AMCG00016531


Basic Information

Item Value
gene id AMCG00016531
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24309256 ~ 24323458 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016531
GAAACAGCTGCAGCGGGTTTGTATCGCTGTGATCGGGCAGTATAGAACAGCAGTGACTGCAGAAGATGGCCAGACCTCGCTCCAGGTCTCCTAGACACAAGCACAGGTCCTACTCCAGCTCATACGGAAGTGCCCCGGAGCTCCAGGAGGGAATGCCGTTCGTGGGTCCCTGCGGGTCGGAGTCTCGTGACTACAGAGCCCAACCTGGAAGGCCTGTCCGCTGGAGAGATCCCAAGGGCAGCGGCCCCGCCCCCGGCTCCCACTACGAGAAGAGCGCTGCCAGGCCCATGTTGCCGGATGAGCGCAGGGCTCCCGCAGAGCCGTTCCATCGGCCCACCCCCCCGTGGAGGGTGCAGTCGGGCTCGTATCACGGATACCCCCCCCAGCCCCGGCACCACTCACCAGGGCCTTATCACAGCCACCGGAGACTCTCACCCCCCAGGCCAgcacaccccccaccaccaccgcGCAGGCTGTCCCCCTCAGGGCCAGCGCATGGACCTGCTCCTCACAGGAGGCCCTCACCCAGAGGCGCGTTCCACGGGCCCAACTTCAACCGGACCCAGCGTCCCTCCTCTCCAAGACACTTCCACGGCCCCCCCGGCAACCGGAGGCCCCCATCCCCAGCACCTCTCCACGGCTTTGTGGCCCACAGGAGGGCCCACTCCCCCGAGCGGGACGGGGGCCGGTGGCGCCCCGGCCCCCCCGCTGACCACCAGAGGAGCAACTGCCCGGACAGAGCCCCACGGGGCAGGAGCCGCAGCCCCAGGGCCGGCAGAGAGCGGCCCAGAGCACACTCCTTCGATCGCTCGGCCCGGGAGGAGAGGTGGAACGGGGGGTTGCACCTCAGCCCACGGCACTCCCGAGAGAGGAGGTATTCTGCAGAACGGGAGCTAAGAAAGCACAGCGAGACGacagaaaatagaaatgcaGAGTGGGGCGAGGCGACACACCAGTACTGGTCCCCGAAATGGAAAGCCGACCCCTCTTCACCCAGATACCACCAGGAGAGGGCCGGAGACGCCAGGAGGGAAGTCCATCGCCCACTGAAGTGCCGCGGCCGTGAAGgccgctcctcctcctcctcctcctcctcctcctcctgctcggCCAATGCCCAGATTGGACGCAGTCTCAAGTACCCGCGGGGGGATATGCCAGATCGCTTTCAGAAGCCCAAGTCATTCGGGAGCAGGGAGACGGAAGGCAGCTCGGCGTCCTCTCACAGCAGGGACGAGGCCCAGCTGAAGGGGAGGAAGAAGAGGCCGGTTCTGGTGGGAGGGACAAAGGCCTCGCCACCGCAGCACAGGGAGCCGGAGAAGGTGCTCAAGAAGCACAGCAAGCTGCCCGGGAAAGACGTGGCCTCCTTGCGACTGTCTGTTGCCAAGCAGAAGGTGGTGAACAAGCTGAGGAGTACAGCAGCCCTGTCTAAAGCGCCGCCGCCACCGCAGGGGAAGACCACTGGGAAGAAGAACCAGAGGAAACCTCACCACAAGCTTCCTCTCACTGGCAGCTCCACAACAGACGAAGGGGCGGCACAAACGGAAACGTTAACGATCAAAGTGGACACGCGGCACTCCATGACACGGTACAGCTCCTCTGCCcactcagacagacagctcTCACGGGACCTGGTGACCGCGTCCAGGCTGGCCTCAGAGCTGCAGCCCAGGGTGAAGCATGTGGGCCCCTGGAGAGAGCGAGCCCTGAAGAACCAAACAGAGAACTACTTCAGGCACGATAATCTGACTTTGAACGAACGCTTCTCCAAGCTGCACTACTCCAAGAGCTTCAGTCAGGAGGATGGGAGACGCTACTCCGGCTTGAAGATTAGCAGACAGATCGAGTTGCCGTCGCCGAACCACAAAGAGATGAAACCCGTGAAGAAAATTGGACCGACGCAGCAGAGCAGTTTCCACTCTGGCAGTCCCAATCATAGACCTGCTCACCTCATCAAGAATTCTGTTGTGGAAAGCCCTGGACACTTCCGGCACTTCAAGAAGCCCCTCATGGGCAGCCTGTCTCTGCGGCTCGGGGTGCAGCAGAAGCCTGTGTTCAAGAAGAGCCTGAGCATCCAGTCTAAGTACAGGAACCTGCAAAGAAGAACTTGCCATGCCAGAGGACATAGGGACCCTGTCGGGGGCCCGTCCAGGCGCTCGCTGCGCTGGGACACTCAGTCCTGCTCCGTCCTGTCTCCAGCTGCtgaacatgttattttaaatgaaatagaaaTTAGGTCTGAACTGCACCCTGTGCACACGAAGAATGGAAACTCAGAAGTGAGGAGAGCCTCCTACAGAGTAGTGACAATTTCTCCTGTAGTGAGCGCCACCATGCCTTCTACACAGGGCCGTCTCCTGCTGCTCTATATATGTAAGATGGGGCTCCCTGTGTCACGTGATCCACTTGAGGTTTTCTCCATCGTGTTCATCAACACGcagcagcaggccgTGCAGGTCTCCAGCCCTGACGGACCACACAACAGCACCTATAGGTCCTCTCTGAATCCTCGGCAGCTGAAGAACTGGGGATCCTGTTTATTCTGGGCCAGTCGAGTCAACAACAAGCCGAAGCAAAGAGCCCAGGTGGTGAGGGAGCCTAAAGTTACCACAGTTCCCCAGGACTGCAGATCTGATACTCTGCATGTCAGGCCCATTGCAGCCCTGGAGATCCATAGTTCCACAGGTTTTCCAGATCCGGTGACGGCTGTGTTTGACGTCAGTGAGGTGCGGAGGAGCCAGCAG
>TU17551
NNNAAACAAATATGGCCGCTTGCACTCGTCCCAGGGACCGTATTGACAAAGCTCCCTGGCATGCATGGACACGGGATAAAATGACTGCAGCCCACAGGGCAGGCTCAGGAGTATTTAAGGAGTGCATAATGGACAGACCCCTGGTTCGGCTCAGTCAGGTCTCCAGGCAGCAGTGGCAGTGTCGGTCTATAGACCTGCGGGAGCCAAGACCCCCCACAGTGGAAATCCTTGGGGAAAGAGCAGCTTGATCTTTTCATAACCAGCCTCATACATTATGTCTCTGTGTTGGCGTTCTTGCGCCCCAGAGGGAGGGAAGGTCTGCCTCTCTCCCGTCAGAGTGGCCCGGCTATCTTGGTCCTGGGTGGTTAATATACAGCCGCTGGGAGCTGGTGTGTCTCCTCTGCCcactcagacagacagctcTCACGGGACCTGGTGACCGCGTCCAGGCTGGCCTCAGAGCTGCAGCCCAGGGTGAAGCATGTGGGCCCCTGGAGAGAGCGAGCCCTGAAGAACCAAACAGGTGACTTTGACCAGGACCTCATCACTTTAGTCCACCAAGTGAAAGAGAACTACTTCAGGCACGATAATCTGACTTTGAACGAACGCTTCTCCAAGCTGCACTACTCCAAGAGCTTCAGTCAGGAGGATGGGAGACGCTACTCCGGCTTGAAGATTAGCAGACAGATCGAGTTGCCGTCGCCGAACCACAAAGAGATGAAACCCGTGAAGAAAATTGGACCGACGCAGCAGAGCAGTTTCCACTCTGGCAGTCCCAATCATAGACCTGCTCACCTCATCAAGAATTCTGTTGTGGAAAGCCCTGGACACTTCCGGCACTTCAAGAAGCCCCTCATGGGCAGCCTGTCTCTGCGGCTCGGGGTGCAGCAGAAGCCTGTGTTCAAGAAGAGCCTGAGCATCCAGTCTAAGTACAGGAACCTGCAAAGTCTGCGGCAGCGCGGGCCACACGGCCGGGGGGCAGGGTCCCGCCGCTGGTGACCGCTCTCCTGACATTCAGGAAGAACTTGCCATGCCAGAGGACATAGGGACCCTGTCGGGGGCCCGTCCAGGCGCTCGCTGCGCTGGGACACTCAGTCCTGCTCCGTCCTGTCTCCAGCTGCtgaacatgttattttaaatgaaatagaaaTTAGGTCTGAACTGCACCCTGTGCACACGAAGAATGGAAACTCAGAAGTGAGGAGAGCCTCCTACAGAGTAGTGACAATTTCTCCTGTAGTGAGCGCCACCATGCCTTCTACACAGGGCCGTCTCCTGCTGCTCTATATATGTAAGATGGGGCTCCCTGTGTCACGTGATCCACTTGAGGTTTTCTCCATCGTGTTCATCAACACGGTTTGAAAAAGGATTTTAAAGGAGTTTTGGCCAGATGtttcactgttttgtttgtttttggttcttCCCTTCCTGGGCTTTCTAGATTGTGGATAAATTTGCTGtacacagctttttaaaatagtttaaaaagtcTGATTGTTAAACTGAAGTTCACGGTGTTCGTGGATACGTTTTGTCacctgtgtgttgctgtgtctgTTGGACTTTTGAAGAATGTAATAGTTTTCTAAAATGCTgttcctattaaaaaaaaaaaacacaatgatgtGCATTTCAAATTTGGCAAATTTCAGTGAGAAGCAGTTGGTTCTAATGTAATGTTTCCCTGAAAGCTTATTTCTAGAGGATTGGATGACCCACATGATGTCATCGAAGGAGCTTCCGATATTTGCAACACAAGACTAAACTATTCTCGGAAGAAATGATGCCCTTTGGAAACAGCCACTGTCGGTATGATCAGTGCAAGCCAAAACTGTGTTAGTCAGCTAAATAAAACTTCTTTTGTTAATGAA
>TU17553
NNNAAACAAATATGGCCGCTTGCACTCGTCCCAGGGACCGTATTGACAAAGCTCCCTGGCATGCATGGACACGGGATAAAATGACTGCAGCCCACAGGGCAGGCTCAGGAGTATTTAAGGAGTGCATAATGGACAGACCCCTGGTTCGGCTCAGTCAGGTCTCCAGGCAGCAGTGGCAGTGTCGGTCTATAGACCTGCGGGAGCCAAGACCCCCCACAGTGGAAATCCTTGGGGAAAGAGCAGCTTGATCTTTTCATAACCAGCCTCATACATTATGTCTCTGTGTTGGCGTTCTTGCGCCCCAGAGGGAGGGAAGGTCTGCCTCTCTCCCGTCAGAGTGGCCCGGCTATCTTGGTCCTGGGTGGTTAATATACAGCCGCTGGGAGCTGGTGTGTCTCCTCTGCCcactcagacagacagctcTCACGGGACCTGGTGACCGCGTCCAGGCTGGCCTCAGAGCTGCAGCCCAGGGTGAAGCATGTGGGCCCCTGGAGAGAGCGAGCCCTGAAGAACCAAACAGAGAACTACTTCAGGCACGATAATCTGACTTTGAACGAACGCTTCTCCAAGCTGCACTACTCCAAGAGCTTCAGTCAGGAGGATGGGAGACGCTACTCCGGCTTGAAGATTAGCAGACAGATCGAGTTGCCGTCGCCGAACCACAAAGAGATGAAACCCGTGAAGAAAATTGGACCGACGCAGCAGAGCAGTTTCCACTCTGGCAGTCCCAATCATAGACCTGCTCACCTCATCAAGAATTCTGTTGTGGAAAGCCCTGGACACTTCCGGCACTTCAAGAAGCCCCTCATGGGCAGCCTGTCTCTGCGGCTCGGGGTGCAGCAGAAGCCTGTGTTCAAGAAGAGCCTGAGCATCCAGTCTAAGTACAGGAACCTGCAAAGTCTGCGGCAGCGCGGGCCACACGGCCGGGGGGCAGGGTCCCGCCGCTGGTGACCGCTCTCCTGACATTCAGGAAGAACTTGCCATGCCAGAGGACATAGGGACCCTGTCGGGGGCCCGTCCAGGCGCTCGCTGCGCTGGGACACTCAGTCCTGCTCCGTCCTGTCTCCAGCTGCtgaacatgttattttaaatgaaatagaaaTTAGGTCTGAACTGCACCCTGTGCACACGAAGAATGGAAACTCAGAAGTGAGGAGAGCCTCCTACAGAGTAGTGACAATTTCTCCTGTAGTGAGCGCCACCATGCCTTCTACACAGGGCCGTCTCCTGCTGCTCTATATATGTAAGATGGGGCTCCCTGTGTCACGTGATCCACTTGAGGTTTTCTCCATCGTGTTCATCAACACGGTTTGAAAAAGGATTTTAAAGGAGTTTTGGCCAGATGtttcactgttttgtttgtttttggttcttCCCTTCCTGGGCTTTCTAGATTGTGGATAAATTTGCTGtacacagctttttaaaatagtttaaaaagtcTGATTGTTAAACTGAAGTTCACGGTGTTCGTGGATACGTTTTGTCacctgtgtgttgctgtgtctgTTGGACTTTTGAAGAATGTAATAGTTTTCTAAAATGCTgttcctattaaaaaaaaaaaacacaatgatgtGCATTTCAAATTTGGCAAATTTCAGTGAGAAGCAGTTGGTTCTAATGTAATGTTTCCCTGAAAGCTTATTTCTAGAGGATTGGATGACCCACATGATGTCATCGAAGGAGCTTCCGATATTTGCAACACAAGACTAAACTATTCTCGGAAGAAATGATGCCCTTTGGAAACAGCCACTGTCGGTATGATCAGTGCAAGCCAAAACTGTGTTAGTCAGCTAAATAAAACTTCTTTTGTTAATGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016531 True 2744 mRNA 0.61 12 24309256 24323458
TU17551 False 1871 TUCP 0.50 7 24311037 24316802
TU17553 False 1826 TUCP 0.40 7 24311037 24316802

Neighbor

gene id symbol gene type direction distance location
AMCG00016533 NA coding downstream 4942 24290694 ~ 24304314 (-)
AMCG00016527 NA coding downstream 39005 24250117 ~ 24270251 (-)
AMCG00016528 NA coding downstream 59679 24247182 ~ 24249577 (-)
AMCG00016526 NA coding downstream 65881 24215947 ~ 24243375 (-)
AMCG00016525 LOC107580614 coding downstream 95597 24197885 ~ 24213659 (-)
AMCG00016530 NA coding upstream 14986 24338444 ~ 24354199 (-)
AMCG00016532 NA coding upstream 32453 24355911 ~ 24363038 (-)
AMCG00016535 eif1ax,EIF1AX,eif1axb,LOC105905255 coding upstream 48611 24372069 ~ 24375807 (-)
AMCG00016534 NA coding upstream 52409 24375867 ~ 24392855 (-)
AMCG00016539 NA coding upstream 224919 24548377 ~ 24550125 (-)
G14093 NA non-coding downstream 143836 24165157 ~ 24165420 (-)
G14092 NA non-coding downstream 161579 24147399 ~ 24147677 (-)
G14016 NA non-coding downstream 365878 23942044 ~ 23943378 (-)
G14015 NA non-coding downstream 367718 23941318 ~ 23941538 (-)
G14013 NA non-coding downstream 374789 23934166 ~ 23934467 (-)
G14171 NA non-coding upstream 12486 24335944 ~ 24336827 (-)
G14181 NA non-coding upstream 101706 24425164 ~ 24425498 (-)
G14213 NA non-coding upstream 278240 24601698 ~ 24602007 (-)
G14214 NA non-coding upstream 282650 24606108 ~ 24606321 (-)
G14218 NA non-coding upstream 292329 24615787 ~ 24618345 (-)
AMCG00016505 NA other downstream 423998 23864581 ~ 23885258 (-)
AMCG00016504 NA other downstream 446517 23841062 ~ 23862739 (-)
G13969 NA other downstream 609001 23699149 ~ 23700255 (-)
G13962 NA other downstream 853445 23455092 ~ 23455811 (-)
AMCG00016480 NA other downstream 3626232 20666142 ~ 20683024 (-)
AMCG00016538 smpx,LOC107721880,LOC107590224,LOC107663668,LOC107705278 other upstream 230234 24553692 ~ 24566956 (-)
G14305 NA other upstream 557690 24881148 ~ 24882098 (-)
AMCG00016562 rnf6 other upstream 684516 25007974 ~ 25015343 (-)
G14392 NA other upstream 757110 25080568 ~ 25083699 (-)
AMCG00016579 NA other upstream 941314 25264772 ~ 25277478 (-)

Expression


Co-expression Network