AMCG00016523


Basic Information

Item Value
gene id AMCG00016523
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24047820 ~ 24062602 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016523
ATGGAGGGGGTGCCCCGGGTTAACATGGTGAAGCAGCACTATGGGAATGACTTGGGGTTAAACATTGAAGAAATGGAGCGCTTGCTGACACCCTCCAATGACAGTGGGGTACAGGCAGGAATCACTATGAAGCAAGGTGGTGGAGAGCAGCCAGGGAGGCCACAGAGGCCGAGCTCCCTCCGGCTGCAGCAGGCATCGACGCCATTGGTGGAGGCCAGCAGCACACCTGAAGAAGTGAAGCTGAGCTCTCCTGTCGTCCTCAGTGGGAACTCAGTCAACATGGAGGAGCCCAAGGACAATGCTGTGCGCCCCAGGTCCTTGGAGCTGGACAGGCGGTTCGAGGGCAGGTCCTTCAAACGCTCCTCCCTCAGCCTTGACCTGAATGACAACGAAGACCAGGTATCGGAGAGGAGCATGTCTGACGTTCCTGAGGACGCTAATGACCACCTGGGTTCCAGTCCAGCCCAAGGCAGGCTGTTCATCAACCGGGTTTTCCACATCAGTGCAGAGAAGATGTTCGAGCTACTGTTCACCAACTCTCCTTTCACCCAGAGGTTCATGAACGTCAGGAAGATCACAGGGGTGGTGTCCAGCCCATGGCAGAGAGACAGCACCGGAGCCAAGAAGAGAACTCTGAATTACACCATCACCATCACAAACCCACTGGTGGGCAAGTTCTCCACTGCCACGGAAACACAGACCTTGTACAAGGACAGCCGGGAAGGGCAGTATTACATGGTGGATGCAGAAGTGTACACCCACGACGTGCCCTACCATGATTATTTCTACACCCTCAACCGCTACTGCATCATTCGCTCCTCCAAGCGCAAGTGCCGGCTACGCTCATCCTGTAGAGTTTCCTGTTGTGAGTTGGacctgctggaggaggaggccgAGCTGAACCAGAGCTCCGGAGACCCGGGGAAGCCGAGCGGGCTGCGGCGCCGACGGAGGACCTACAGCCGCTCTGTCTCGGAAAACCTCAACAAGCAAGGCATGCATTTCTCCGCAGGGGACCTGGGGGCCAGGGACAGCCCGACAGGAGGTGGCCTGGACTTGAAGGGAATGCAGAAATGGAATCTGACCAACATTGTAGCCAGTATGAGTGTAATCCTCCTGATCCTCACAGTGCTCAATGTCAGTCTGTTCTTCAAGCTGTGGGCCATGGAGGAAGTGGCTCACGGGATGCACCTGCGCACCAAGCTGCGGTTCCAGGAGAAGGCTGACCTGAAattgaCTCCAGATGCGAGTTCACGGCAGTTGCATCATCAGAAAAGCCCAGAAGAGCTACTGCTGCTGAGGACAGTGCTTCATGACTCCATACAGCTGCTGGAACAGCTGAGGACCTCGCTCGTGCTGCTGCAGAGGAATTTCGCAGTGCGCAATGAGACGGTGAAGGCGCCATGAGCCGAAGAAGAGGGAGTTCCTGCGAGGGCAGTGTAGAGGTGAATCCGTTTCTGTCAGCCCTTTGCAGCCTCTTCCGGGGTTTTTGCTTCAGGAGAATTCAGCCATTGAACTGAGTGAAGTGTCGCAGACGGGGTGATTTAACTGAGCAGTGTGTGATGGGAGGCCTCATTGTAGGTATTGTTAATAAGAGATTAAATGACCGcatggagattttttttaaagatatagaATGTATATATTCTACTTTTCCCCCCCAATTTGATTGAGATGAGCAAAGCAGGCCTCCAGTTTCTGacttctgtgttttttggtttagttttgtataatttgttctAGGTAGTTCAGTCACGGGGTGGAGATCTGCAGCGCCTCCAGCTGGACATTAAGGGCTGCAGCTGAAGGGCAGGGTCTTGCTGTGCAGTGTGGGAGCACAGTTCTTACAGTGGTTCACTCAATTATACTGAAAAgttctgctttatttatgtgaagaagctttttttttttttgcctctttCCTTCCTCCTTCCCCCTCCTTATTGGACATACAGTTCATACTGATCCAAAAGTGTGAAGTAAAGCTTGAATTTGTATCGATGCACCAGTGAAAGCATGCTCCGTTGTTTCGAAAGAGGGCTCTTTTATGGGTCGAGGGTACCGTTTTGTGGCTCGTCTACTGGAGCCACCGGTCCTTCCTGACCTGTGCGGGCTGCTCAAATAGGGAAGCCAATTGCCAGCTGTTCTCCTCTTGAGCCTTAAAAACCCTGAAGGGCCATTGAACAATTTCTCAGTCTATAATTCTCTTGCACTACACGGACCTGCACACCTGTGCCTCCGTTCGTTGCTGTGTAATAAAACCACTGTGATTGTATATTGAAGGAGAATTCTCTGCTTGCAGTTCTTCAGCATTATTTTAGGTCCAGGGAAAACCGGACAAGGCGTCTTAATGATTGCAAGAAAACTAATCTGCAAACCATAGATAAAGAAaagttttttggtttttaatgaatgtttgttttacttaaacagttttgatcattttattttttaactgttttaagtAATCATGTGTaagttttatttccattttgaaGTAGACAGATCTGTATTTGTCTAAGACAAAAGTACTGCAGCTCTTCAGATAAACCAGTTCTGGGAGAGTTCATGGTTTCCTGGTTTCTTGCTTTGTATTTCATAACAATGGGAAACGTATGGGTTCAATTTTGTATGTTCATGGACACCTTGATCCTTATATAGTTTTTGCACAACACTActgaatgtattatgtatgtgttttaagtTATTTCACAAGCCGTTAACGGAATCCATTAACGAACCAAACATCATGTATTTACTTCATTTTCTGTAGAAATGTTATTTCCcaacatgtgtatgtatgtatatatagagaaaatgtgtctgttttcagTGCTACAGATATCCAGAtgtttacattaaatcacaaagacCTTATCTGGTTTACAAAGCACAGGATGAcagaacaaaagacaaaacgCTTTCAAAGACAGTTTCTCCAGTGCCACTCTTGTATTTtctatatacaaaatatatagcttGTAAAAACTGTTTATAACATAAAATCAACCATGTAGAGTTTGTTATTTAGAACTGTTTAAGGAAGGTTAAGGCACTATACTGTCAATATGCAAGTTGCTGTTGtcaaataaagcatttgttCCCCTTATGATCTTTCAATTGCAttccaggcttttatttttacaaatccTTGTTGGGttaatgtatacaatgtattgatttcatTGGGATGATGTTCATGTTAAATGTACGCATCCCAGCAAAAGACCAGTGCATATTCGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016523 True 3244 mRNA 0.46 13 24047820 24062602

Neighbor

gene id symbol gene type direction distance location
AMCG00016517 NA coding downstream 8020 24029390 ~ 24039800 (-)
AMCG00016518 NA coding downstream 27029 24007888 ~ 24020791 (-)
AMCG00016511 NA coding downstream 96491 23945194 ~ 23951329 (-)
AMCG00016513 NA coding downstream 110586 23934903 ~ 23937234 (-)
AMCG00016514 NA coding downstream 116240 23927891 ~ 23931580 (-)
AMCG00016524 NA coding upstream 665 24063267 ~ 24068003 (-)
AMCG00016521 atp6v1a,atp6v1ab,LOC107584963,LOC107654231,LOC107701669,LOC107591235 coding upstream 10840 24073442 ~ 24092600 (-)
AMCG00016522 NA coding upstream 60834 24123436 ~ 24141614 (-)
AMCG00016525 LOC107580614 coding upstream 135283 24197885 ~ 24213659 (-)
AMCG00016526 NA coding upstream 153345 24215947 ~ 24243375 (-)
G14016 NA non-coding downstream 104442 23942044 ~ 23943378 (-)
G14015 NA non-coding downstream 106282 23941318 ~ 23941538 (-)
G14013 NA non-coding downstream 113353 23934166 ~ 23934467 (-)
G14012 NA non-coding downstream 113977 23933009 ~ 23933843 (-)
G13990 NA non-coding downstream 164861 23880959 ~ 23882959 (-)
G14092 NA non-coding upstream 84797 24147399 ~ 24147677 (-)
G14093 NA non-coding upstream 102555 24165157 ~ 24165420 (-)
G14171 NA non-coding upstream 273342 24335944 ~ 24336827 (-)
G14181 NA non-coding upstream 362562 24425164 ~ 24425498 (-)
G14213 NA non-coding upstream 539096 24601698 ~ 24602007 (-)
AMCG00016505 NA other downstream 162562 23864581 ~ 23885258 (-)
AMCG00016504 NA other downstream 185081 23841062 ~ 23862739 (-)
G13969 NA other downstream 347565 23699149 ~ 23700255 (-)
G13962 NA other downstream 592009 23455092 ~ 23455811 (-)
AMCG00016480 NA other downstream 3364796 20666142 ~ 20683024 (-)
AMCG00016531 NA other upstream 246654 24309256 ~ 24323458 (-)
AMCG00016538 smpx,LOC107721880,LOC107590224,LOC107663668,LOC107705278 other upstream 491090 24553692 ~ 24566956 (-)
G14305 NA other upstream 818546 24881148 ~ 24882098 (-)
AMCG00016562 rnf6 other upstream 945372 25007974 ~ 25015343 (-)
G14392 NA other upstream 1017966 25080568 ~ 25083699 (-)

Expression


Co-expression Network