AMCG00016510


Basic Information

Item Value
gene id AMCG00016510
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23916943 ~ 23925716 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016510
CCGAACTACAACTCCCAATGCGCATGTCACTGCGGCGCTGCTAGGATACAGCATTCCTCCGAGGAAAAATTGGAGATGTGTTCAGCTATTTCACACAGTTTCTCTCCCCGCAAAGAGCACCCTCTGCGTGGATAAACACCGATTAAAACCGCAAAGAGCACCGTCGCAAACAAGCCAGGGGCATTCTGTACACAAGGGTTGATCTGTCACTCACACTTCAGGGAGTCAGTCCCGGGATGTGACCCTGTGCTGCGACCATGGGCACAGATGGGCTGTACAAACTGGACGATGGAGACACCTTTCCGACCAATTGCTTTCCAGTCAGGTCCTTTTTCCGGCAAAGCGAAGAGGGCGGAGGGCACTGGCTGGTGGTACACAGAGTCGTGGACCATGAGAGGTACAGGGTCACGCAGCCCGAGCGTCCGGCCGGCTCACAGTGCCGTGAGCAAGGCCGGTCTGTCCCATCTCGCACCGGACAGCGACAGGGAAAGAGCAAACGAGGCTCTGTGAACAATGTCTTAGATGGGAATTATTTAATGAAAGTGCATTGTGTGGAGAAGCCGTCCGAGCTGTGCTCCGTGGATGTCAGCGACAGAAACCTGCACTTGGCCAAGGAGGAGGATTTTGAAGCGTTCAACAATGTTGCTTATATGAACGCATCCAGCAACCTGCTTACCTTAGAGCCCTTCAGAAAATTTCCCATAATCAGAGAGCTGGAGTTAGCGGGGAATGGCCTGCACAGGCTGCAAATCAATGACGGAGACTTTCCACATCTGGAGGTGCTGGACCTCTCTTACAACAGCCTGTCCAGCCAGGAAGTCCTGTCCCTGGGTCTGCTGCCCTGCCTCAGAGTCCTGCACCTCACTGGTAACGGACTGCAGGCACTGCCACTCAACATGGCCCAGCCATACCAGGCCCCCACACAGCTGGCGTCCAACCACGGCCTCCGGTTCTACAGCTTGGAGATCTTGATATTAGATGACAACAAACTCTCTTCTCCGGGGATATTCACCAGCCTGGCTAATCTGAAAAGGCTGAAGCATCTAAACCTGGACCGCAACGGCATCACCCAGGTGCCTTACTTGCATCAGATCGGGGATTCTGCACAGGATGCCCAGCTTCCAGATTTGAACATGCAGTTTGGGGTCAAAGGGCACGATGAGGCTGTGGGAGGCGGGACATCCCCCAGCATGGGTCTGGACAGAGGTGGTGGCACATGCTCAGCAACTGCAGCATCAGAAGGGGCAACTGTGGAGAGAACAGGCTACTCTCAATGCAAAAAGGAGTGTAGTGTTCAGGAGGAGCCATGGCTGACTGCTGGTGTCCCTCGCACTGAGACCCAGAGGGAAGACCCTGCAGAATTCCAGTTACCCCTTCCGGAGCTTCAGTTTCTAAGCCTGGCTGACAATAAGATATCAGAGGAAGAGGCCCTGCTGGCAGTGGCTCTGTTCCCCTCCCTCAGCGAGCTGGTGATTCACAGTAACCCTCTCACCACACAAAAGAGTGGCGACCCTCCGTTGCTAACCGGTTTCCTCCAGAACAGACTGGGcattaaaatacagagaaaaaagaCAGTGGGACCAGCGAAGCCACCTCTCGTGCTTCCAGTGAACCCCAAACGAAAGGTGAAAACCAGAATCCCAAAGATCCCTAAGAAGTCCCTGTGCTTGGAGGATTCTCTCGGCTCTTTGCCCTTAAGCGAGAGACCAGCGGACACCTGGAAGAGCCACATGCAGTACAAACCTCTGCCACCAATCCAGTCATTGTCCCAGGTTAACAGTGAAGAGAGTCAGCAGGCAGAAGCTGTAGCCTGGGTTCAGGGTGAGGCCGTCCACGAAGAGGCAACCAGACACGAACCAGAGGAACACGAAAAGGAAGACAATGGGGCTGCATTCTTTATGACACAGGTGAATGAACCAGAATCAGACGCTGGCTGGCATACAAGTCTGCAAGAGAGTGAGGAAACTCACAGAAAAACTCAAAGACCGAAGGAAGATTCAGTTCCAGATAAATTCAGAGGATATGAAATACTACTGGATGCAAAGCCTGATCCGGATATGATTGAGCCTACTGGAATTCAGCAGAACGTCAGAGCTCTGGAATACACACTTCAGAACCTCCTTGTGTTCAGGGATTCCAGGGCTAGACTTGACTGTCCCCAGAAACCGTACGTGCAAAAGGAGAAGAagCTAGGGAAACTGCCACCCCCAAAACCGAGAAAATCGAAAGGGGACAAAGTGGCAGAATTCCTTGTCAAGATTAAGGACACGAAACCAATCAGTGAAGCCCCGTTAGCTAATGTTCTTCAGAACAAAGAGGTGAGCAGGACAGAATATGAGGAGGCTCGTGCCCTGCTGAGGGAAATGAAGAGGCAGTACAGGGTTGCCCAGAGCAAGGTGATGGACCAAGCAGCCCAGATTGAGAGAGACACGCTGGGTGATCTTGAGGAGAAAAGAGGAGGAAAATAACACtcttgaaataaatcaaacctaGACctggtgttatttttttttcttcatctaaTGATCTTACATGTG

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016510 True 2537 mRNA 0.52 18 23916943 23925716

Neighbor

gene id symbol gene type direction distance location
AMCG00016512 NA coding downstream 14138 23893423 ~ 23902805 (-)
AMCG00016497 NA coding downstream 1831601 22077617 ~ 22085342 (-)
AMCG00016487 NA coding downstream 1896212 22017124 ~ 22020731 (-)
AMCG00016488 NA coding downstream 1964750 21949268 ~ 21952193 (-)
AMCG00016486 NA coding downstream 1995304 21910870 ~ 21921639 (-)
AMCG00016514 NA coding upstream 2175 23927891 ~ 23931580 (-)
AMCG00016513 NA coding upstream 9187 23934903 ~ 23937234 (-)
AMCG00016511 NA coding upstream 19478 23945194 ~ 23951329 (-)
AMCG00016518 NA coding upstream 82172 24007888 ~ 24020791 (-)
AMCG00016517 NA coding upstream 103674 24029390 ~ 24039800 (-)
G13990 NA non-coding downstream 33984 23880959 ~ 23882959 (-)
G13957 NA non-coding downstream 558129 23358371 ~ 23358814 (-)
G13956 NA non-coding downstream 559251 23357461 ~ 23357692 (-)
G13954 NA non-coding downstream 569231 23347440 ~ 23347712 (-)
G13952 NA non-coding downstream 569592 23347006 ~ 23347351 (-)
G14012 NA non-coding upstream 7293 23933009 ~ 23933843 (-)
G14013 NA non-coding upstream 8450 23934166 ~ 23934467 (-)
G14015 NA non-coding upstream 15602 23941318 ~ 23941538 (-)
G14016 NA non-coding upstream 16328 23942044 ~ 23943378 (-)
G14092 NA non-coding upstream 221683 24147399 ~ 24147677 (-)
AMCG00016505 NA other downstream 31685 23864581 ~ 23885258 (-)
AMCG00016504 NA other downstream 54204 23841062 ~ 23862739 (-)
G13969 NA other downstream 216688 23699149 ~ 23700255 (-)
G13962 NA other downstream 461132 23455092 ~ 23455811 (-)
AMCG00016480 NA other downstream 3233919 20666142 ~ 20683024 (-)
AMCG00016531 NA other upstream 383540 24309256 ~ 24323458 (-)
AMCG00016538 smpx,LOC107721880,LOC107590224,LOC107663668,LOC107705278 other upstream 627976 24553692 ~ 24566956 (-)
G14305 NA other upstream 955432 24881148 ~ 24882098 (-)
AMCG00016562 rnf6 other upstream 1082258 25007974 ~ 25015343 (-)
G14392 NA other upstream 1154852 25080568 ~ 25083699 (-)

Expression


Co-expression Network