AMCG00016518


Basic Information

Item Value
gene id AMCG00016518
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24007888 ~ 24020791 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016518
GCGACACATTGCTTTTTATTGCTTACATTTCGATTATATCTTTTAAATTTGGATGATTACTTTTGTAATTTgcgttgtgtttttaaattattttgctgCTGGTCGCTGTACGGTTTGAACATCACTTCAGCACGAACAGCGAGGCACGGCCACAACGCTGCACTTCAACACGCTCAGTGGTGCACACCGCCGCCACTGATGATGACGTACACGGAGGGCTGTGATTGGTCGTGCGCTCATAACAGTGCGACGGTGTAGTTCTCCCGTGAGAATAGGACTACCCCGCTGCTCTCTGTCCAGGATGAAGCTAGAGCTGTCCCGTGTGGTGCAGGGTTGCAGACTGGGGGTCCTGAGTGGCCTGGGCAGGCAGGCCGATCGCAGCCTGCAGATCCCCGGCTGCCTGCTGTACACGCGCTGCGGCTCAGTACCCCACCTCACCCACGAGACGCTGAGCACTGTGGACAGCATGCCCACCGTTACCCAGCTCACACTGCCCACTCTGGCAGAACACCAGGAAGTGCTGGAGGAGTTTAAAGAAGGAGCTAGGAAGTTTACAGGCCTGCatgacactgtgctgtactgctcTCTGCACGACCCAGCCGCTCCGTCCCCCGCAGGGTACACAACTAACAAGacGGTGTCGGTGTGGGGCAGTGGCGGCCGTATGGAGCTGACGCCCTCGCGCTTCATAGCGCTGCAAGCCGCGGTGCAGCCGGACTGGTACCAGAGCATGGCAGACGGGGAGACGCTTCAGGCCGACACCTCAAGGAAGAGGGTGAAGAAGGCTGTGGACCGCAGCCTGGCCTTCCTGGACCAGTGTCTCCAGCTGCACCACCAGACCCAGGAGCTGAGCCACGCAGAGGTGTTCGGAGTTGTGGAGGGCGGAGACATTCTGGAGGAGAGGTTGCGCTCGGCCCGGGAGACTGCCAAGCGGCCCGTGTCTGGGTTCGTCCTAGACGGGTTCCAGGTGGACGCCATGAGCCCGGAGGTCCGACTCAACCTGCTCTCTGCCGTCACTGCTGAGTTGCCCGAGGACAAGCCCAGgtTGCTCCAGGGGGTGGGCCGCCCTGACGAGGTGCTGGAGTGTGTGCAGGCCGGAGTGGACCTGTTTGAGAGCTTCTTCCCGTACCAGGTGACCGAGCGCGGCTGTGCCCTCTGCTTCAGCTACACCTACCAGCCCGACCCGGAGACAGAAGGTATCGAGTTCACCCCAGTGCTGGAGAGAAATGGTGCCACAGAGGAGGCGGGAGTGCAGAAGACTGGAGAGAAGGAGGGTGACAAGGCTGACGATACCTGGGCGGAGGGGCCGATGACACAGTTCGagatggatctgaaagatgcaaGGTACAGGGAGGACTTCTCCCCTGTGGTGCCAGGCTGCTCCTGCTACTGCTGCCGCAACCACACGCGCGCCTACCTGCACCACCTGCTCCTCACCCACGAGCTGCTTTCCGGTGTGCTGCTGATGTTGCACAACATGCACCACTACTTCTGCTTCTTCCAGGCCCTGCAGGGGGCGCTGCGACACGGCCAGCTCCACTCCCTGCGACGGAGAGTGCTGCAGAGAAGAGACGGCACCTCCTAGGGGGTGGAGGATAGTggcagtattatatatatatattttaatgatatttggtagtttttttgtgttgttttttaaattacagatgGATGCTATTCATGTCTTAAAGACTGTATTCCACAAAGACTAATACTTATAATAAAAAC

Function

GO:

id name namespace
GO:0008616 queuosine biosynthetic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0008479 queuine tRNA-ribosyltransferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15407 QTRT2, QTRTD1; queuine tRNA-ribosyltransferase accessory subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016518 True 1728 mRNA 0.57 9 24007888 24020791

Neighbor

gene id symbol gene type direction distance location
AMCG00016511 NA coding downstream 56559 23945194 ~ 23951329 (-)
AMCG00016513 NA coding downstream 70654 23934903 ~ 23937234 (-)
AMCG00016514 NA coding downstream 76308 23927891 ~ 23931580 (-)
AMCG00016510 NA coding downstream 82172 23916943 ~ 23925716 (-)
AMCG00016512 NA coding downstream 105083 23893423 ~ 23902805 (-)
AMCG00016517 NA coding upstream 8599 24029390 ~ 24039800 (-)
AMCG00016523 NA coding upstream 27029 24047820 ~ 24062602 (-)
AMCG00016524 NA coding upstream 42476 24063267 ~ 24068003 (-)
AMCG00016521 atp6v1a,atp6v1ab,LOC107584963,LOC107654231,LOC107701669,LOC107591235 coding upstream 52651 24073442 ~ 24092600 (-)
AMCG00016522 NA coding upstream 102645 24123436 ~ 24141614 (-)
G14016 NA non-coding downstream 64510 23942044 ~ 23943378 (-)
G14015 NA non-coding downstream 66350 23941318 ~ 23941538 (-)
G14013 NA non-coding downstream 73421 23934166 ~ 23934467 (-)
G14012 NA non-coding downstream 74045 23933009 ~ 23933843 (-)
G13990 NA non-coding downstream 124929 23880959 ~ 23882959 (-)
G14092 NA non-coding upstream 126608 24147399 ~ 24147677 (-)
G14093 NA non-coding upstream 144366 24165157 ~ 24165420 (-)
G14171 NA non-coding upstream 315153 24335944 ~ 24336827 (-)
G14181 NA non-coding upstream 404373 24425164 ~ 24425498 (-)
G14213 NA non-coding upstream 580907 24601698 ~ 24602007 (-)
AMCG00016505 NA other downstream 122630 23864581 ~ 23885258 (-)
AMCG00016504 NA other downstream 145149 23841062 ~ 23862739 (-)
G13969 NA other downstream 307633 23699149 ~ 23700255 (-)
G13962 NA other downstream 552077 23455092 ~ 23455811 (-)
AMCG00016480 NA other downstream 3324864 20666142 ~ 20683024 (-)
AMCG00016531 NA other upstream 288465 24309256 ~ 24323458 (-)
AMCG00016538 smpx,LOC107721880,LOC107590224,LOC107663668,LOC107705278 other upstream 532901 24553692 ~ 24566956 (-)
G14305 NA other upstream 860357 24881148 ~ 24882098 (-)
AMCG00016562 rnf6 other upstream 987183 25007974 ~ 25015343 (-)
G14392 NA other upstream 1059777 25080568 ~ 25083699 (-)

Expression


Co-expression Network