AMCG00016509


Basic Information

Item Value
gene id AMCG00016509
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23904004 ~ 23913433 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016509
CTGCCACACGGGGCGGAGTCTGCTTTCAAAATTACAGGCTGGGAGAGACGCGAAAAACAAAGATGGCGGCGCTGAGCTCCGCCAAGTCCTCCAGTGGACTGAGGCCCAGAGAAAGGGCCCAGAGAAGCAAAGCCAGGCCGGCGGAGGCCGCTAAGGAAGCGGCGGCGACTGCGCGGCTCTTAACGCTCGAGGAGGCCCGCTGTCCGGTGTGCTTGGAGATTTTCCTGGAGCCGGTAACGATGCCCTGCCGGCACTCGGTGTGTCTCCCGTGCTTCAAGCGGACCGTGGAGCTGTCCAGCCTGTGCTGTCCGCTCTGCCGGCTGCGGGTGTCCAGCTGGGCCCGCCGGCAGGCCCGGGAGAACCGCCTCGTCAACACGGAGCTGTGGGAGATGGTGCTGCGGAGCCACCCGGAGCGCTGCCAGCGCAGGATGGAGACGAGGGAGGGAGAGGCCGGGGAGAACGaaatAATATTCCGATCCCCTGTACAGCTCAGTAAGCCAGGTGAAATACGGCAGGAGTATGAGAAGCAAATGAAAAAGCTGGAAGAGGAAAAGCAAGTAGGGGAAAAGGCTTCAGAGGAGCTGATACACAAGATCTTAGAGGATGATCGGAGACAGTTTGAGAATCAGAGGAAGAAAACGTGTTTGCAGAGAACGGACGAGCAAGAGCCAGTGGCGGTGGGCATCGAGAACaatgagagaaacaaaatgcagccCAATCAGAAAAAGGAGGACTGCGCAATGCTGAAGCCTTTTGTCTTGCTGTTATCGGACACCGAGGatgaggagaagaagaaagtgAGGCTGCAGCGCAGGCGGGAGGGTCTGGGGCCTCTGCACCTCACACAGGAGCCTGTAGTTCTGGTGTTGTCGGACTCGGAGAACGAGGAGCCGATCGGGGGAAGGACGAGGCACTTGTCTGCATTTGTTAGAAGAACCAGGAGTTCAGCAGCCTGCAGCAAAAGAGCGCAGAACCATGTGGTGCAGAGGAGCCGgagctgcacagacacagaagaaGGCAGAGGGAAGGGTGGCTGTCCTTCACGAGTGGCTGCTATGGCCAAGACTAATGTAGCGCACAGTTCCAACGCCGGGATCCTACTGTCCTCGGAAAACAGCCGCTCGTTCTCCGCGCCCATCCTGATTCCCGACCGGAGGCAGAGCAGCCGTCTGGGAGTGGGGGGTGTCCTGCCTGCCCTTGGTACTCCATCAGCCAAGCAGGAGCGATCAATCAGCCCTGAGAGCAATGACAGCATCTCGGAGGAGCTGAACCACTTCAAGCCCATCGTGTGCTCGCCCTGCACGCCACCCAAGAGGCTGCCGGACGGGAGGGTGCTGGAGCCCACCATCGTCAAGTCCACGCCGCGCAACCTCAGCCACAGCTTGCAGAAGCCCACCAGCTACGAGGCCAGCCCCACCATCCTGCAGAAGTGGAAGCAGATCGAGATGGACCGGCTGAGCACCAAGGTGGCAGCATCGTCCAAGGGCACCATCACCAGCTCCCTGCCTGAGGATTTCCCCCTGGCTAGGCCAAACCCAGCAGAGGGGAAGCAGAGCAAGTCGTGTCAAGTGGCTGCCCTGGAGACGAAATCCGTTCAAGACTGCCGCTGCCCTGCTGCTGCCCAGGCCCAGGCCCAGGAGAAGGGCAAAGCCTTGGCTAGCAACAAGCGCAGGCTGATTTTCGAAGACTCCAGCAGTGGGGATCGACCAGCAAGAGCCCAGACCCTCGTCGTGGCCCAGCCCTGCGGGGCTGTGGCAGCGCGAGCCGAGGCAGGGGGTGCGGGGAAAACAGCACCGAGCACAGCGAGCGGGCGCGAGAGAAATTCACAAGAGAAGAAAAGCAAGGAATCCAAGCCCTGCCCCCCCAAGCCAGCTGAACCACAAGAGTCCAACAGCAGCGGCGTGGTGAAAAGCAGACCTACCTCAAGGAGGGGCATGAAGAGGAGCCAGAAGACAAAACACTTGGAAGAGCCCGGACGGACCTTGAAAAAGCCAAGGCCCTCCAGCCGGGACGACGGCCCGCCCGACTCTGACTTGAACTGCCTGGATGGACAGCGGCAgcggcaggaggaggaggaccgCAGACTGGCATTGAGGCTGCAGAGGCAGTTTGATATGGAGAGGCAGAGGGTGGACAGGCGCAAGGGCACCCCTGACAAGTACCTACTGCGGTCCTGGGCCTCCCTGGAAGCCCGGTTGGAGCACAGCCCACGCAGATCGGGACGCGTCTCCAGGAGGAAATGA

Function

GO: NA

KEGG:

id description
K20805 RNF169; E3 ubiquitin-protein ligase RNF169

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016509 True 2243 mRNA 0.61 9 23904004 23913433

Neighbor

gene id symbol gene type direction distance location
AMCG00016503 NA coding upstream 88494 23768136 ~ 23815510 (+)
AMCG00016500 NA coding upstream 152872 23728848 ~ 23751132 (+)
AMCG00016501 NA coding upstream 187158 23653394 ~ 23716846 (+)
AMCG00016499 NA coding upstream 919347 22978894 ~ 22984657 (+)
AMCG00016498 NA coding upstream 1236682 22656660 ~ 22667322 (+)
AMCG00016507 ccdc58,LOC107733097 coding downstream 12358 23925791 ~ 23934450 (+)
AMCG00016508 NA coding downstream 45871 23959304 ~ 23972841 (+)
AMCG00016516 NA coding downstream 108981 24022414 ~ 24029956 (+)
AMCG00016515 NA coding downstream 160289 24073722 ~ 24077286 (+)
AMCG00016520 naa50,LOC107732992,LOC106590472,LOC106579447 coding downstream 176397 24089830 ~ 24101565 (+)
G13979 lipt2 non-coding upstream 38204 23862215 ~ 23865800 (+)
G13953 NA non-coding upstream 556292 23347427 ~ 23347712 (+)
G13949 NA non-coding upstream 578244 23325560 ~ 23325760 (+)
G13943 NA non-coding upstream 791839 23111926 ~ 23112165 (+)
G13939 NA non-coding upstream 893135 23010646 ~ 23010869 (+)
G14132 NA non-coding downstream 404367 24317800 ~ 24321319 (+)
G14136 NA non-coding downstream 423537 24336970 ~ 24338848 (+)
G14127 eif1ax,EIF1AX,eif1axb,LOC105905255,LOC106563585,LOC106590461,LOC108411992 non-coding downstream 456893 24370326 ~ 24375827 (+)
G14177 NA non-coding downstream 505925 24419358 ~ 24419607 (+)
G14354 NA non-coding downstream 1208650 25122083 ~ 25122392 (+)
AMCG00016502 NA other upstream 21058 23866267 ~ 23882946 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other upstream 2071856 21782106 ~ 21832148 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 4024279 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 5430315 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 6304423 17562418 ~ 17599581 (+)
AMCG00016506 NA other downstream 24618 23938051 ~ 23945024 (+)
G14057 NA other downstream 166584 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 566273 24479706 ~ 24561807 (+)
G14326 NA other downstream 1094529 25007962 ~ 25010687 (+)
AMCG00016558 rpl21,LOC107591224 other downstream 1167241 25080674 ~ 25085097 (+)

Expression


Co-expression Network