AMCG00016527


Basic Information

Item Value
gene id AMCG00016527
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24250117 ~ 24270251 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016527
ttcgtGGTAGGAAATAAAGAAGGATGTCAAGAAGGAGCCCCAAGCGCAGAAGCAGAAGGCTGAGCTCTCCAACGGCAGCCCGTCTCCCGCCGCTGAGCCCAGCCTGCGCCCCCCCAAGAAAGGTGAGGGCATTAGGAAAAGGAGATGCAAAGCGGCCTTCAGCTACATGCCGCAGAATGAGGACGAGCTGGAGCTAAAAATCGGCGACATCATCGAGGTCCTGGGAGAGGTGGAGGAGGGCTGGTGGGAGGGCACCCTGAATGGGAAAACGGGGATGTTCCCTTCCAACTTCATCAAGGAGCTGCCGCCGGAGCGGGAGGACCCCCCAACCCCTCAGGAGGATAGCAAGAGCACTAGGACGAgtcAAAAGGACAGCACCGGCTCAGAGAGCGACGGCGGAGACTCCAGCAGCGCCAGGTCTGAGGGAGGCAGTGTGTCCTCGGCCACAGAGATCCAGCCCAAGAAGATCAAAGGCTTCGGATTTGGGGACATCTTCAAGGACCAGCCCATCAAGCTGCGCCCACGCTCCATGGACTTGGACAGCGAGCTCAGCCTCCCCAACAGAcagcaaGTGGCGAAGAAGATGCCCCCTGGCTGCCTGCCTCAGGAAACTGCGAAAACGGAGCCGGAGAGTAAAGCCAAGGtGAAGGAGTATTGCAAAGTGATCTTCCCGTATGAAGCACAAAATGAAGATGAACTGTCGATCAAGGAAGGCGAGATCGTGGTCATTATCAGTAAGGAGTGTGCGGACGCAGGGTGGTGGATGGGCGAGCTGAACGGGAAGCAGGGCGTGTTCCCCGATAATTTTGTGAAGCTGCTCGCCCCCGATGTTGAGAAAGAGAGACCGAAGAAACCACCCCCCCCTGCCGCGCCCACAGGTAAGCAGAGCACAGGtaatccccccctccctcactgCGCCAGACTCCGCTGCAGAACCGCTTGATTGGCATGAtcaagttatacatttatacagatGATGTATTCAGAGTAAAGGGATTAGGCAACAAAgtgttctctctgtctctctctctctcgcttcctTGCCTCTGAACTGAATGTCCTCCAGTACCATCTCAGTGGTACTTCTGTAGCTTATTGCACAGGGAATCAGTTTGggtgtttatttgtaaatgtagtgGGTCCTGATTGTAACTGTTCCTCAAAGGAGGCATTCACTGATAGCATTTGTGTGCGTGTTGTCATCTCTATAAATGTTCATAAATCACTGTGTGGACTCTTCTCTAAATGTTTCAACAAGACAATGTGTTGTTGatcttgatttttttccctgtctGTACTAAAACAACCTCCCCCTCTTGTGCAACTGGCGTTTGTGAGCCTCATGCATCGAGCTGCACTGTGATTCAGACATGCATGTGCACTTTAACTCGTTCCCTGCTCCTCCACCTTGCGGCTCTAACCCCCGTGGGGATGGTCCTCATAGTATATCCAAAGCTTTGGAATGGCACCCCATCTTCACCCATCCCCCCCGAGGAAAGGAAAGCAAATCAGCTGCAACGCGATCACTCCACATGCCCGCCTCCAGCTCCGCAGCACTTAGCATGCAGCTACGGTGAGAGCAGGCACCCAAGTCGGCTGACGGCTGACCTAAATCACTGGGAGCacaatttgcatgttaatttaGCTCTGGGTCCGGGAGACTGCAGTTGCACGGTCGACAGAGCAGACAAAATGCAGTCCGTGCTCGCTGCACCATCCCCAGGGCCTCCGCCTCCTCCTGCAGAATTGCTCTGTAATGACCTCCTGGCTGTTCCTGTAATTGCCTCATAAAACAGAGTGTAAATTCCCCCGTCATTTCATTAATTCGATCGTTTTACATGCATAATAAATGGCCGAGCAGCCTGTTCAGACTGtcagagttttattttatttatttttaattttttccccctcgTTAATCCCCAGTGCAGGTTCTCCTCTGCACTGGAAAGGCTCCTGCGGTCACTCTCGCCCCCTGGTGCTGATCTTTGCTCTTCCTATCACCCTCCCCTCCCATGCGCGGTTCGTATCCCTCAGCCACCTTAGGCAGGAGCGGAAGGGGGAGGTTCTGTCCTGTGACCATCAGCCAGCCCCTCGGTGTGTAGCAGCTGGCCTCCTGTGCGGTCTACCCCCTGGTGGTCCAGGCATCACCCCCCAAGTCTCTGCAGCTGACAGCATTTGAGAATCGCTTACCTGCCATGAGTTTTTAACCATCCCCCCCCCACTAACCAGCAAGCGGGGCTCAAGGGCAACCCTGCATGCGCACACTAACCTCCCTACCAGACTAACCGAAACCTCCCGTCAGTCTGTCAATCACCCCTCCTCCCCAGTTGACCTGCCCACTGATAATGCCGTTGTACCAATTCTCAGACAAAAAGACGGACGTTAGAAAGGTGCCCCCGGAGCGTCCCGAGTTCCTCCCGCTCAGAGTAGAGGACAAAGCGTGCCGTGACCCGGCTGGGGCGGCACAGGACAGTGGCGTGGAAGGCCAACGTGCTGCCCCACAGCTCCCTGCCCCGCTGGAGTTATTAGATGATGACCAAGCAGTAAACATGAAGATACTTGGGAActttgagagtgtgtgtgtgggcgagTGGGCGAATGAGAAGCCAGAGAAGGATACAAAGGCCGCTGACATCCCCAGACCTGCCCTGCCAGCAGTGCCTCCCAAGAAACCGCTCCCCCCCAAGACCAACTCGCTGGGCCGCCCCGCTGCCCTGCCTCCCAAACGCCCCGAGCGCCCCGCCGTGCCCAGCATCAGgTGCGAGAGCCCGAAGACGGACGGCGGAGGGACGACGACTGCTGACCGCGGCTCCTCGGACAGAGTCAATGACATCGGGGAGAAGCCTGGCCGCCCCAGCGCACTGCAAGTCGATATCGAAGACTTCGACTCCATAGTGTCGACTGCGGAGAGGCTGAACCACCCCACCACGACCAGGCCACGTGTGACAGACAGACGGCCTCGATCACAAATCTTCACCTcgGATCGAGTGGGCATGGAGGGGGGGATGGATTCCTCACCCCAGCCCAATTCCCACTTGCTCCCCGGGCTCCTTGCTCTGATTGGGACCGGCTGGCCTCGCTGTGGGGAGGCAGAGCTGCTGCCCGTACTGCGCAATTCTTACAGGAACTGa

Function

GO: NA

KEGG:

id description
K12470 SH3KBP1, CIN85; SH3 domain-containing kinase-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016527 True 3134 mRNA 0.56 13 24250117 24270251

Neighbor

gene id symbol gene type direction distance location
AMCG00016528 NA coding downstream 540 24247182 ~ 24249577 (-)
AMCG00016526 NA coding downstream 6742 24215947 ~ 24243375 (-)
AMCG00016525 LOC107580614 coding downstream 36458 24197885 ~ 24213659 (-)
AMCG00016522 NA coding downstream 108503 24123436 ~ 24141614 (-)
AMCG00016521 atp6v1a,atp6v1ab,LOC107584963,LOC107654231,LOC107701669,LOC107591235 coding downstream 157517 24073442 ~ 24092600 (-)
AMCG00016533 NA coding upstream 20443 24290694 ~ 24304314 (-)
AMCG00016530 NA coding upstream 68193 24338444 ~ 24354199 (-)
AMCG00016532 NA coding upstream 85660 24355911 ~ 24363038 (-)
AMCG00016535 eif1ax,EIF1AX,eif1axb,LOC105905255 coding upstream 101818 24372069 ~ 24375807 (-)
AMCG00016534 NA coding upstream 105616 24375867 ~ 24392855 (-)
G14093 NA non-coding downstream 84697 24165157 ~ 24165420 (-)
G14092 NA non-coding downstream 102440 24147399 ~ 24147677 (-)
G14016 NA non-coding downstream 306739 23942044 ~ 23943378 (-)
G14015 NA non-coding downstream 308579 23941318 ~ 23941538 (-)
G14013 NA non-coding downstream 315650 23934166 ~ 23934467 (-)
G14171 NA non-coding upstream 65693 24335944 ~ 24336827 (-)
G14181 NA non-coding upstream 154913 24425164 ~ 24425498 (-)
G14213 NA non-coding upstream 331447 24601698 ~ 24602007 (-)
G14214 NA non-coding upstream 335857 24606108 ~ 24606321 (-)
G14218 NA non-coding upstream 345536 24615787 ~ 24618345 (-)
AMCG00016505 NA other downstream 364859 23864581 ~ 23885258 (-)
AMCG00016504 NA other downstream 387378 23841062 ~ 23862739 (-)
G13969 NA other downstream 549862 23699149 ~ 23700255 (-)
G13962 NA other downstream 794306 23455092 ~ 23455811 (-)
AMCG00016480 NA other downstream 3567093 20666142 ~ 20683024 (-)
AMCG00016531 NA other upstream 39005 24309256 ~ 24323458 (-)
AMCG00016538 smpx,LOC107721880,LOC107590224,LOC107663668,LOC107705278 other upstream 283441 24553692 ~ 24566956 (-)
G14305 NA other upstream 610897 24881148 ~ 24882098 (-)
AMCG00016562 rnf6 other upstream 737723 25007974 ~ 25015343 (-)
G14392 NA other upstream 810317 25080568 ~ 25083699 (-)

Expression


Co-expression Network