AMCG00016507 (ccdc58,LOC107733097)


Basic Information

Item Value
gene id AMCG00016507
gene name ccdc58,LOC107733097
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23925791 ~ 23934450 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016507
ATGAACTGAACCAATCACAGCAGTCCCGCTCTGCCGCGCAGGTACAAAGTCAAAATAAGGCTTTGTTATGGACAGTCTTTCACTGCACTTCTAACAACTAGGACCCTTCTGTCCATCATGGCGGCGCCCACGGGGAACCTGAACTGTAAGGACTTCTCAATGTTTCAGGAAGCCCTTAAGGTGATGCGCACTATAGATGACAGGATAGTCCATGAACTGAACGCCACTATCCCCACAGTGTCCTTCAGTGGGAAAGTGGATGCCACGCAGACGTGTAAAAAGCTATATGAATCTTTGCTGGAAGCCCACCTCAGCAGAGACAGAGCCATTAAAACCTGTATAGCCCAGACCTCCAGCGTGGTCAGCCAGCTGCGGGAGGAAAGGGCGAAGGACATAGACAACCTGACACTAATTAAGGAACTCAGGAAAGAGCAGACCAagctGAAGCTCATGCAGTCTGAATTAAATGTGGAAGAAGTGGTCAATGACAGAAGTCTGAAGGTGTTTAACGAGAGGTGTCGAATCCACTACTCGCCCCCAAAGACCCACTGACTCCCACTCTGAGGCAGCTAGCACAGCGTCTGCAACGGATCTGGAAACGTGGTGGCAACTGCACAGAGGACCACTCGCACCTGGCACACAGGTGCCTCCTCGCCAGCGCCAACAGAGGAGTCTCGCCACCTCGATCTGTTAGTCTCAAAGAAAAACTTCTCCATTCTCTGTGATTTAcctgtttatgtttttctttacaaacaatgtataaaaaaatagttttataacaATGAAA

Function

symbol description
ccdc58 Located in mitochondrion. Orthologous to human MIX23 (mitochondrial matrix import factor 23).

NR:

description
PREDICTED: coiled-coil domain-containing protein 58

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016507 True 787 mRNA 0.49 6 23925791 23934450

Neighbor

gene id symbol gene type direction distance location
AMCG00016509 NA coding upstream 12358 23904004 ~ 23913433 (+)
AMCG00016503 NA coding upstream 110281 23768136 ~ 23815510 (+)
AMCG00016500 NA coding upstream 174659 23728848 ~ 23751132 (+)
AMCG00016501 NA coding upstream 208945 23653394 ~ 23716846 (+)
AMCG00016499 NA coding upstream 941134 22978894 ~ 22984657 (+)
AMCG00016508 NA coding downstream 24854 23959304 ~ 23972841 (+)
AMCG00016516 NA coding downstream 87964 24022414 ~ 24029956 (+)
AMCG00016515 NA coding downstream 139272 24073722 ~ 24077286 (+)
AMCG00016520 naa50,LOC107732992,LOC106590472,LOC106579447 coding downstream 155380 24089830 ~ 24101565 (+)
AMCG00016519 NA coding downstream 170455 24104905 ~ 24118373 (+)
G13979 lipt2 non-coding upstream 59991 23862215 ~ 23865800 (+)
G13953 NA non-coding upstream 578079 23347427 ~ 23347712 (+)
G13949 NA non-coding upstream 600031 23325560 ~ 23325760 (+)
G13943 NA non-coding upstream 813626 23111926 ~ 23112165 (+)
G13939 NA non-coding upstream 914922 23010646 ~ 23010869 (+)
G14132 NA non-coding downstream 383350 24317800 ~ 24321319 (+)
G14136 NA non-coding downstream 402520 24336970 ~ 24338848 (+)
G14127 eif1ax,EIF1AX,eif1axb,LOC105905255,LOC106563585,LOC106590461,LOC108411992 non-coding downstream 435876 24370326 ~ 24375827 (+)
G14177 NA non-coding downstream 484908 24419358 ~ 24419607 (+)
G14354 NA non-coding downstream 1187633 25122083 ~ 25122392 (+)
AMCG00016502 NA other upstream 42845 23866267 ~ 23882946 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other upstream 2093643 21782106 ~ 21832148 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 4046066 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 5452102 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 6326210 17562418 ~ 17599581 (+)
AMCG00016506 NA other downstream 3601 23938051 ~ 23945024 (+)
G14057 NA other downstream 145567 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 545256 24479706 ~ 24561807 (+)
G14326 NA other downstream 1073512 25007962 ~ 25010687 (+)
AMCG00016558 rpl21,LOC107591224 other downstream 1146224 25080674 ~ 25085097 (+)

Expression


Co-expression Network