AMCG00016522


Basic Information

Item Value
gene id AMCG00016522
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24123436 ~ 24141614 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016522
CCCCATCCAGCCCCCACCGGATGATGACAGACTCTTTCCCATCGTGCTGGAGGACAATGGCGCTGCGGACGATCGGATTGGTGGTGACGTCGCTGCTGGTGACAGCTGTACATGGACAGCTATCTACTGATGATGAAATGCCTGTCTTCATGGTGCAGCCCTCCTCGGTGGTGCAGAAGCTGGGTGGCCCAGTGACCCTACTCTGCAGCGTGGAGCCCCCCAGTGCCAACGTCAGCTGGCGTCTGAACGGGCGTGAGCTGGGTGCTGCGAATGCCAGCCTGGGGGTGCAGCTGAATCCCACCGCCTTGGTCATCCCCACCCTCACCAACACCACTGTGGGCCGCTACCAGTGCATTGCCACGACCACCGCCGGAGCCCGAGCCAGTGTCCCTGCCAACGTCACGGCTGCCAAGCTGCGTGACTTTGAGCCGGACGACCAGCAGGAGATCGAGGTGGACGAGGGGAACACAGCGGTCATCGAGTGCCACCTGCCGGAGAGCCAGCCCAAGGCCCAGGTGCGCTACAGTGTGAAGCAGGAGTGGTTGGAGACCTCCAAAGGAAATTACCTCATCATGCCCTCGGGGAACCTGCAGATCGTCAATGCTACCCAGGAGGATGAGGGCACCTACAAGTGTGCCGCCTACAACCCTGTGACCCAGGAAGTGAAAACCTCCTCCTCCTTGGACAGGCTGCGCATCAGACGCTCAACATCGGAAGCTGCCCGCATCATCTACCCGCCGGGCTCCCAGTCCATCATCGTGACAAAGGGGCAGCGACTGGTGCTGGAGTGTGTGGCAAGCGGCATCCCGCCCCCGCAGGTCACCTGGGAGAAGGATGGCGTGGGACTGCGGCCACGCAACAACACGCGCTTTCTGCTGAGCAACCTGCTGATCGACGCGGCGGGCGAGGGCGACTCCGGCACCTATGTGTGCCAGGCTGACAACGGTGTGGGCGCCCTGGGCAGGGCCTCCATCCTGTACAACGTGCAAGTGCTGGAGCCCCCGGAGGTGATGGtggagctgcagcagcaggcCGTGCCTTGGGGGGAGAATGTGCGGTTCAGCTGCAGCGTGCGGGGGAACCCCCAGCCCTCAGTGGTGTGGCTACACAACGCGCAGCCCCTGGCCCCCTCGCAGCGCCACCGGCTGTCCGTGCGCATGCTACGTGTGCTGAACGTCGGACCCCAGGATGATGGCATCTACCAGTGCATGGCGGAGAACGGGGTTGGCAGCTCGCAGGCCGCAGCCCGTCTCATCACCCTGTCCCCAGGATCGACGTCCAGAGTGGGGAGACTGCCCTCCGCTGACCTCCTCCCTCTGCCCGATATCCTGAGGCCTCTGAGCCCAGACAAGATGCTGATCGACCGGGCCTCTCAGAAACCTGGGGCCACGGTGCCGGCCAGCCCCCCAGACTGCTCAACCTTCTCAGGACAGATCTCTCTGGCTGAGGCCCCCATCATCCTCAGCCTGCCCAGAACAGGCAAGGCCGACTCCTACGAGCTGCTGTGGCGACCCCGGCACGACGGAGGGGCCCCTGTGCTGGAGTACATCGTGAAATACAGGAAGtCTGGAGACCCCACAGACGAGTGGACAGTCAGTGCCATCCCCGGCTCCCTGCACAAGCTGACCCTGGCGCGGCTGGACCCGGCCAGTCTGTACGAGGTGGAGATGGCGGCCCGGAACTGCGCCGGCCTGGGGCAGCCGGCTATGATGACCTTCAGGACTGGGAAAGGTCACATTAACGGTCAGAAAACTCCGATCAAGATAGTCCCTGGACCAGTGGAGACCGCACGACTCTCTCctcccgAGGCCCCTGACCGCCCCACGATCTCCACGGCATCGGAGACCTCTGCGTACGTCACCTGGATCCCCCGGGGCAACCGCGGCTTCCCCATCCAGTCGTTCCGCGTGGAGTACAAGAAGCTGAAGAAGGGCGGGGACTGGACCGTGGCCGTGGGCAACATCCCGCCCTCGCGCCTCTCTGTGGAGATCGCCGGCCTGGAGAAAGGTGAGGGCAGGCCTGGGGGAGGAGCAGCAGGCGCGCCCTCCAAGGCCTATACCGTGTCGGGCAGCAGCCACACCCACAACGAGCGGCCCATCGCCGGGCCCTACATCACCTACAACGAGGCCATCAACGAGACCACCATCATGCTGAAGTGGACGTACACTcccaccaacaacaacacccCCATCTACGGCTTCTACATCTTCTACAGGCCCACGGACAGTGACAACGACAGCGACTACAAGAAGGATGTTGTGGAGGGTGACCGGTACTGGCACTCCATTACCGATCTGCAGCCTGAGACGGCCTATGACATTAAGATGCAGTGCTACAATGAGGGTGGGGAGAGCGAGTTTGGCAACGTTGTGATCCTCGAGACCAAAGCACGTAGACACCCGCGGCCCCCGCTGGTGGAGACGACGCCGGGCCCATTGGAGATGGAGGGCAGCGTGGCCACGGTGCCGCGGTCCAGTGACCTGCCCTACCTCATCGTGGGCGTGGTGCTGGGGGCCCTCGTCTTCATCATCGTCGCCTTCATCCCCTTCTGCCTCTGGAGGGCCTGGGCCAAGCAGAagcAGACCTCAGACCTGTGCTTCACAGGGGGCCCTGCGCCCCTGTCGTCCTGTCAGTACACCATGGTGCCCCTGCAGGGCGTGGTGCTGCCAGGTGGACACTGCCCGGGGGAGGGGGCTCTGCTGCCCCACACAGACTACAGCACCAATGGCAAGCTGCCCGGCTACTGCCTCTCCAGCGCACACCAGTCCACCCAGAGGTCCCtaacccctctctcccctgGCTGTCAATACCCCAGGACTCCAGAGCCAGACCACAGTGAGACCTCCTACCTGCCCGATGACTCCACCCACCAACTTCTCCACACGCCCGAGGAGCCGATCAACTTGTGCATGATCACGGGAGGCGACGCCCACTCCCACTGTGGAGGAATGGGTGTGGCCAGGGAGGTTCACCTTAACGCAGGCTTGCCATGCATTGTGCTTTTAACTCCAGTGGAGGAAGTTGAAAATCCCAAAGTTCCAGAGCGTCCGAGTGGCTCCACTTCCACAACGCAGCAGCCCCAGAATGCCCTTCAACAGGAAGTGGTGTGGGGAGtgacagagaggtgtcacaatggGACACAACTGGAAGATAAAGGGACTCAGAACTCATTAAAAGAGTGAAAAGACTAtaggaggaaaaggaaaaagagaactatttatttttgtataacagacatatttatatatttatacttttgtaaataaattgatgtgttttgttatactgtacatatagggggatttgtattattattattttttttcttaaagcaaCATGGATATGTTTTACTCACAGAAAGCTGCCTGGCAGGTACCTATGGACAAAGGGAGTATTCTGCTGGAATCTTTTCAATTCCTTGTTTTCTTGTACCAAGAAAATCTTTAATCATGCCCCGTGTTCATTAAGAGTTTTACCAGAACATGCTTTGAACATACAATGTATGTTTTGGGCTCGACCTAGGCGTCAATATGGTAAATGCAGTCCTAAGTACTTTCCAAATTATCATTTtctcacattatttttgtataggtTTCTATGAAATAATGCAGAATGTCAACTCTGACGAATCGGAACACCACAATCCTTTAAAAATAGAGATCtgatttataaaacaatgtggAAGATACACTGGTACCTTGTTTTGTAGTACAGACGCAGTGCCGACGCTACAAACTGGCCTCCTGCAGTGGTGACTCTCCTGTTGACCCTGCACTACAACGTGCCAGTGGCCTTTGAAGAAACGCCGATTCCATCGCAATTAAACTGCAGACCCTGACAGTCCCATAGCGACCGCTTCGCTTGCCGTCCTCCGCAGACCAGGGCTCTGTGGTGTTCAGTTCCGCGCTGCCCTGCACATCGCTGTACCCACTCCAGCCTCCTGTAAATACTGAGCGTGTCAGCCCAGGGGCCGGGCTGTTCTATACCGTTCTTGAGCatcttttgtatgtttgtatgttttgcatGGTTGAAGCGTTTTGTACTGTTTCTTACAAGAAAGTATAAATCTGTGATTTGCAGGTGCcttcattaacaaaatactACAAAGCATGCTGACTAATTTCTTATAcagcaaaatggaaaatgtttaattttaagatCTCGTGGTGTTTggatatgcatatttatttttaggcatTTATATGGATTTATCTGTGAAAGAAATTCTGGTAAAACtggctttttatatatatatatatatatatatatatataatcagattttacacatttttaagatttatttgtgtgtgtgtatgcgtgtgtgtatgcgtgtgcgtgtgtgtgttatttttatttgactaGGAATATCTGTGTATTTCAGCAGGTCTTTTTTTGACCACAGTAATAGTCTCTTCAGAGACACTCATCCCTATTGCCCAGTGAGTATTATTGGTCCTGTGCTGCACGACTCCAGCAGTCGGGACGTTTGAGCTGCTCAGTGTTTGCATCCCTGTGTATCAGGGGAACCCTGTGCTTTGAGCTGGGGCGGTTAGCTCTCCGATAATATGAAGGATCACTTCTGTTCTGTCTTATGTAAATTGAACAGCCCTGTGTggcatctttatttttgtttgtgttttaaatatatacattttacatgtcaTGCACTTATGAAAAATAGCAAATACTTCCTAGGAGagaaatgcatgtaaataaagCTTGAGAAACTATGTCTTTGCATCATCTTTCCTTCCTAACGGGCCGCAGTGTTAATGTGCAGAGATCTGGGCGGACGCTGTTTCCCCTCACGGCTCGGGTATGGGTGTCACAGCCTGCAATTCTGCATTTCAGATCCATGCATCATATCACAGCAGGCGGCTGCAGCTGCTCCCTCACGAGCACGGACAGTTCTCCGGAATGAATTCCGATCTGAAGAGTAAACCCTATTTTCAAGCCTGTAAACTGATTTAAAAGCTAGTGTTCACAGCTGAATAGAGTGACTTCGACTACAGCTCTGCTTTCCTACAGACGTGAAACAGCATTTGGTttgtaaa

Function

GO: NA

KEGG:

id description
K20020 BOC; brother of CDO

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016522 True 5056 mRNA 0.54 17 24123436 24141614

Neighbor

gene id symbol gene type direction distance location
AMCG00016521 atp6v1a,atp6v1ab,LOC107584963,LOC107654231,LOC107701669,LOC107591235 coding downstream 30836 24073442 ~ 24092600 (-)
AMCG00016524 NA coding downstream 55433 24063267 ~ 24068003 (-)
AMCG00016523 NA coding downstream 60834 24047820 ~ 24062602 (-)
AMCG00016517 NA coding downstream 83636 24029390 ~ 24039800 (-)
AMCG00016518 NA coding downstream 102645 24007888 ~ 24020791 (-)
AMCG00016525 LOC107580614 coding upstream 56271 24197885 ~ 24213659 (-)
AMCG00016526 NA coding upstream 74333 24215947 ~ 24243375 (-)
AMCG00016528 NA coding upstream 105568 24247182 ~ 24249577 (-)
AMCG00016527 NA coding upstream 108503 24250117 ~ 24270251 (-)
AMCG00016533 NA coding upstream 149080 24290694 ~ 24304314 (-)
G14016 NA non-coding downstream 180058 23942044 ~ 23943378 (-)
G14015 NA non-coding downstream 181898 23941318 ~ 23941538 (-)
G14013 NA non-coding downstream 188969 23934166 ~ 23934467 (-)
G14012 NA non-coding downstream 189593 23933009 ~ 23933843 (-)
G13990 NA non-coding downstream 240477 23880959 ~ 23882959 (-)
G14092 NA non-coding upstream 5785 24147399 ~ 24147677 (-)
G14093 NA non-coding upstream 23543 24165157 ~ 24165420 (-)
G14171 NA non-coding upstream 194330 24335944 ~ 24336827 (-)
G14181 NA non-coding upstream 283550 24425164 ~ 24425498 (-)
G14213 NA non-coding upstream 460084 24601698 ~ 24602007 (-)
AMCG00016505 NA other downstream 238178 23864581 ~ 23885258 (-)
AMCG00016504 NA other downstream 260697 23841062 ~ 23862739 (-)
G13969 NA other downstream 423181 23699149 ~ 23700255 (-)
G13962 NA other downstream 667625 23455092 ~ 23455811 (-)
AMCG00016480 NA other downstream 3440412 20666142 ~ 20683024 (-)
AMCG00016531 NA other upstream 167642 24309256 ~ 24323458 (-)
AMCG00016538 smpx,LOC107721880,LOC107590224,LOC107663668,LOC107705278 other upstream 412078 24553692 ~ 24566956 (-)
G14305 NA other upstream 739534 24881148 ~ 24882098 (-)
AMCG00016562 rnf6 other upstream 866360 25007974 ~ 25015343 (-)
G14392 NA other upstream 938954 25080568 ~ 25083699 (-)

Expression


Co-expression Network