AMCG00016529


Basic Information

Item Value
gene id AMCG00016529
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24324950 ~ 24336827 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016529
CATAGCGTTCCACGCAACCCCTGCTCACACGAGCGCTTCCGGGTCACGCAGCGCCGACTTCCGGTCTGTGGGAGCGGGGCCGCCGTCCCGAGCCTCAGCGCCGCAGCTCAGCATCCATGTTTGTGCCCTCAAACGAAGCCGGCGTTGTGCTGCTTTGAACAAACGATCACATGCAAGACTAAAGCCACTGAACTGATTAACCGCATCCCGACAGTGAGACAGGCTGGTTTGGAGGAGGACGCACCTCCGCCGGGGACCGCACAGCGGGTAAACTTAATCATGTCCAGGCCACGATCAAGAAGCCCGGGTCGCGGTGATGGCAGACCAGGCTATTACCCTGAGGACAGTGGGACTGACCGGCGTCCGGTGAAGAGGGAGCAGTGGGAGAGTCACAGAGGGGCACGCCTTGGGTCTAGTGTCCGCACACTGCCCGACTGGGGGGACAGGCCGCGGGAGGACAGTCCCGCGCTGCTGGGCAGGGGGAGATTGGCGTCCGATGACACTGGTAGACTGTTTGCACACCGtcaccccctctcccccccatcccccacctGGCGGCAGCACTCACCCCTCGGAGATGCCCCCTGTTCTCCACCGGGGCATACCCACAGTTCCCACACCAACAGGAGGCTGCAGTCTCAGAACGTCCAGAGATTCTCGAAGGAACGAAGATTCCCTTCCCCAAGGCATACCCTGCCTCCCCCCAGCGAACGGAGGCCCCCGTCCCCAGCTCCTCTCCACGGCTCTGTGCTCCACAGGAGGGCCCACTCCCCCGAGCGGGATGGGGGCCGGCGGCGCCCTGGCCCCGCCGCGGACACACAGAGGAGCCGCTGCCAGGACAGAGCCCCACGGGCCAGGAGCCGCAGCCCCAGGGCCGGCAGGGAGGGGCCCAGAGCGCACTCCTTCGATCGCTTGGCCCGGGAGGAGAGGTGGATAGAAGGGGCTCCACCTCAGTCGCAAGCAAGGAAGTTTTCAGTTTCTCCTCCGAGGATCTTTGAAAGATTTGGCGGAAGGAACTCTTACCTGGACGAGTCCCGGAGTCGGCCTGCTCAGCCTGGGTGCCCTGAGGAGCCAGCAGTGGTGTTCAGGGAGCGCGGCCAATCGTCGGGATGTGGCGGAGATGCGAAGAGAGGGCAGGAGTGGCAGCCTCACGCAGGCCCTCGCTGCAGCCAGGAGGGGGGAAGAGAACGCAGGAACGGCAATGGGTGTGACAATCACAGGCAAGCCAGGCCGGGCTTCTGTGAGAGGGGAGAGCGTCCCCCGCCTGGGTTCGAGCCCGACCGTGGGTACCATGGAGAAAAGCCGGCGGAAACACGCCCCCAGGCCTGGAGCTGCCCGAGCCGAGGAGATGGAGACGCGGAGCCCTGGCCCAACAGAGCGGGAGCCAACATCCTGCACAGGCTGGGGGGCAGAGGCCAGCGGCAGGTGGGCAAGTCCTGGTTCCAGCATGGAGAGGGGCTGCCAGTCCGCCATGTCAACGGAGACGTAGACCTGAGGCGTCCCGCAGCCGAGCAGCCTAGAGTGAAGCTACCACACAGGGGGTCCGCATGTGGGCCGCGCCGCAAAGAGGAGCTGGGGGTCCGCAGGGAGGGAGACGGCCGGTCCCTGGGGGTCGGGCGCAGCAGCCTCGGGATGGAGTCCCAGGAGACACTCACCATCAAAGTGGACATGACACGCTCACTGGTCCAGTACAGGCCAGTGTCCTATTCCTCCGACAGACAGCTGTCTCTGGACTTGGTCAGCGTGGGGCAGCAGCGGCCGGACTTCCTGCCCATGCTGCAGCATTCGGGCTCCTACAGGGAACGGCCAGGGCCCTGCGGAGACTTCGCCCAGGAGATCATCACCCTCCTGCACCAAGTCAAAGAGACGTACTTCAGTACCGAAGGCCTCACTCTGAATGAGCGCTTTTCCTGCAGGCCGGGCCCTGAGGACGGGGCTCCCAGGATCAACCGGCGAATAGATGTTTCACTGTCGGACCTCAGAGCACAGAAGGTGTGCAGGGATGCTGAACGCTTGCAGAGCGGCCCACGGCAGATCAACGACCCCAATGACCTGCGGCACGGCCTAGAGCGACGCAGGCAGGCGCGGGAGATGGGCTCCTTCTCAGACGGAGGGTTCCCGGAGCGTCGGACGATTACCGACAGGAGTGACCGTGATTTTCGAAGAGGGAATGAAGAACACAATAACTTCTCCCTGGCAGACTGGCCGGGCAGCTCTGCAGAGAGCCAGGCTGGACACTGCAGGACAGAGACGGGAAGTGTGATGTGGAAGAAGCCCGGCTACGTCAGAGCAGGCCTGAACATCCAGAGCAGATACGGACGCCAGCAGCCCGTCCGGCAGAGCAGGACAAACCCACAGAGCCCACACCGGCCCCGGAGAGAGACTATTGGGCCCAACTGGTGAGGTGTGGGGAACCGCAGACGCTCGGGAGAGCTGTGGAGTCGAGGAGCTTTGCATTTATCGTCCCCAGAACGGCAGCATTCTCCGATGAATGTCGTCTTTATTTCATAGCGAAGTGTGTACACTTTATTTAGCATGCGGAATGAGCTGGAGTCCGTGCCGTGGCTCGTGTAGGTCGGCACGGGTGCGAGGCTGTGTGCAGCTCCGGGACACCAGGCACAGGAGGaaactggattttttgttgttgtttcggTCTTGGTTTTGCTGCTGGAGGAGGTCTCTGTATTGAAACCGTCGTTCTGTTGGTCTTGCCCTGTTGACTTGGCCCTGTCTGAATGACAGCAGCGTGGATCCAGTGTGGAGCGTGGAGGAGTCCGTTCATAATCCTCCGAGAGCGTCTGGGCAAGATGTCTTTCTGCCTcgtccctctctcccccagaGAGCAGGGCTGTCTGAGAAATAAACCTGAGAAGGGGGCTCTGCAGTGGCACAGAAAGAAGATGTATCGatgttataaatgtttttttttttttttttataaacactaAAAgataaactaaaacacaaaccacattGCTTGTGATTCCCTGGTACTTTGTTAGggaattctgtttgttttttgccatgTTCAGTGTAGACCATGTGATATTCTAATGTTCAGTTTTTCTAGCTGCATcgtgtttattcatttttttttttttttcgggggATGGGGGGGATAATATCAGTGGATTTCTATTGTTTTCATGTCTTGTCTGATGTTTTCAACgccatttattttcaagttatGGTATAAGACAGAAGTCGTATGAGCCAGTGGGTAAGACTGTCAGCAGTGGTGTAATAAAGGTCACTTCTGTCTGAACCTGGA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03015 mRNA surveillance pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016529 True 3271 mRNA 0.59 11 24324950 24336827

Neighbor

gene id symbol gene type direction distance location
AMCG00016519 NA coding upstream 206577 24104905 ~ 24118373 (+)
AMCG00016520 naa50,LOC107732992,LOC106590472,LOC106579447 coding upstream 223385 24089830 ~ 24101565 (+)
AMCG00016515 NA coding upstream 247664 24073722 ~ 24077286 (+)
AMCG00016516 NA coding upstream 294994 24022414 ~ 24029956 (+)
AMCG00016508 NA coding upstream 352109 23959304 ~ 23972841 (+)
AMCG00016536 NA coding downstream 232301 24569128 ~ 24580184 (+)
AMCG00016541 sms,LOC106603082,LOC107700049 coding downstream 245150 24581977 ~ 24597847 (+)
AMCG00016542 LOC107663624 coding downstream 264873 24601700 ~ 24617531 (+)
AMCG00016540 NA coding downstream 332385 24669212 ~ 24683200 (+)
AMCG00016547 NA coding downstream 363918 24700745 ~ 24712231 (+)
G14132 NA non-coding upstream 3631 24317800 ~ 24321319 (+)
G13979 lipt2 non-coding upstream 459150 23862215 ~ 23865800 (+)
G13953 NA non-coding upstream 977238 23347427 ~ 23347712 (+)
G13949 NA non-coding upstream 999190 23325560 ~ 23325760 (+)
G13943 NA non-coding upstream 1212785 23111926 ~ 23112165 (+)
G14136 NA non-coding downstream 143 24336970 ~ 24338848 (+)
G14127 eif1ax,EIF1AX,eif1axb,LOC105905255,LOC106563585,LOC106590461,LOC108411992 non-coding downstream 33499 24370326 ~ 24375827 (+)
G14177 NA non-coding downstream 82531 24419358 ~ 24419607 (+)
G14354 NA non-coding downstream 785256 25122083 ~ 25122392 (+)
G14363 NA non-coding downstream 807755 25144582 ~ 25144782 (+)
G14057 NA other upstream 214768 24080017 ~ 24110182 (+)
AMCG00016506 NA other upstream 379926 23938051 ~ 23945024 (+)
AMCG00016502 NA other upstream 442004 23866267 ~ 23882946 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other upstream 2492802 21782106 ~ 21832148 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 4445225 19875056 ~ 19879725 (+)
AMCG00016537 NA other downstream 142879 24479706 ~ 24561807 (+)
G14326 NA other downstream 671135 25007962 ~ 25010687 (+)
AMCG00016558 rpl21,LOC107591224 other downstream 743847 25080674 ~ 25085097 (+)
G14361 NA other downstream 796371 25133198 ~ 25133879 (+)
AMCG00016566 NA other downstream 813521 25150348 ~ 25157461 (+)

Expression


Co-expression Network