AMCG00016525 (LOC107580614)


Basic Information

Item Value
gene id AMCG00016525
gene name LOC107580614
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24197885 ~ 24213659 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016525
ATGGACCCGCTGGCGCAGCCGGACCCGGTAGCGCAGGCCGAAGCGCAGGGGGCGCCGCTGGCAGCGTCTGACAGCACGGACACACAGCCGGCCTCTGCCCCGGAGCACTCGGAGCCCAGGGAGCCCACACCGCCGGCCAGCACGGCAGACACTACAGACGGAGCGGAGAGGGAGCAGCCGGGCGAGAGGGCCGGGGATGCCACGGAGGGCGGTGAAGGGGCCGCCCCAGGGCAGACGGGCAGTGACGCCCCAGGCGGACCAGGCCAGCCGGAGAGCCCGACACCAGAAGCTGCCGTAGAGGAGACCAGTGAGGGCGCAGAGAGTGGAGAGCCAGAGccgcctgctgctgctgctgcacaggaGGATGCTGGGACGGTGGCGCAGACAGGAGAGGCTGCTGCAGACGCTGATGCAGACGCTGATGACGCTGCGGATGGTGCCGAGCCCATTGCGATGGAGGAGGCCCAGGAGATGGGTATTCAGCCAGCAGGggagcagagggagggagaggacagCAGCCAACAAGCCACGCACATCCCAGAGGACTTCTACTACGACTACGAGGAGCTGCAGTCACGGCCTTTCGTGTCCCCGGACTCTGGCATCCCCCCTAACCTGCTGCGCCTCATGTATCCTTCCATCATGTATCGATGTAGTAATTCATGCACCAGACACTCGTTCGGCTACGACTGCAACAGGAGAGCCAACCTGCAACTACTGGACGAGCACACGCTGGGGTTCGTGGCCGGGAACCTGGTGGTGTTCCTCGACCTGCGCAGCAAGGAGCAGCGCTACCTGCGGAGTTGCAGCGGGGGAGGAATCGGCATCATCATGGTCCACCCCAGTAAGGAGTTCTTGGCAGTTGCAGAGAAGGGCAACCAGCCAGACATCATTGTATATGAGTATCCCTCGCTCCGGCCCTACAGGATTCTCAGAGGGGGCACAGCGGAGGCCTACAGCTTCGTGGACTTCAACAGCGCGGGCTCCCTGCTGGCCAGCGTGGGCAGTAGCCCGGACTACATGCTGACGCTGTGGGACTGGAGGCAGGAGCAGGTGGTGCTGCGCTGCAAGGCCTTTTCCCAAGACGTGTACAGAGTAACCTTCTCCACAGACAACCCCGGGCAGCTCACCACCTCCGGCTCTGGGCACATCAAATTTTGGAAGATGGCCAGCACCTTCACTGGCCTGAAGCTGCAGGGGATGCTGGGAAGGTTTGGGAAGACGACTCTGACTGACATCGAGGGCTATGTGGAGCTCCCTGATGGCAAGGTGCTGTCAGGCTCGGACTGGGGCAACATGCTGCTGTGGGAGGGAGGGCTGATCAAGGTGGAGATCTGCAGGAGGGGGGGGCAGCCATGCCACGCGGGGCCCATCCATCAGTTCGTGTGGGACTTCGAGGGCATTGACACTGCGGACGCGGAGAGCGACAGCGGGCTGTTCGAGATGGAGCCCATGAACGAGCTGGTGGTGGGCAAGGACGTCAGCCTGCTGTCCATGGTGAAGAGCTTCCAGCCAGACTCCCCCATCTGGTTTGCGCAGGATGCCAGTGGGGCCATCTGGAAACTTGACCTCTCCTTCACCAACACTACGCAAGACCCCGAATGTCTCTTTTCCTTCCACGCCGGAGGCATCCAGAGCATGGACACCTCGACCACCTCTCACCTGATGGCCACCACAGCACTGGACAAGTCTGTCCGGGTCTTTGATATCCTCGCCAAACAGGAGCTGACCGCCAGCCAATTCAAACGTGGAGGGACTACGCTGACCTGGGCCCCTCGCCTGGTGAACCCGAAAGGCGGCCTGCTGGTGGTGGGGTTCGAGGATGGCGTGGTGCGGCTGCTGGAGCTGTTGGACCCCCGGGGGCTGGCGGCAGTGGCAGGGAGGGGGCGCTACAATGGCGCAGAGTTGCGGCTCTTGCAGagcttggacagcacggTGTTCTTCTTCACGGTTGGGGAGAGATATGAGCCGGTTGGCTTCGTGAGGGTGCCCGGGCCGGTGAGGGGGCTGGAATGGTCTCCTCCTTCACATGAGAGGAGCACGTTGCTGGTCCTGTGTGAGAACGGCCATGTGCTGGAGATCATGACCCCTGAGCCCAAGGCCCAGAGTTCCGGCCAGACGTTCGAGATCCAGGGCCTGCCCTCCCGGCACTTCCACTTCTGCAGCATCAAGTCCCGCATCCTGAGAGATGCGGAGGTTGAGCGGCGGCGGGTGGCGAGGGAGCAGAGgcagaaggagagggaggcacGTCTGAAGAAGAAGCAGGAGCAGGGGCAGACGCTGACGGAGGAGGACCTGGCGGAGGAGACCGagccggaggaggaggagctgccCCCCCTGCACAGCCCTGAACCTCCCAGCCCCCTGCTCTGTGGTCTCTACTCCCAGCCTGGGGCCTTCTGGCTCTCTATGggtGGATATGACTCCGGCTTTCTGTACCACTGCAAGTTCTCGGAGCAGCAGGGCGGAGAGCAGGAGCCGCTGCAGAGGGCAGACGAGCCTTTCAGCTTCCTGCCGGTTCAGGACACTGACCGTGACCCCATCTGGACCATCAGCTTCAGCTCCAGTAGACAGCTGCTGCTGTGCGGGATGCAGAGTGGCCAGGTGAGACTGTACCCCCTGCCGCCCCACGGCCCCGACCTCGCCGCCATGCAGGGCTTCTGGGCGCTCAGCCTCCACGACAACCAGTACGGCCGCCTGCGAGCGGTGCGCTGCAGCCACGATGACCAGTTCGTGGTGACCGCGGGGGAGGACGGGAACATGTTCATGCTCAGCCTGCTCCCTGCGGAGGATCTCCAGGCGGCGCTGGAAAAGAAGGCCAGGGTGCCCTCCCCCCGACATCGAGATGGCGAAACAGAGGACAGAGCTGGAGCGCATGCAACGCGAGGCGGAGCTGCGCAGGGCGGGGCGGCGGCTGGAACTGGAGGAGCTGCGGAGTTTGAACTGGACCCACGGATCGTGCAGGAGTACGAGAGACTGATGGGCCAGAGGGTGCGTGAGACGTGCAGGGAGCTGGCCTGGGACCTGGAGAAGCACAGGGTCAGGCTCCAGAAGCTGCAGCAATGGTACTTGGACAACTTGGAGAGCAACACAGTGGCAGTTAAGGCCTTCCAGAGTGACCACATGGTGTTCACCTACCGCCTGCTGGCCCCGTCCCGAAAGCTGCAGCAGCAGAAGGATCAGGGCCGGAGACCCAGCCAGTTGGGCATGGAGCGCCGCCGCAGCCGGGTGGATTTCAGCCATGAGAGCAGCTATCCGGAGGCCATCCCAGAGGACGTGGACTCCGAGGACGTGCTGCTGCAGAGGCAGGGGACGCGAGGCGCGGGCAAGCTGAGTGGCCGCCAGGCGGAGAAGCTGCAGAAGGCCATGGAGAAGGCGGAGAGAGTACGGGCCAGGATCCAGAAGAGGAAGAATGAGTGGGAGGAGCTCTACTCCTCGAAGCCTGACGAGAACTTCGAGGACCCCCAGGATGTGCAGGCCATCCGCATGGCCCAGGAGAATATGGGTGACTTCAAGCTGAAGACGGCGAAGGACTTCACGGTGCCCGAGCACCTGCGCATGAACGCGGAGAAGAAACGAATGCAACTGGTGGCCCTGGAGGAGAAGATAAATGAGCTGAAAACGGACATGAACGACAAGATCATGGCCCTGCGCGACTTCAAGAGCCTGTCCATTGCGCACATCAAGGACTGCGTGCGCCAGCTCAGGGCAGTGCAGAGGCATCTGCCCCCCGCCAAGCGCCAGCCCTTGCCCAGCGTGCCCCGGCTGCTCCCAGAGGAGACACCCGAGAACAAGCTGCGCTGCACCAGAGCCAAACTGCTCAAGTACAAGGAGCTCAGAGCCAGGCAGGCCCGCACTGCgcagctggaggagagagagggagggttcGGGGGGCTGGGCAGCGAGCTGACTGCAAGccaggaggaggagcaggaggaggaagaagaggaggaggaccaGGAGGAAGATGACACCGGTGTCCCTACCCAAGACTCCCAAGGCCCGTCTGAGCAGCACGCCATCACCCCCTTTGACATGGAGGAGGAACAGCAGCAGGAAACCCAGAGCCTGTTCCTTCAAGGCCACCTGCTGAAGCAGCACATCACACTGTTCGAGGAGCTGCAGCTGCTGAAGGAGTTTGAGAAGAGCGAGAACACGTTGCTGGAGAGGGTCAACGCCCGCAGCCAGGAGGAACTGGAACTGCAGGGCAAGTACGAGGAGTgtcagcagcagctggaggCCAAGAGGAGAGACATTGCCAAGCTGCAAGAAAGGGACCGAGCCCTGACCACCACCTTCCAGGCCTCCCTGGGGGAGAACAACAAGTTTGCCGACTTCCTCACCAAGGTCTTCAAGAAGAAGGTGAAGCGTgcgaagaagaaggagaagaagggaGAGGAAGaggaggagctggagagcGAGGAAGAGTCCGAGGAGGAGTCTGAGTGGAGCGACGAGGAGCTGGACTCGGGCTCCGAGTCAGGGCCCCTGGACGACAGCGTGTGCCCGCCCTACTGTGACCCTGCCCTGTTTGAGAACACCATCCAGCTGCGAGAGAAGCGCCTGGACCTGGAGGAGGCGCtgctggaggagaagaaggcGGCCGACATCCTGAGGAAGGAGTGCGATTCTCTGACCAAGAAGATGAAAGTGGTCAGTGCCAGCCTGTCGACAGCAGAGGGCGACCTGGAGCTGCTCCAGCGGGAGAAGCAGCAGAAGCTGAACGAGCTGGACGTGATGCTGACCCTGCAGCTGCACCAGATGGAGTTTGTGAATTATAGGTCGATGCTAACCCAGGCGCTGGTGTTGGACAAGTCCGCTCTGGAGGCGCTGGAGCGGAGGATCCAGGAGCTGCAGCAGGAGAATAGGCAGCAGAGTGAGCTGTACCGCCAGGCCCGCCAGCAGCACGTCCAGCTCCTGCACAACCACAGGGACATGGAGGCCAAGATCCAGGAGCTGGAGGCCAGGTGTGAGAAAGTGATGCTGATGAAGTTTGGCCGGCTGCTGGACCTGGAGGCCCTGCAGATGCAGACCCTGTCGGTCAGCAGGaacctggaggagctgaagcaggagagcagtgagagagaggccATCTTCACCCACCAGCTGCAGGAACTGGAGGATGAGGTGCGCAAGGCTACGGAGGCCCAGACAGAGGGTGTGCAGCTGCCGGGCCGGCGGCTGGCGGAGCAGGACGAAAGGCGTCGGCTGATCCAGCTGGTGGAGACACAGGCGCAGGAGTCCCAGGCCCTGCGGCAAGAGATCAGCCTCCTGTCCCGCAAAGGGGGCCACATCCTGCCCCCCGCCcagcccccccagcccctgCAGGATGGCATAGGGAGGCCAGCCCACAGGGGAGGGCATAGCAACCCACTCAGCCGCCACTCGGTGCCGGCCACTGGACAGAGCCTCAGCTAGGCCTGCCTGCTGTGGAAAGATCACAGCACCGGTCTGTCCAGAGGTCTGGACGCTGGATAATATCACCAGAGAAT

Function

NR:

description
PREDICTED: cilia- and flagella-associated protein 44-like, partial

GO: NA

KEGG:

id description
K24224 CFAP44, WDR52; cilia- and flagella-associated protein 44

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016525 True 5492 mRNA 0.63 35 24197885 24213659

Neighbor

gene id symbol gene type direction distance location
AMCG00016522 NA coding downstream 56271 24123436 ~ 24141614 (-)
AMCG00016521 atp6v1a,atp6v1ab,LOC107584963,LOC107654231,LOC107701669,LOC107591235 coding downstream 105285 24073442 ~ 24092600 (-)
AMCG00016524 NA coding downstream 129882 24063267 ~ 24068003 (-)
AMCG00016523 NA coding downstream 135283 24047820 ~ 24062602 (-)
AMCG00016517 NA coding downstream 158085 24029390 ~ 24039800 (-)
AMCG00016526 NA coding upstream 2288 24215947 ~ 24243375 (-)
AMCG00016528 NA coding upstream 33523 24247182 ~ 24249577 (-)
AMCG00016527 NA coding upstream 36458 24250117 ~ 24270251 (-)
AMCG00016533 NA coding upstream 77035 24290694 ~ 24304314 (-)
AMCG00016530 NA coding upstream 124785 24338444 ~ 24354199 (-)
G14093 NA non-coding downstream 32465 24165157 ~ 24165420 (-)
G14092 NA non-coding downstream 50208 24147399 ~ 24147677 (-)
G14016 NA non-coding downstream 254507 23942044 ~ 23943378 (-)
G14015 NA non-coding downstream 256347 23941318 ~ 23941538 (-)
G14013 NA non-coding downstream 263418 23934166 ~ 23934467 (-)
G14171 NA non-coding upstream 122285 24335944 ~ 24336827 (-)
G14181 NA non-coding upstream 211505 24425164 ~ 24425498 (-)
G14213 NA non-coding upstream 388039 24601698 ~ 24602007 (-)
G14214 NA non-coding upstream 392449 24606108 ~ 24606321 (-)
G14218 NA non-coding upstream 402128 24615787 ~ 24618345 (-)
AMCG00016505 NA other downstream 312627 23864581 ~ 23885258 (-)
AMCG00016504 NA other downstream 335146 23841062 ~ 23862739 (-)
G13969 NA other downstream 497630 23699149 ~ 23700255 (-)
G13962 NA other downstream 742074 23455092 ~ 23455811 (-)
AMCG00016480 NA other downstream 3514861 20666142 ~ 20683024 (-)
AMCG00016531 NA other upstream 95597 24309256 ~ 24323458 (-)
AMCG00016538 smpx,LOC107721880,LOC107590224,LOC107663668,LOC107705278 other upstream 340033 24553692 ~ 24566956 (-)
G14305 NA other upstream 667489 24881148 ~ 24882098 (-)
AMCG00016562 rnf6 other upstream 794315 25007974 ~ 25015343 (-)
G14392 NA other upstream 866909 25080568 ~ 25083699 (-)

Expression


Co-expression Network