AMCG00016538 (smpx,LOC107721880,LOC107590224,LOC107663668,LOC107705278)


Basic Information

Item Value
gene id AMCG00016538
gene name smpx,LOC107721880,LOC107590224,LOC107663668,LOC107705278
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24553692 ~ 24566956 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016538
ATGCAGTTCCTTTTCCTCCTTACAGTGATACTACAAGTAGTCCGCCTCATGGCCCCCAGTATAGCGAGTGACTGTGCGCCGCACTCCTCCGCCACCTCCTCTAGCCTCGGCTCCCCTTCTCCTCAACTGACATCTGAGCCCCTCCCTCTGGAGCCTGGGCCCTCTGCCTCTCCCACTGCCTCTCTAGCTGCAGGAGAGACAGGCCCCTCCGTGTATCAAAGGCTATATTTAGGAAGAACAAATGCAAGTAATGAGAGGAATCCCTTTGCAAGTGCCTACCAAACTGCCTTCAGCCCAGAGAGAGCATCAGccctgagcagcagcactgttcACTCCCAGATCCAGGAGAGGCTTGTGACCCGTTCTCCTAGTCCAGCCCTGTGCGTCCAGGACTCCGGACTTCCCTGTGCAAAAATGTCCAAGCAGCCGTCATCCAACGTCAAGGCCTTGCAGGACTGGGGCCGGGCTGGGAGAGCTGTTCAGAGACTCAAGACAGACTGCAAGAACTCCACTGCATTCTAACAGCTTCGTAAAACTGTCTATAAAGATGAATGACTACCTTCTATAGACCCTGAGCAGGGGCTGGCATCCCATTCAAAAGCAATTtagtaagaaaataataataataataataataataataataataataataataataataataataataataatcattgttaAATATACCAGTGAGTGGCCCATGTTTGAGAGCCTGCCCCAGACGAGCCTTtgagaaatattttttgttatcaaCTTAATCCTGCTGAAAATTGAATGTCTATTTTTAACTATTAggctataaatataattataaaaataaatatatacaaatctatATCTAACTATATATAGGGAAGTTATTCTGGTGATGTCTGAGGCACTGTAGCCCTTCACAGACACATGGAAATATGCATGTAGAAGCTTTTTGCAACACCAAACACCTCAGAGGTGCCCCAGGGATACAGTGTGGACTAAAGCTCCACAATTCCCtttcatacaaatataattttgcatGCTTAGTTAAGCTTAAATTCCTGGGAAAATACAGCCCCTATCATTTGCACACAGCAGTGAAGGTCCAGGCGTGTCCTAATTCGCCACAGACAGACTCAGAGGGATCAGGATGGTGGGCATTAACACATCcactgcctgcctgtctgcctgccttCAATATTTCCTTGGGATTGTCTGCTTACACATCAACTGCATTGTTTATAACCTGCTGACAGGAAACAAGGGGAAGATTTCAACTGCATGTTTTTTAGACTGGAGCAAAATGTAGACGGTGATAAGCAAGcaagcacactgacacactgacacactgactgactgacacactgacacactgactgactgattgactgaccgACTGTTCTACAGAAACCACATGCAATGCTTAAACAATTCACTTcttgacttttttatttactCTGAGAGATTTTCCACTTTAGGTTTGACAAACACAATCAGTGACACCCCACCTCTGGGCTTTAAGGTGTCATGCCCCCCAGTGGCTGCTGCAGCTCAGTGCTCTGTAACACAGGCTGGGCTATTGACCACGAATCGGCAACATGTGGCCCAGACAGCCATCTCCAGTGTCAGTGCCTTGTAGCTTAAAAACATCCCAGGTATTTCCAGCCCTCAGCTAAAAGCTTTCTGTGAACAGCAGGGCACTCAGAAGAAGGAATTCTCAGTTCATTGTGTTccttttattatcattactacATTTCTGTGTTTAAGCATGCTAATGTAAAGCTTATCTTTATAAGTTATAGCTGAAGAGTCGCATCCAGCTAtccctgtgttgtgttttcggCGTTACAATTTCACTGCTTGATTGTGCTGAATATTTTATCTTCactgttgtattattgttattattgcagATATTATTgttctgatgatgatgattactaTGTCACTGTTGTAAGTCCTGTTGCGAGAAGCACAGAGATATTTGTCTTTAGTTTCAGCATTTCATAGGTCATTAATTCGGGCTGGAGGTTTTAAACAAGACTCAAGTCGCTAAGCAGGATTTTCAGTTCTAATACCTGGGTGGCTGCGTACAAATACACAGCATTGAGAATGAATACTGTttcatattgtgttttattatatcaGAAATCGATCTGTGTGTAGTTTTTTGTGTACTAGAGAATGTGAAAGCAGGGATATGTTCAACTGCGCTTCTCTCTGTGCTCGTCCAGGTCCACAATCATCTCTTGCTGTACTTGCTGTAAACCAGTCATTCGTTTCTGCCCCTCAGGAGATAAAACCCTAAAAGTACGGCATCTTTAAGGTTACATGTCATTCATGCTTCAGAGCAGCAATTTGTCTCTCTACAAAGCCGGTTACCTAAGATTTAGGTAAACACATAGAGATAATATCTGGTGAATGGGGGATTGTAGGAGGTCTGATTGACTCTGTAGTGCCGATGACTTTCATTAGACTCCTTTATTAAAATTGGAAATACAAAACCGGAATTGGAATAAATCTGTTCTCATCCTGAAAGCCAGCCCACTCCCTCGGACTCCCTCTGTAAGGAGAAGTGTTATCCCCACACTGCAGAGGAGAGCGTATTGGGAAACAACCCCTCAACACAACCTGCAGCCTCCACAACCTGAGCAGAAGCTGTGAAGAGCAA
>TU17593
CTCCTCCGCCACCTCCTCTAGCCTCGGCTCCCCTTCTCCTCAACTGACATCTGAGCCCCTCCCTCTGGAGCCTGGGCCCTCTGCCTCTCCCACTGCCTCTCTAGCTGCAGGAGAGACAGGCCCCTCCGTGTATCAAAGGCTATATTTAGGAAGAACAAATGCAAGTAATGAGAGGAATCCCTTTGCAAGTGCCTACCAAACTGCCTTCAGCCCAGAGAGAGCATCAGccctgagcagcagcactgttcACTCCCAGATCCAGGAGAGGCTTGTGACCCGTTCTCCTAGTCCAGCCCTGTGCGTCCAGGTGGGAAAACTGCACTCAAAGGCTTTACAAACCTGTGCCATTCTGCATTCAGGACTCCGGACTTCCCTGTGCAAAAATGTCCAAGCAGCCGTCATCCAACGTCAAGGCCTTGCAGGCCAACCTCAATATCCCGATGGGGGGTCTGCGTCCGGGAGTGGGACATCCTgtgaagaggagagaggagtcAGTGGAAGCGGAGGAGCACATTCCCGCCGATGTGGTCGCAGAGAAGAAGCAGCCGCAGCTCCCCGGGGCGGTCAAGCTGCCTGGACCAGCGGTCAACCTGTCCGAGATCCAGAACGTGAAGAGCGAGCTGCGATGGGTGACTAAAGACTAAGGCAACAGGACTGGGGCCGGGCTGGGAGAGCTGTTCAGAGACTCAAGACAGACTGCAAGAACTCCACTGCATTCTAACAGCTTCGTAAAACTGTCTATAAAGATGAATGACTACCTTCTATAGACCCTGAGCAGGGGCTGGCATCCCATTCAAAAGCAATTtagtaagaaaataataataataataataataataataataataataataataataataataataataataatcattgttaAATATACCAGTGAGTGGCCCATGTTTGAGAGCCTGCCCCAGACGAGCCTTtgagaaatattttttgttatcaaCTTAATCCTGCTGAAAATTGAATGTCTATTTTTAACTATTAggctataaatataattataaaaataaatatatacaaatctatATCTAACTATATATAGGGAAGTTATTCTGGTGATGTCTGAGGCACTGTAGCCCTTCACAGACACATGGAAATATGCATGTAGAAGCTTTTTGCAACACCAAACACCTCAGAGGTGCCCCAGGGATACAGTGTGGACTAAAGCTCCACAATTCCCtttcatacaaatataattttgcatGCTTAGTTAAGCTTAAATTCCTGGGAAAATACAGCCCCTATCATTTGCACACAGCAGTGAAGGTCCAGGCGTGTCCTAATTCGCCACAGACAGACTCAGAGGGATCAGGATGGTGGGCATTAACACATCcactgcctgcctgtctgcctgccttCAATATTTCCTTGGGATTGTCTGCTTACACATCAACTGCATTGTTTATAACCTGCTGACAGGAAACAAGGGGAAGATTTCAACTGCATGTTTTTTAGACTGGAGCAAAATGTAGACGGTGATAAGCAAGcaagcacactgacacactgacacactgactgactgacacactgacacactgactgactgattgactgaccgACTGTTCTACAGAAACCACATGCAATGCTTAAACAATTCACTTcttgacttttttatttactCTGAGAGATTTTCCACTTTAGGTTTGACAAACACAATCAGTGACACCCCACCTCTGGGCTTTAAGGTGTCATGCCCCCCAGTGGCTGCTGCAGCTCAGTGCTCTGTAACACAGGCTGGGCTATTGACCACGAATCGGCAACATGTGGCCCAGACAGCCATCTCCAGTGTCAGTGCCTTGTAGCTTAAAAACATCCCAGGTATTTCCAGCCCTCAGCTAAAAGCTTTCTGTGAACAGCAGGGCACTCAGAAGAAGGAATTCTCAGTTCATTGTGTTccttttattatcattactacATTTCTGTGTTTAAGCATGCTAATGTAAAGCTTATCTTTATAAGTTATAGCTGAAGAGTCGCATCCAGCTAtccctgtgttgtgttttcggCGTTACAATTTCACTGCTTGATTGTGCTGAATATTTTATCTTCactgttgtattattgttattattgcagATATTATTgttctgatgatgatgattactaTGTCACTGTTGTAAGTCCTGTTGCGAGAAGCACAGAGATATTTGTCTTTAGTTTCAGCATTTCATAGGTCATTAATTCGGGCTGGAGGTTTTAAACAAGACTCAAGTCGCTAAGCAGGATTTTCAGTTCTAATACCTGGGTGGCTGCGTACAAATACACAGCATTGAGAATGAATACTGTttcatattgtgttttattatatcaGAAATCGATCTGTGTGTAGTTTTTTGTGTACTAGAGAATGTGAAAGCAGGGATATGTTCAACTGCGCTTCTCTCTGTGCTCGTCCAGGTCCACAATCATCTCTTGCTGTACTTGCTGTAAACCAGTCATTCGTTTCTGCCCCTCAGGAGATAAAACCCTAAAAGTACGGCATCTTTAAGGTTACATGTCATTCATGCTTCAGAGCAGCAATTTGTCTCTCTACAAAGCCGGTTACCTAAGATTTAGGTAAACACATAGAGATAATATCTGGTGAATGGGGGATTGTAGGAGGTCTGATTGACTCTGTAGTGCCGATGACTTTCATTAGACTCCTTTATTAAAATTGGAAATACAAAACCGGAATTGGAATAAATCTGTTCTCATCCTGAAAGCCAGCCCACTCCCTCGGACTCCCTCTGTAAGGAGAAGTGTTATCCCCACACTGCAGAGGAGAGCGTATTGGGAAACAACCCCTCAACACAACCTGCAGCCTCCACAACCTGAGCAGAAGCTGTGAAGAGCAACGCAAGACAAAACTGAAgaatcaacacattttcagagcttttttaaattgtatttattttatttcacttctaAACCTCAGGTGTAAGGGTGGTAGTAAGGTTTGTTTACATATGTGGTGCAAGGCTGAACTATAGGCTGTGTGTCGACTTGgttatggtttaattttgttgtataaatattttcagttaGAGGTTTCTTTCAGAGGGTCCATTTGAAAGTGTCCTTAATTGTGAATTCTGGCAATATACTGTATTACATCTGAACAAGGGACTGCTGCACTGACCTTGTTATACGCATCATGGACTTTgagaaaagaataaataaaactagcTGATTTCTCAGAAACTAAACTTGTGTTTTAATCCATTCTCACATTTCTCAGGTATTTTCCTAtgttaaatcaattaatcactGAAGCAGATCTCTGCGGTGATGGAAGCTTGTGCGAACAGAGCGCACTCCACGGGAATCACACCTCCACCGTGGTGCAGTGGTCGCATTGAGCAGCTCTTGT
>TU17594
CTCCTCCGCCACCTCCTCTAGCCTCGGCTCCCCTTCTCCTCAACTGACATCTGAGCCCCTCCCTCTGGAGCCTGGGCCCTCTGCCTCTCCCACTGCCTCTCTAGCTGCAGGAGAGACAGGCCCCTCCGTGTATCAAAGGCTATATTTAGGAAGAACAAATGCAAGTAATGAGAGGAATCCCTTTGCAAGTGCCTACCAAACTGCCTTCAGCCCAGAGAGAGCATCAGccctgagcagcagcactgttcACTCCCAGATCCAGGAGAGGCTTGTGACCCGTTCTCCTAGTCCAGCCCTGTGCGTCCAGGACTCCGGACTTCCCTGTGCAAAAATGTCCAAGCAGCCGTCATCCAACGTCAAGGCCTTGCAGGCCAACCTCAATATCCCGATGGGGGGTCTGCGTCCGGGAGTGGGACATCCTgtgaagaggagagaggagtcAGTGGAAGCGGAGGAGCACATTCCCGCCGATGTGGTCGCAGAGAAGAAGCAGCCGCAGCTCCCCGGGGCGGTCAAGCTGCCTGGACCAGCGGTCAACCTGTCCGAGATCCAGAACGTGAAGAGCGAGCTGCGATGGGTGACTAAAGACTAAGGCAACAGGACTGGGGCCGGGCTGGGAGAGCTGTTCAGAGACTCAAGACAGACTGCAAGAACTCCACTGCATTCTAACAGCTTCGTAAAACTGTCTATAAAGATGAATGACTACCTTCTATAGACCCTGAGCAGGGGCTGGCATCCCATTCAAAAGCAATTtagtaagaaaataataataataataataataataataataataataataataataataataataataataatcattgttaAATATACCAGTGAGTGGCCCATGTTTGAGAGCCTGCCCCAGACGAGCCTTtgagaaatattttttgttatcaaCTTAATCCTGCTGAAAATTGAATGTCTATTTTTAACTATTAggctataaatataattataaaaataaatatatacaaatctatATCTAACTATATATAGGGAAGTTATTCTGGTGATGTCTGAGGCACTGTAGCCCTTCACAGACACATGGAAATATGCATGTAGAAGCTTTTTGCAACACCAAACACCTCAGAGGTGCCCCAGGGATACAGTGTGGACTAAAGCTCCACAATTCCCtttcatacaaatataattttgcatGCTTAGTTAAGCTTAAATTCCTGGGAAAATACAGCCCCTATCATTTGCACACAGCAGTGAAGGTCCAGGCGTGTCCTAATTCGCCACAGACAGACTCAGAGGGATCAGGATGGTGGGCATTAACACATCcactgcctgcctgtctgcctgccttCAATATTTCCTTGGGATTGTCTGCTTACACATCAACTGCATTGTTTATAACCTGCTGACAGGAAACAAGGGGAAGATTTCAACTGCATGTTTTTTAGACTGGAGCAAAATGTAGACGGTGATAAGCAAGcaagcacactgacacactgacacactgactgactgacacactgacacactgactgactgattgactgaccgACTGTTCTACAGAAACCACATGCAATGCTTAAACAATTCACTTcttgacttttttatttactCTGAGAGATTTTCCACTTTAGGTTTGACAAACACAATCAGTGACACCCCACCTCTGGGCTTTAAGGTGTCATGCCCCCCAGTGGCTGCTGCAGCTCAGTGCTCTGTAACACAGGCTGGGCTATTGACCACGAATCGGCAACATGTGGCCCAGACAGCCATCTCCAGTGTCAGTGCCTTGTAGCTTAAAAACATCCCAGGTATTTCCAGCCCTCAGCTAAAAGCTTTCTGTGAACAGCAGGGCACTCAGAAGAAGGAATTCTCAGTTCATTGTGTTccttttattatcattactacATTTCTGTGTTTAAGCATGCTAATGTAAAGCTTATCTTTATAAGTTATAGCTGAAGAGTCGCATCCAGCTAtccctgtgttgtgttttcggCGTTACAATTTCACTGCTTGATTGTGCTGAATATTTTATCTTCactgttgtattattgttattattgcagATATTATTgttctgatgatgatgattactaTGTCACTGTTGTAAGTCCTGTTGCGAGAAGCACAGAGATATTTGTCTTTAGTTTCAGCATTTCATAGGTCATTAATTCGGGCTGGAGGTTTTAAACAAGACTCAAGTCGCTAAGCAGGATTTTCAGTTCTAATACCTGGGTGGCTGCGTACAAATACACAGCATTGAGAATGAATACTGTttcatattgtgttttattatatcaGAAATCGATCTGTGTGTAGTTTTTTGTGTACTAGAGAATGTGAAAGCAGGGATATGTTCAACTGCGCTTCTCTCTGTGCTCGTCCAGGTCCACAATCATCTCTTGCTGTACTTGCTGTAAACCAGTCATTCGTTTCTGCCCCTCAGGAGATAAAACCCTAAAAGTACGGCATCTTTAAGGTTACATGTCATTCATGCTTCAGAGCAGCAATTTGTCTCTCTACAAAGCCGGTTACCTAAGATTTAGGTAAACACATAGAGATAATATCTGGTGAATGGGGGATTGTAGGAGGTCTGATTGACTCTGTAGTGCCGATGACTTTCATTAGACTCCTTTATTAAAATTGGAAATACAAAACCGGAATTGGAATAAATCTGTTCTCATCCTGAAAGCCAGCCCACTCCCTCGGACTCCCTCTGTAAGGAGAAGTGTTATCCCCACACTGCAGAGGAGAGCGTATTGGGAAACAACCCCTCAACACAACCTGCAGCCTCCACAACCTGAGCAGAAGCTGTGAAGAGCAACGCAAGACAAAACTGAAgaatcaacacattttcagagcttttttaaattgtatttattttatttcacttctaAACCTCAGGTGTAAGGGTGGTAGTAAGGTTTGTTTACATATGTGGTGCAAGGCTGAACTATAGGCTGTGTGTCGACTTGgttatggtttaattttgttgtataaatattttcagttaGAGGTTTCTTTCAGAGGGTCCATTTGAAAGTGTCCTTAATTGTGAATTCTGGCAATATACTGTATTACATCTGAACAAGGGACTGCTGCACTGACCTTGTTATACGCATCATGGACTTTgagaaaagaataaataaaactagcTGATTTCTCAGAAACTAAACTTGTGTTTTAATCCATTCTCACATTTCTCAGGTATTTTCCTAtgttaaatcaattaatcactGAAGCAGATCTCTGCGGTGATGGAAGCTTGTGCGAACAGAGCGCACTCCACGGGAATCACACCTCCACCGTGGTGCAGTGGTCGCATTGAGCAGCTCTTGT

Function

symbol description
smpx Predicted to be active in M band; costamere; and muscle tendon junction. Is expressed in several structures, including Kupffer's vesicle; electrically responsive cell; extraocular musculature; inner ear; and pericardial region. Human ortholog(s) of this gene implicated in X-linked deafness 4. Orthologous to human SMPX (small muscle protein X-linked).

NR:

description
PREDICTED: small muscular protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016538 False 2650 mRNA 0.43 4 24554207 24566956
TU17593 True 3364 lncRNA 0.44 5 24553692 24566678
TU17594 False 3312 lncRNA 0.37 5 24553692 24566678

Neighbor

gene id symbol gene type direction distance location
AMCG00016539 NA coding downstream 3567 24548377 ~ 24550125 (-)
AMCG00016534 NA coding downstream 160837 24375867 ~ 24392855 (-)
AMCG00016535 eif1ax,EIF1AX,eif1axb,LOC105905255 coding downstream 177885 24372069 ~ 24375807 (-)
AMCG00016532 NA coding downstream 190654 24355911 ~ 24363038 (-)
AMCG00016530 NA coding downstream 199493 24338444 ~ 24354199 (-)
AMCG00016546 LOC108276628,LOC107663623 coding upstream 154233 24721189 ~ 24739122 (-)
AMCG00016545 NA coding upstream 195613 24762569 ~ 24786410 (-)
AMCG00016550 NA coding upstream 223192 24790148 ~ 24800194 (-)
AMCG00016551 NA coding upstream 235780 24802736 ~ 24809912 (-)
AMCG00016552 NA coding upstream 308908 24875864 ~ 24878227 (-)
G14181 NA non-coding downstream 128194 24425164 ~ 24425498 (-)
G14171 NA non-coding downstream 216865 24335944 ~ 24336827 (-)
G14093 NA non-coding downstream 388272 24165157 ~ 24165420 (-)
G14092 NA non-coding downstream 406015 24147399 ~ 24147677 (-)
G14016 NA non-coding downstream 610314 23942044 ~ 23943378 (-)
G14213 NA non-coding upstream 34742 24601698 ~ 24602007 (-)
G14214 NA non-coding upstream 39152 24606108 ~ 24606321 (-)
G14218 NA non-coding upstream 48831 24615787 ~ 24618345 (-)
G14222 NA non-coding upstream 116109 24683065 ~ 24684535 (-)
G14245 NA non-coding upstream 149770 24716726 ~ 24780266 (-)
AMCG00016531 NA other downstream 230234 24309256 ~ 24323458 (-)
AMCG00016505 NA other downstream 668434 23864581 ~ 23885258 (-)
AMCG00016504 NA other downstream 690953 23841062 ~ 23862739 (-)
G13969 NA other downstream 853437 23699149 ~ 23700255 (-)
G13962 NA other downstream 1097881 23455092 ~ 23455811 (-)
G14305 NA other upstream 314192 24881148 ~ 24882098 (-)
AMCG00016562 rnf6 other upstream 441018 25007974 ~ 25015343 (-)
G14392 NA other upstream 513612 25080568 ~ 25083699 (-)
AMCG00016579 NA other upstream 697816 25264772 ~ 25277478 (-)
AMCG00016591 NA other upstream 846360 25413316 ~ 25420371 (-)

Expression


Co-expression Network