AMCG00016512


Basic Information

Item Value
gene id AMCG00016512
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23893423 ~ 23902805 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016512
aataataataataataataataataatcaagcgTCAAGACTGGGATCATTAAGGTAAACGGCAGTTCTGATCTACCCCTGTAGGGGGCATTCGTCTTCAATAGAACTCTACAGTGGGTCTGTGATTTGATGCGGAGTTTCTCACTGGTTTTGCGGTATTTTGCTGTCGCCTTTCAGCCCTTCAGGATATTTGTAGTCATTGGCAACGTTTAtagctgtatttgtatttatttctgggaGGAATCGTCTCAGACATGAAGCACTTTTTCATCTCTGTGAGTCTGGCGTTGTACAATATTCTTGATGCAGAAGCAGTCAGGGCCAACAAAATCTCTGGCACATTTtgcactttcaaagaaaagagaTACAATCCAGGAGACACCTGGCATCCCTATCTGGAGCCTTATGGATTGATGTTCTGCATGCGTTGCACATGCACTGAGACCGGCCATGTGAACTGTAACACTATAAAGTGCCCCGTCCTCAGATGTGAGAATCCAGTGACTGACTCTCAGCAGTGCTGCCCCAGGTGTGCAGTGGAGCCCAGGAGCCCAGCAGGCCTGAGGGCCCCTGTGAAATCCTGCCAGTACAACGGGAGCCTCTACCAGCCTGGCGAGACCTTCTCCAATGACGAGCTCTTTCCTTCCCGCCAGCCCAATCAGTGTGTGATGTGTAGCTGCTCGaACGGGAACATCTTCTGTGCTCTGAAGACTTGTTTGAAGCTTACCTGCACATCTCCTGTGTTCCTACCAGACACCTGCTGTCCAGTGTGCACAGATGCTGCTGTGAATGCCAACTCGGCCTCCACTGAGGATGGCGGGCAGCAGCTTAACCGAGGCGTAAGGCATTCACAGGACCAGTGTTCCCAGGAGCTTGTGAAAGGCAGAGCATTGCGTGCCACACCGGCCACAGCGAGGAGCGCAGCCCGGGGCATCAACCTGCAGGGCTTCAGGCACAGAGGGGCCGCAGGGACCACAGTGAAGATCGTGCTGCAGAAGAAACACAAGAGAGCCTGTGTGTACAATGGGAAGACCTACTCCCACGGCGATGTGTGGCACCCAGTGCTGGGCAGGGTGCTGGAATGTATCCTGTGCACGTGCAGGGATGGTGTGCAGGAGTGCCAGCGCATCACCTGTCCCAGCCAGTACCCCTGCCAGCACCCCAAGAAGACCGAAGGACAGTGCTGCAAAAGATGCCCAGAACTGAATGAAGAATCCAGTAGCACCCAGTGCCACCAGGGAAAGGGCAACAGCGACCTCGTGCTGTATAAAGTGGAGTCTGGCAGCGACACCGCCGTCAGGAAAATCGCTGTAGACAGAGAAGGGGCAGTGGAGATTGAGGTTCATGTGTGGAAAACAGTAGAAGGGGTGCTGCACTTAATGGACACAGAGAAGCTGCCCAGGAAAGAAGTCACAGAGCACCCGGGGAACTTCGTCTTCCTGACCCGACTGGACGAGGagaaCTGGAGAAAGTTCAAGGAGACAGAAGGCCAAAGAACGGGATTCACAGAAAGCAGAACATGTGATGGCGGCATTATGGAGGTGGTGAAGTTTTTGAATCCAGAGCAGTCACACAGTCTGTGTGCCTCCTAAATCTCTTCAAGGGACTGCACCCCTGGTAACTTGAGAAGCACTTCCTGGAGTCAATCAGCTGGTCAGAAACCTCTGTGCAGCAGAGACCTGTTGCACATCGACCCTTTATTTCATGAGGCAgtctttataaaaacaaaacacagcatctTTAAGCACTTTAGTAAAGTATGAGGAGatgctgaataaaaaaatgtagacaTCAAAATTATATGAAgatttacttttcttctttttctttttttattgttcatattattaatattattatttgttgctTGGAACTCCAGAAGGATAATATGTAAAGTGTTGTACCGAGAGTCCATTACAGATGTAAGATGCGCTATTTCAATCCCTCAGACCCTCCCTGTGTAGTCGGTGTGGATTTTTAAGATCAGAGCCTCTTTcggacaaaaacaaatgcttgtcAGGTGAAGTGATAGTTTATTCTCTGCGTTCGTAGGctgttgtgattttaatggtGTGTTAAGATACTGTCCAACTGGCAGTGAGATGCCTCATATATAATGGAGAATAGAAAGAGCACGGCTAAGATGTTAGGTTTCCTGGAGCCAGGAAATGTAAGACTAAGGAAACTCTGACCAGAATATGGTTAACAGTCTCCCAGCAGGACACTTAACAGATAGAGAGCTGATAGAGAGGTCGTAATATGTACCTTCTGCTTCCCTTTCATGAACtccaaatgcattaaaacaatgacATGATGTGCACAAGCCATATATATATNNNNNNNNNNatatatatatatatcatggaTTGAGGACCATTATTGTGAATACAAAACAGTGTAATACT

Function

GO:

id name namespace
GO:0009953 dorsal/ventral pattern formation biological_process

KEGG:

id description
K17280 CHRDL2; chordin-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016512 True 2404 mRNA 0.47 11 23893423 23902805

Neighbor

gene id symbol gene type direction distance location
AMCG00016497 NA coding downstream 1808081 22077617 ~ 22085342 (-)
AMCG00016487 NA coding downstream 1872692 22017124 ~ 22020731 (-)
AMCG00016488 NA coding downstream 1941230 21949268 ~ 21952193 (-)
AMCG00016486 NA coding downstream 1971784 21910870 ~ 21921639 (-)
AMCG00016485 igsf11 coding downstream 2183734 21688811 ~ 21709689 (-)
AMCG00016510 NA coding upstream 14138 23916943 ~ 23925716 (-)
AMCG00016514 NA coding upstream 25086 23927891 ~ 23931580 (-)
AMCG00016513 NA coding upstream 32098 23934903 ~ 23937234 (-)
AMCG00016511 NA coding upstream 42389 23945194 ~ 23951329 (-)
AMCG00016518 NA coding upstream 105083 24007888 ~ 24020791 (-)
G13990 NA non-coding downstream 10464 23880959 ~ 23882959 (-)
G13957 NA non-coding downstream 534609 23358371 ~ 23358814 (-)
G13956 NA non-coding downstream 535731 23357461 ~ 23357692 (-)
G13954 NA non-coding downstream 545711 23347440 ~ 23347712 (-)
G13952 NA non-coding downstream 546072 23347006 ~ 23347351 (-)
G14012 NA non-coding upstream 30204 23933009 ~ 23933843 (-)
G14013 NA non-coding upstream 31361 23934166 ~ 23934467 (-)
G14015 NA non-coding upstream 38513 23941318 ~ 23941538 (-)
G14016 NA non-coding upstream 39239 23942044 ~ 23943378 (-)
G14092 NA non-coding upstream 244594 24147399 ~ 24147677 (-)
AMCG00016505 NA other downstream 8165 23864581 ~ 23885258 (-)
AMCG00016504 NA other downstream 30684 23841062 ~ 23862739 (-)
G13969 NA other downstream 193168 23699149 ~ 23700255 (-)
G13962 NA other downstream 437612 23455092 ~ 23455811 (-)
AMCG00016480 NA other downstream 3210399 20666142 ~ 20683024 (-)
AMCG00016531 NA other upstream 406451 24309256 ~ 24323458 (-)
AMCG00016538 smpx,LOC107721880,LOC107590224,LOC107663668,LOC107705278 other upstream 650887 24553692 ~ 24566956 (-)
G14305 NA other upstream 978343 24881148 ~ 24882098 (-)
AMCG00016562 rnf6 other upstream 1105169 25007974 ~ 25015343 (-)
G14392 NA other upstream 1177763 25080568 ~ 25083699 (-)

Expression


Co-expression Network