AMCG00016520 (naa50,LOC107732992,LOC106590472,LOC106579447)


Basic Information

Item Value
gene id AMCG00016520
gene name naa50,LOC107732992,LOC106590472,LOC106579447
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24089830 ~ 24101565 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016520
TTTCGTCAACAGGACACCTCACTACAGCCCGTTCTCCCCCGCTCCTCCGGCGACCTTTTGTCCTTCGATGGTGTGGAGCCAGCGGGGTCAGAGTTGAGCTGTCTGTGCGGTGCCGTGGAGGAGGGAGTGAGACAGATCCATGTGGAAGAGGGTATCTGCGGGAGTCGATCCTCACCCGAACTCAGCCCGAATTCACCCCCGGACGCCACACTACTGTCACCTTTACCCGTAGAGCAGTCGGGAAACCTGCCCCAGTTCACCATGAAAGGTAGCCGGATCGAGCTGGGAGACGTCACGCCACACAACATCAAGCAGCTGAAGCGGCTGAACCAGGTCATCTTCCCTGTCAGCTACAATGACAAGTTCTACAAGGATGTGCTGGAGGTGGGGGAGCTGGCCAAGCTAGCCTACTTCAATGACATCGCAGTGGGAGCAGTGTGCTGCAGGGTGGACCATTCCCAGAACCAGAAGCGGCTCTACATCATGACTCTGGGCTGCCTGGCCCCGTACCGTAGACTGGGCATAGGTAGGGCCCCAGCGCTCTGCTCTCGCAGCCCGTCTGTGCACGGGGACTTTGTGCATGTCCAGATCAGCAACGAATCTGCTATTGACTTCTACCGGAAGTTCGGGTTCGAGATTATAGAAACGAAAAAGAATTACTATAAGAGGATAGAGCCGGCGGACGCCCACGTGTTGCAGAAGACCCTGAAGGGCCAGTGCCCAGCCCCCGGCAGCGAGCTGCAGAAAGCCAACTAGAGCAAGGCGACTCACCTAGGAACAACACAactctcgcgctctctctcgCCCAAGCGCCAGAACTGTACCAGACGCCCAGTGCGAGAACTCTGGATGGTCGACGAAACATTTACCACTTTCTTCAAGGGACATTTAAATTTactagaaaagaaaagaaaagaaaaaatcgCTACATTtcttttgcaaaaacaaaatggagtcgttctaatgttttccttttattattattattattattattattataattattattgttatttttgtttcattcggTGAGTTTGATGACAAAACAATCGTAAGGTTTCAGAATCCAAAAGTGCATCAGAAGAAAGTGTTTAAGGAAGTTACCAGGAGCAGCCCTCTGAAGGGTGGGAGTTATAGGTTTATGAGTTGttagtctatttttttttttggtcttttttccacccattttaaagtaaaaattgGTCATTAAGGTTAGGGAAATGCATCTTTGCCGTTTACAAAAGCTGATGCCGGAGAAAGGAGTGACGGTAGTGGGAGGCTGTGGGTCCACAGCAGCGAATAACACGGCGCCTGGGATGTTCAGCGTTGTGTTCCGTCAGTGGGGCAAAAGGAAGAACGCAACTAGACAACATGGGTaaaaaggaggaagaaaactgcactgattttttttttttaaagactgaatGGTTTTGCGACGAGTAAATGCGTTCACTGCGTTCTTTCAGCCATGTCTGTGGGATCCAGTCCCTCCGGTTAGCTCTAACACAGAAAGGGGATTGGGAACACCCAGCCTGTcggggtggggggaggagggaCTGAGGGATGGGGATTGAAGTCCACAGTGAAATATCTTGGTGGCGGTGTGGAG

Function

symbol description
naa50 Predicted to enable H4 histone acetyltransferase activity; peptide alpha-N-acetyltransferase activity; and peptidyl-lysine acetyltransferase activity. Acts upstream of or within somitogenesis. Predicted to be located in cytosol and nucleus. Predicted to be part of NatA complex. Predicted to be active in cytoplasm. Is expressed in blood vasculature; head; and myotome. Orthologous to human NAA50 (N-alpha-acetyltransferase 50, NatE catalytic subunit).

NR:

description
N-alpha-acetyltransferase 50

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0001756 somitogenesis biological_process
GO:0005737 cytoplasm cellular_component
GO:0008080 N-acetyltransferase activity molecular_function

KEGG:

id description
K20793 NAA50, NAT5; N-alpha-acetyltransferase 50

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016520 True 1612 mRNA 0.50 5 24089830 24101565

Neighbor

gene id symbol gene type direction distance location
AMCG00016515 NA coding upstream 12544 24073722 ~ 24077286 (+)
AMCG00016516 NA coding upstream 59874 24022414 ~ 24029956 (+)
AMCG00016508 NA coding upstream 116989 23959304 ~ 23972841 (+)
AMCG00016507 ccdc58,LOC107733097 coding upstream 155380 23925791 ~ 23934450 (+)
AMCG00016509 NA coding upstream 176397 23904004 ~ 23913433 (+)
AMCG00016519 NA coding downstream 3340 24104905 ~ 24118373 (+)
AMCG00016529 NA coding downstream 223385 24324950 ~ 24336827 (+)
AMCG00016536 NA coding downstream 467563 24569128 ~ 24580184 (+)
AMCG00016541 sms,LOC106603082,LOC107700049 coding downstream 480412 24581977 ~ 24597847 (+)
AMCG00016542 LOC107663624 coding downstream 500135 24601700 ~ 24617531 (+)
G13979 lipt2 non-coding upstream 224030 23862215 ~ 23865800 (+)
G13953 NA non-coding upstream 742118 23347427 ~ 23347712 (+)
G13949 NA non-coding upstream 764070 23325560 ~ 23325760 (+)
G13943 NA non-coding upstream 977665 23111926 ~ 23112165 (+)
G13939 NA non-coding upstream 1078961 23010646 ~ 23010869 (+)
G14132 NA non-coding downstream 216235 24317800 ~ 24321319 (+)
G14136 NA non-coding downstream 235405 24336970 ~ 24338848 (+)
G14127 eif1ax,EIF1AX,eif1axb,LOC105905255,LOC106563585,LOC106590461,LOC108411992 non-coding downstream 268761 24370326 ~ 24375827 (+)
G14177 NA non-coding downstream 317793 24419358 ~ 24419607 (+)
G14354 NA non-coding downstream 1020518 25122083 ~ 25122392 (+)
AMCG00016506 NA other upstream 144806 23938051 ~ 23945024 (+)
AMCG00016502 NA other upstream 206884 23866267 ~ 23882946 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other upstream 2257682 21782106 ~ 21832148 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 4210105 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 5616141 18419017 ~ 18473689 (+)
AMCG00016537 NA other downstream 378141 24479706 ~ 24561807 (+)
G14326 NA other downstream 906397 25007962 ~ 25010687 (+)
AMCG00016558 rpl21,LOC107591224 other downstream 979109 25080674 ~ 25085097 (+)
G14361 NA other downstream 1031633 25133198 ~ 25133879 (+)
AMCG00016566 NA other downstream 1048783 25150348 ~ 25157461 (+)

Expression


Co-expression Network