGCGGGGGCTGTATCCACTGCAGGAGCTGCCACTGTTGACTCTCAATTCTACCAATCAAGAGGGCATCCAGAGTAAATGTCAGAGGACACTCACTAttgatgttgaaataaaaatacctaACTGatctaacaaattaaaaatagaggCCCTTGGTATTACAGATTCTATCTATACAGTATACTGTGTAGTAGAGAGCTTCTCAATTATTGTAAACTAATTATTCTGCAGAGGAGACTAATGCTGCTACTGTTTGATTTTGCATATATGCCTAATTGTGAAATTTGCTGTcaacaaattagctttttttcaCTTCTTTTGGGAAGTTCTTGTATCTCAAAGAATCTCTTCACCCTTTGCCCTCGCAACCATGACATGAGCGACGGGAAGGGTCTTTGCACAGGGTGGAATCTGCCCCACACTTACTGAGGACATCAACAAGTGAAATAAAGCTCAAcgctgtatttaattaaacggGACGATTAGGGGAAAAAGGGAAGACGTGGTGAAATGTCTATTTCGTGTCATGAAAACCGCTTACATATGACCACACCCTGCGGTCAGCTGAGCAAGTTCTTGTACGAGCTAGAGAGTAGAAGTCAGACCTGCAAAGATGATGTGATGAAGAGGAGAAGCTGCAGGAGCATTGTGAAATTGCGAGGTGTGATCTGGTATTGAGCAGCGCTGCGGTCAGTCTATTACAGCAGCTCGTATCTCACCGTGGCTCTACAGATACAGTGAAAGAGGCAATGACACAACTTCCACAAAATGATACTGTGCTAAAGTGCTGTACagtttattaataaatcaatcttaattgttcaCTCCATTTCCCAATACATGTTCATCAGTCTGCTTCTGCCCCAGCACTAGGTACACAGCCTGCTTTTCGCACTGGTGTGCATATCGCAAGCTACGTCACTGTTTCTGTATCTCAgcaactacaataataataataataataataataataataatcatcctATAATACGTTTTATTTATAACCCGCTCTTCTCATATCCAGAGTGAGAAGTCAAGCAGTCAAAACATGCAACAGCAGTAGCAACAAAAGTATGATTTAAAACTTGCAACTAACAGATCattaaaatcttttttaaagGCGAGTTTTACTAATGCCATTGTAACTGGAGAGGCCGCTTCACAGCCTGTGCGAGTCATCCGCTGTGTGGAGCTGCGGCGGCTGCtggagaaatacatttacatcattgcttacaaataaaaacctaatcgCACACGAACTGCACCTcaccataaaaacacaaaagcagaagCACTGTTCAtcctgtttatttgaaagtgcaaatctttgtaaatcaGTTAAGGTCACATTTGCGCTTCGCAGTTGATGCCACTACAGCATCAGTCCTGCCTGTGAGGATTAGTATGGTAATGgtgttaatatatattgctCACCAAACAGCTCTGGCTTTGCCTGTGTTATACCCGCGCTGTCCGTGCCGGTGGATAAGCAGCTCAATTAAGTCTCATGAATTGTGATCAGGTTGCAGCTCTGATTCAGCTCTGATCCGTTTAGTacacaattgagatcaagaCCAAAATCGGATCCCGGATCCCGTTAGTTTTGTGAAAGTTGCGTTATTGACTGACTACCTGTAGAGCCGCGGTCAGATACGAGCTGCTCGCTGCTCAATACCGGGTCACACCTCGCATCAGCGCCGCCGCATCTGGACCTGCTCCAGTGCCATTTCATGATCCGGAGTGAGCCCGGATCCGATTctgttttctgatcctgttagtacgAGGACTGTAGCCTACTGTGTTGGTTATTCATATGCAACAGGAGtttcagcaaaaataatgtaattataattgtatttccttatatctttaatattagaATAGCTGAAACATTAGTTTAAACGGCACAAACGAAATACATATGTTCGGGCGATTATGTTGTTGCGGGGGGCTGATTGACGTTACTCGtcgaaaataaatacattttaatatcttcaaaaccaaagcagcacaaacgtTTATTTCAACGGCATTAAACGAAATATATGCAATTTATCGTTTGTGCTGTAAGGGGGGGGCAACTTAACAGAGCTAGCTGCAGGTTATCaagattaaacattaatatataactggaatgtctttgtatttttcactcAATAAAATCTACCAatgaagattatatatttttaaaactgagcatgttttgtgattttctCTTTAAATTTGCATATCTATTGGCCTTTctgggtaaaaaaacaaaaaacaaaaaaaaccttggaATTGAATACTTGTTAATTGTCATTTGACAAGGTTGTTTGTGGAGAAGAGTAGCAGTAGCTTTATCAGAGACCAAACCACAGTGTAACAAGGATCAGGTGTTTTTGTGGGGGGTAGGGTGCAGCCTGTTTCTAGTTTCAATTGCATTGGATTTTCAGTGCCAGAAACCTGGTGTTTCCACATGGATAGCATAACAAAACTGGCCCAAATATTTCAGTAGGGGTTTAGCTTCCCATTATTATTgaagagggggggaaaataACTTTCATAAATACATTGGCTGTAACCCTCGCTGGCAGGCAGGTTGCAGACCAGGTTTGGATAAAGGCAATAGCTCGGTGCAGCTTCAGTTTACAAACAAGTTTGCTAATCCGGTCTGCAGACATCCAAGAGTTGGGTATAGCTCCTGTTTGCTTGCTTGAACACAAAAGGTATGTGATGATCTGCTATGATCGGAATGTGATGTCTGCTTCAGAAAATAGTGAACCAAGCTTGTTCTGTCACACCTCACACCAATATCAGATGATTGATTGTGACAGATTAGATACTTTCAGATTCCAACAAGTACATGGTCTGCCCTCCCAATCTGTATGACCATG
>TU17335
CTGGAGAGGCCGCTTCACAGCCTGTGCGAGTCATCCGCTGTGTGGAGCTGCGGCGGCTGCtggagaaatacatttacatcattgcttacaaataaaaacctaatcgCACACGAACTGCACCTcaccataaaaacacaaaagcagaagCACTGTTCAtcctgtttatttgaaagtgcaaatctttgtaaatcaGTTAAGGTCACATTTGCGCTTCGCAGTTGATGCCACTACAGCATCAGTCCTGCCTGTGAGGATTAGTATGGTAATGgtgttaatatatattgctCACCAAACAGCTCTGGCTTTGCCTGTGTTATACCCGCGCTGTCCGTGCCGGTGGATAAGCAGCTCAATTAAGTCTCATGAATTGTGATCAGGTTGCAGCTCTGATTCAGCTCTGATCCGTTTAGTacacaattgagatcaagaCCAAAATCGGATCCCGGATCCCGTTAGTTTTGTGAAAGTTGCGTTATTGACTGACTACCTGTAGAGCCGCGGTCAGATACGAGCTGCTGTAATAGAGACTCACCGCAGCGCTGCTCAATACCGGGTCACACCTCGCATCAGCGCCGCCGCATCTGGACCTGCTCCAGTGCCATTTCATGATCCGGAGTGAGCCCGGATCCGATTctgttttctgatcctgttagtacgAGGACTGTAGCCTACTGTGTTGGTTATTCATATGCAACAGGAGtttcagcaaaaataatgtaattataattgtatttccttatatctttaatattagaATAGCTGAAACATTAGTTTAAACGGCACAAACGAAATACATATGTTCGGGCGATTATGTTGTTGCGGGGGGCTGATTGACGTTACTCGtcgaaaataaatacattttaatatcttcaaaaccaaagcagcacaaacgtTTATTTCAACGGCATTAAACGAAATATATGCAATTTATCGTTTGTGCTGTAAGGGGGGGGCAACTTAACAGAGCTAGCTGCAGGTTATCaagattaaacattaatatataactggaatgtctttgtatttttcactcAATAAAATCTACCAatgaagattatatatttttaaaactgagcatgttttgtgattttctCTTTAAATTTGCATATCTATTGGCCTTTctgggtaaaaaaacaaaaaacaaaaaaaaccttggaATTGAATACTTGTTAATTGTCATTTGACAAGGTTGTTTGTGGAGAAGAGTAGCAGTAGCTTTATCAGAGACCAAACCACAGTGTAACAAGGATCAGGTGTTTTTGTGGGGGGTAGGGTGCAGCCTGTTTCTAGTTTCAATTGCATTGGATTTTCAGTGCCAGAAACCTGGTGTTTCCACATGGATAGCATAACAAAACTGGCCCAAATATTTCAGTAGGGGTTTAGCTTCCCATTATTATTgaagagggggggaaaataACTTTCATAAATACATTGGCTGTAACCCTCGCTGGCAGGCAGGTTGCAGACCAGGTTTGGATAAAGGCAATAGCTC

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016506 True 3512 mRNA 0.43 4 23938051 23945024
TU17335 False 1489 lncRNA 0.47 1 23943274 23944762

Neighbor

gene id symbol gene type direction distance location
AMCG00016507 ccdc58,LOC107733097 coding upstream 3601 23925791 ~ 23934450 (+)
AMCG00016509 NA coding upstream 24618 23904004 ~ 23913433 (+)
AMCG00016503 NA coding upstream 122541 23768136 ~ 23815510 (+)
AMCG00016500 NA coding upstream 186919 23728848 ~ 23751132 (+)
AMCG00016501 NA coding upstream 221205 23653394 ~ 23716846 (+)
AMCG00016508 NA coding downstream 14280 23959304 ~ 23972841 (+)
AMCG00016516 NA coding downstream 77390 24022414 ~ 24029956 (+)
AMCG00016515 NA coding downstream 128698 24073722 ~ 24077286 (+)
AMCG00016520 naa50,LOC107732992,LOC106590472,LOC106579447 coding downstream 144806 24089830 ~ 24101565 (+)
AMCG00016519 NA coding downstream 159881 24104905 ~ 24118373 (+)
G13979 lipt2 non-coding upstream 72251 23862215 ~ 23865800 (+)
G13953 NA non-coding upstream 590339 23347427 ~ 23347712 (+)
G13949 NA non-coding upstream 612291 23325560 ~ 23325760 (+)
G13943 NA non-coding upstream 825886 23111926 ~ 23112165 (+)
G13939 NA non-coding upstream 927182 23010646 ~ 23010869 (+)
G14132 NA non-coding downstream 372776 24317800 ~ 24321319 (+)
G14136 NA non-coding downstream 391946 24336970 ~ 24338848 (+)
G14127 eif1ax,EIF1AX,eif1axb,LOC105905255,LOC106563585,LOC106590461,LOC108411992 non-coding downstream 425302 24370326 ~ 24375827 (+)
G14177 NA non-coding downstream 474334 24419358 ~ 24419607 (+)
G14354 NA non-coding downstream 1177059 25122083 ~ 25122392 (+)
AMCG00016502 NA other upstream 55105 23866267 ~ 23882946 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other upstream 2105903 21782106 ~ 21832148 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 4058326 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 5464362 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 6338470 17562418 ~ 17599581 (+)
G14057 NA other downstream 134993 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 534682 24479706 ~ 24561807 (+)
G14326 NA other downstream 1062938 25007962 ~ 25010687 (+)
AMCG00016558 rpl21,LOC107591224 other downstream 1135650 25080674 ~ 25085097 (+)
G14361 NA other downstream 1188174 25133198 ~ 25133879 (+)

Expression


Co-expression Network