AMCG00016519


Basic Information

Item Value
gene id AMCG00016519
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24104905 ~ 24118373 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016519
GTTAGGTTGTGAGGAGAGTTGATGGCCAAGAAAAACTAAAGTTTTGACAGGGACGCGAGCCGCAGATGGAGAAAAACTCGGCCTGGCAGCGAGGGCTGCAGCGCCGTGGTCAGAGGAGCTGCTGACTGTCCGGGACGCCCCTTCAGCAGAGACTGACCGCGCGCACTGACTGGACTGTAGCTGAAGGTGGCGGAGagaCGTGCCCGTGTGAGCATGCCGGAGATGACTGAGAACCAGACCCCTGCCTCCAAGCCTCACCGtttcgGCGCTGGCAGCCATGTTGAGAGGCACCGGAAGAAGAAGATCAACGCAGGAATAAACCGGATTGGAGAACTCCTGCCGTGCTCTCAAGCTTTAAAACAGAGCAAGAACATGATTCTGGACCAAGCGTTTGTGTACATCACTGAACTGAAGCAGCAGAATGACGAGCTGCTTCTAAACGGAGGAGACCGAGAGCAAGGTACGCTCCCCAGCTGCACCCTGTGCGCTGAGAGGCAGGAGCGCCGGTGTGTGCACGAAGAGCTGCGCCGGGAGAACGCCCACTATATCGAGCTGCTCAAGGCCAATGGCATCAACTTCCTGGATGACCCCACCATCCACTGGAAGGGCAAGTTGAAGTGCACGAGGGTGGCGAAGGTCACGCCCACGCACCAGCAGGTGCCCGAGGGCATCATCGTCTACTCCAATGGCAACATCATCTGCCCTGGCCGGCAGGACGTGCCGGTACAGAATGTGGTCTTCAGCGCGGGCCAGAGTCCCAGGAAGCCCCCTGCCGAGGCAGTGGTGGTGCAGGCTGGCTGCGACGTGACGCCAGCAGCCCTCCCGAAACTGTGCTCCAATGGGGCCCCACCACAGACCACAGCCCCTGCCTTGTCTGCAGAGACCCGGGACACGGTTGCTCCCACCCCGCCCAGCACCGTGCATGAGTCGGCAGGGAGTGCATCTCCCGGCGCAGTGCGGCCCGCCCAGAGACTGACGCCCTCTGTCTCCTACATCACCCTGCAGGGGTCACACTATGCCCCCCCCAAGAATCCCCCTGTCTGTCCTCCTATGCAGAACCAACCTGTGGGGTCGGACAGCTGTGGCAAACTGCCGGCTGCAGCCATCAGCCCTGTGAGAGTCTTGCCTTtgcagctgcagcaggtcaATGCCTCCAGTCTGCAGAAGGCTCCTCCGGGACCCCAGCAGCTGGCCCTACAGGCCCCAGAGAAAATATTCCCCACGCCCGGCCCAGACAGCGGCTCTGGGGTGCTGAGCCATGCATCTCTATGCCCATCCACCTCTCTGCCCCCTCCGCTGGCCTCCCCCGGCAGCGGCCCCGATTCCAGCAGCGTCAACACCCTCCCCCGGATGACATCATCCGGGAACACCCAGACCACCTGGACCACACTGCAGCTGGCAGGCAACACCGTGCTGCCCCTGAATCAGATGGCCTCCAGTCTCATGCCCACCTCGGGGAATGAAGGCATAGGCTCCATGACAGAGGGCAGCAGGTCTGCCCCCACTGCGGGGTCGAGGGGGTCTGTGTGGTCTGCAGCCCACCCTCAGACAGCAGCGGTCACCCTGCCGGTACAGCCAGTCCGAGCCCAGCCCCAGATCCCACTGCCCCCTCATGCCAGTGTGATGCCCCTGTTGCAGGCCATGCAGGTAATCCAGATGACGAATGCAGCTGGGGCTCCCGTCCCACAGGCGGCCAGCAACCCTAACGTGGTCATCCTGCAGCCCGCCAACCCCTGCCCCACCCCAGCCGTGGTCAGGGAAGGCCTGGCCAATCAAGCCCCGGCCCCGTGTCAGCAGATTGTCATCATCCaagcagccaatcagagctcAGTCCTGCAGACCCCACAGACCAGTGTTGTACCCGCTAATGTCCCGGTGGCCAATCAAATTGCCGTTTCGAGCTGCTCAGCTACCATCCCCAGCGTGCAGACCGTGGGAGGCAAACACCTGGTGCACATTCTCCCTCGGCCACTCGCCTCCTGTGCATCTAACACAGCAGGgcctgcacagacacagacgcagacacagacacagacacatacgcaaacacagacacaaatgcaGACGCAGGTGCAGATGCAGACACAAACGCAGATGCAGTTGCAGATGCAGCAGCAGCCTCAGACCATTTCAGTGAATGGTCAGATTTTCGCCCTGCAGCCCGTAAAGGCGTCCACAGGGgtgcccagtcagagccccatGCATATAATCCAGCCCACTACCTGCGAGGACCCCAACACCAACGTGGCCCTCAACACATTCGGCGCCCTCGCAAGTCTCAACCAGAGCATCTCGCAGATGGCCACCCAGAGCTGCATGCAGATCACTATGGCTCCACCCCCTAATCAGACAGTGCAGTCCAGCAGTGGCCAGGCGTGCAGCCCCCTACCTAGCACCACTGTCACTGTGGTTTCCAGTGCCGGCAGCCCCACTATCTCCTCATCTGCTAGCGGCTCCATAGCTGCCGTGCCTGGGGTCTTGAGCAGCAGTGTCCCCTCCAGCAGCACCAGTGTCCCCACCAGCAGTAGCAGTGAAGTCAAACTGGTGAAGTCAGGCACACCCTCGGGAGGCAAACCCAAAAGGACACCAGCAAAGAAATCCAGCTCGGCCAAACAGGCGGCCCCCCGACAGGGCCCCGGCTCCCTGACCAATCCTCCGCGTCCTGTGGGGAAGCCACCAGGGCCTGCCAGGGTTCAGCCGCAGCCCCCGAGCAAGGAAGCCCGTGCTGTCCCTGCCGAGGGCTTGTCCCCTGCGGTGGAACCATGTACCACAATGGTGGCTCCAGCTGTGGCGGCAGTGGCATCTCCTGTAGCTTCCACCATTGCTGTCAACCAGGCTCCTGGCATGGGGCTCCCTGAAGCAGTCACATGTGCAGTCACTGTCGCTTCCTGCTCCACAGAGGCAGAGTCCTCATTGGGACAGAGGCCTGTTCCTTTCACCCCCGAGTTGTGCTCCCAGGACACTATTTCAGCCACTCAGCAACGCAGCTTACAGGAGAGCCAGTCGACCAGCCCACCCCAGGAGACCTCTGTGGCCACCTCAGCTGCCTCCTCCGAGTCCCTGACCACAGTGATGGCCAGTATCCCAGAGCTTTCTTCCACCAGCTCCAGTTCTTGTCTGGATGTTCCTGCTCAGGCCTCAGGAGGCGAGCCCAGAGTCACTGATGTCTGTGGTGGCAGCAAACCGGTAACATGTGCCGCCCCCTCTATCTCCAAGAGTGTTCCCGACCCTCGCCTTCAACAGCCCCAGTCCGTCCCTCTGCCCGCTGCCCAGACCAAGCCCCTGCCATCAGATGGGAAGCAGGCAGTCCCTGCGATGGCAGTTTGCTCCGAGACAAACAAGGACAAAATACTGCCCGTCCAGTTACCGCCCAGAGAGCAAACCCATTCCAGGCAGTCCCCCTCGGCTGAACTGACCGAGAAGGCTGCTGAGGGCGGGGCTCTTTCCACAAACCGCAAGGAATCAGCTCCCCAGCAACAAGTGTGTGCTCTGGAGCAGGATGCGCTGGGTGGCCCCTTGGTGTCAAGCCGGCAGACTGACTCGCCTATGTCCAGCAGCTCTGGGAGCAGCCGGGGGTTCTCGGTGGCTTCCATGCTGCCCAATGCCAGCAGGGAGGAGGCGCCCTGTGTCAGCTCCTCTACCAGCACCTTCAGCGGCTTCAGCTTCTCTGAACAGGCGGACATCTTTGCTCTAGCAGCCAAAGCTATTTTCGACCATGAAAACCAGAGCAAGAAAGCCTCTACTGCTGCTGCCACTGGGAGTGTGGTAGATATTGCCCCAGGATGGGAGGTTCCCAAAGGCCAGCAGACGCCCTCCCTCACCAAGGACAGGCCAGGCAGCCAGCTCCACAAGCTCCCCAAGCAGCCGGAGACGCACAGTGTGAAGGCTGCCTCCCAGGCCCAGCTGAGCAGCGACAGGGTGATGGTGTCGTCCAGTGGGAGCGATGCAGGGACGACCCACCCCCAGTCACTCCCATCCTCTCAGGCCTCAGGGCCAGTGGGCAGCCTCAGCATCAACAACCTGATCCGGCAGAACAGCATAAGTCACCCGTACTCCTGCCCGTTGGGCCTGACACAGACCAGCAACGAACCGACTCCTGTGTCTGCTGCCGTGCATGTGCCCCGGTCCTCCTCCAGCACCTCGCTGCTCTCGCAGTGCCCGGGTGGTGGGCAGATGTCAGAATACACCCCTCTGAAGAGCGTGCCCATGCGTGCCCAGGCTGTGAGTGACCTGCACCACAAGCAGAGCACTGAGCACCTGAAGGACGCAGCCAAGCGACCCACCCAGGAGGACCTGCTGCTGCCCACGAGCAAGCGACAGAAGTCGTGCCACAGCTCAGGTATGGGCAGAGTGGACATGAAGTCTGCAGTGGGCAGGGCCCTGGATACGGTCCCCGACCACCCCCATATGATGGTCAGCCAGCTGCCCCCCATCTCCGTGAGTTCTGCTTCTTCCAGTGGCGGCCGCCCACCCCAGGATGCACTGAGTGCTCTGTTCCCAAACAATGCCTTCATGAGCACAGTGCTCAGGCAGTCGGACATCCACTGCGCCCCTCAAGTGGCCAtccaggagcagcagcagcagcagagtcAGCAAACTGCGCAGCACTTACAGCAGCATCCCCAGCACCCCACGGCACCGGGGGCACTCCACCTGAGCAGTGGAAACCCCTAcctcaaacagcagcagcagcaacagcaacagcaacagcaacagcagcagcagcagcagcagcagcagcagcagcagcagcaagaacagcagcagcagcagcagcagcagcagcagcagcagctccagggcTCGCGACACCACCTGTACCAGCTACAGCATTGCCTAACCCAGTCAGAGGGCCCGCCAGTCAGCCAGCAGCACCACAGCCTGCACCAGCAGAGGGCCATGCAGCAAGAGGTGCAGATCCAGAAGAAGAGAGGTCTGGTGCGTGGGGGCCAGCAGGGGCCAGCCATGGCTCTGCAACagaagcaacagcagcaacagcagcagcagcagcaccatgGCGGAGGTGGGGACCAGTCCCTGCAGCAGAAGGGCggggggcagcagcagcagcagcagaagcagcagcagcagcagcagcaacaacatcAGCAGACGTCTCACTCCCGCCACCAGCACCTCCAGCAGCAgatgcagcagcagcattttggaggACCCCACCCAGAGAAGAGTTGCGAGACCCACGGGAACGGCCGGCAGCCGCAGGGTGTGCAGGTGGAGCACGTCCCTGGACAAAGCACAATGCAGAGGCTCCTGACCTCCCGCACACTGGAGCAGCAGATGACCTCCCAGCCCAGCAGCGTGTCCCGGCCTGCCGACATCATCTGCACTCcctccaggcaggagaggaacCGGATCTCCAGCTACTCCGCAGAGGCCCTCATTGGGAAGACGCCCTCGAACACAGATATGAGGAGCTACCTAGAGGCATCCCGGGGAAAAGGCAGCGTGCACAACATCCAGGGCAGAATCCCGGCGGAACACTCTGTTTCGTCTGACGTGCAGAGGGTGTCTGAATGCCCTCCCTTCAAGACCATCGGCGCCAACCAGCACCAGTTGGGCAGCTTTGAGGTGCAGGTCTCCCGTAGTAACGAGATGTCCTCGAAAGTCGTCCCGGGACACCGAGGGGTCCAGTCACAGGGCTTTCGGATTGGACAGGGGGCGTCCATCGAGCGGCAGCAGCGAGGGCCCTACGCGCCGCCCCAGAGCCTGCAGGGAGGAGCCGCCATCCAGTCCAGGGAGAACGAGAGCGCCTGCCACCAGAGCTTCATGCAGAGCCTGCTGGCACCCCACCTCGGGGAGCAGGTGGGTGGAAACCAGAGGATGCATGAGCACCAGAGGGTGACGCAGTGCTGCCCGCCGGTCAGCATGGAGTACAGCTGCCCCCCATCACGAGACGGTGTCCACCTGCGCCGGGACAGCGAGGCCCAGGGCCGGGACAGCTGCGACATGCCGCTTGGGCCCATCAGCTCGAGGAACAATGCCATCAACatctccttctccagctcctcctcggCCGGGGACCTGCAGGCCAAGACCGCCAGCCCCAACGTGCCGGCACAGAAGCCCATGAGGATCAGCGATGGCCAGGGCAACAAGGCACACCTAAACCCGCAGGTCAGCGCTAATATGCAGCACCCAGCAGGGGGCGTGCGTCCTGGCCTGCCCCACTCTGCGGTACcccacagcagcacagagcctGGACGCTCCTCCGTGCGGGCACCCAACTCTGTCAGCCAGCGCTCGCGCCACCCGGGACAGGATGGCCAGAGCTCCAAGATCCGCCCAACGGAGAGGGGGCGATCTGGAACCCTGCGCCCCGGGAACCCCTTTGAGCCGGACGCCCACCTGCCCCTGCCGTCCAGCGGGGGGATGATCCTCAGTCGCCAGCAGGGGGCAGAGCGGCGCGGCAGCATTGTGCGCTTCATGGCAGACAGCCCCCAGGTGGGCGGGGACAACCTTTCAGCAGAGCAGCATGGCCTGTCGCAGAACTTTGGCTTCCCCTTCATCCCTGAGAGTGGCATGAACCCCACCATCAACACCAACCCCTCCTTCATCCCACCCGTGACCCAGCCCAGTACCGCACGGACGCCTGCCATCCTCCCAGTAGAGCCGCAGAATACGCTGCCCTCCTTCTACCCCTCCTACTCGCCTGCCACCCACCCCAGCCTGCCCAACGACATCTCCATCCAGTATTTCTCCAACCAGATGTTCAGCAGCCCCAGCACGGAGAAGAGCAATGGTGGCAGCCTCAACAATCGCTTCAGTTCCATCCTGTCCCCGCCACGGCCTGTGGGCTTCGCACAGCCCAGCTTCCCCCTGCTCCCCGACATGCCACCCATGCCCATCGCCAACTCCAGCGGCATCACTCCCCACCTCTCCAACTTCAACCTCACCTCGCTGTTCCCCGAGATTGCCACCGCGCTGCCCTCAGACAGCTCTACCATGCCCATGTCCCCCTTGCTCTCGCTGTCCAACTCTGCTGCCTCCGACTCCACCAAGCAGCCCTCCAACCGGCCGGCCCACAACATCAGCCACATCCTGGGCCACGACGGCAGTTCGGCCGTGTGA

Function

GO: NA

KEGG:

id description
ko04330 Notch signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016519 True 7089 mRNA 0.62 8 24104905 24118373

Neighbor

gene id symbol gene type direction distance location
AMCG00016520 naa50,LOC107732992,LOC106590472,LOC106579447 coding upstream 3340 24089830 ~ 24101565 (+)
AMCG00016515 NA coding upstream 27619 24073722 ~ 24077286 (+)
AMCG00016516 NA coding upstream 74949 24022414 ~ 24029956 (+)
AMCG00016508 NA coding upstream 132064 23959304 ~ 23972841 (+)
AMCG00016507 ccdc58,LOC107733097 coding upstream 170455 23925791 ~ 23934450 (+)
AMCG00016529 NA coding downstream 206577 24324950 ~ 24336827 (+)
AMCG00016536 NA coding downstream 450755 24569128 ~ 24580184 (+)
AMCG00016541 sms,LOC106603082,LOC107700049 coding downstream 463604 24581977 ~ 24597847 (+)
AMCG00016542 LOC107663624 coding downstream 483327 24601700 ~ 24617531 (+)
AMCG00016540 NA coding downstream 550839 24669212 ~ 24683200 (+)
G13979 lipt2 non-coding upstream 239105 23862215 ~ 23865800 (+)
G13953 NA non-coding upstream 757193 23347427 ~ 23347712 (+)
G13949 NA non-coding upstream 779145 23325560 ~ 23325760 (+)
G13943 NA non-coding upstream 992740 23111926 ~ 23112165 (+)
G13939 NA non-coding upstream 1094036 23010646 ~ 23010869 (+)
G14132 NA non-coding downstream 199427 24317800 ~ 24321319 (+)
G14136 NA non-coding downstream 218597 24336970 ~ 24338848 (+)
G14127 eif1ax,EIF1AX,eif1axb,LOC105905255,LOC106563585,LOC106590461,LOC108411992 non-coding downstream 251953 24370326 ~ 24375827 (+)
G14177 NA non-coding downstream 300985 24419358 ~ 24419607 (+)
G14354 NA non-coding downstream 1003710 25122083 ~ 25122392 (+)
AMCG00016506 NA other upstream 159881 23938051 ~ 23945024 (+)
AMCG00016502 NA other upstream 221959 23866267 ~ 23882946 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other upstream 2272757 21782106 ~ 21832148 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 4225180 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 5631216 18419017 ~ 18473689 (+)
AMCG00016537 NA other downstream 361333 24479706 ~ 24561807 (+)
G14326 NA other downstream 889589 25007962 ~ 25010687 (+)
AMCG00016558 rpl21,LOC107591224 other downstream 962301 25080674 ~ 25085097 (+)
G14361 NA other downstream 1014825 25133198 ~ 25133879 (+)
AMCG00016566 NA other downstream 1031975 25150348 ~ 25157461 (+)

Expression


Co-expression Network