AMCG00016539


Basic Information

Item Value
gene id AMCG00016539
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24548377 ~ 24550125 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016539
ATGAGCTATTTTCTGGTGCTGAGCAAGACCCATGGAGAAACGATCCTGTCACAGTACCAGCGACTGAGGGAAGATCATGCGCTCTGTGATATAGTGCTGGTGGCTGGCGGCACAGAGTTCCCAGCACACAGGACTCTCCTGGCGTGCTCCAGTGACTATTTCAGGTCACTCTTCAAGGACTACACCAGAGAATCCAAAGCCAAACTGATAAACCTGCAGGTGATCTCTTCTGTGGGACTCCAGCACATCCTGGATTTCATCTACACCTCCTGGCTCTCCGTCTCCCCGGGCACCTTGGAGGACACTTTAGAAGCAGCCAGCTACCTTCAAGTCATCGAAGCCATCGAGCTGTGTGGCCAGTATATCACCGACAACCTCAGCCCGGAGAACTGCTGCTTCTTCGCCAATGTCGCCTCCAGGTATGGCATCCGCGGGGCTTTGTCTGCTGCGAACAGATACATCGGCAGCAAGCTGGGTGAGCTGCTTCGCTGCGCTGTGGATTCCACCGGGCTTCTGGAGCTCAACTCAGAATCTTTCCTAGAAGTTCTGGATTCCGAGGAAATGCCCAGAGTCAGGGAGCTCCCACTCCTGACCCTAGTGCTGCAGTGGTTGAGGAGCAACAAGCTCTCCACTGTGAGGAGCAACCTCGTGCTGAGCAAGATCAGGTACGGGCTCATCCCCGCAGAGGAGCTCACCAACCTCTACTCTACCAACAGTGCCCTGCAAACTCCCTTCATAAAGGGCCTGATTCTAAAGGCACTGAATTACCATTCCTTGGGTCACCAGCAGCCACTGGTTCAGAGCACACAGACAACCCTCAGGAGCCGTGGTACCCAGATCCTTCTCACAGGGGGCGGCACTCAGGCTGAGGGGCTTGTGAGCGAAGTCCTGGCCTTCGACCCCTATTTCAAGAAATTCAGGCCCCTCACTGAGCTCCGGAGCAAAGTTCAGAgccactgtgtttgtgtggtagGGAATTTCCTGTATGTGCTGGGCGGGGAGGTCTTGCAGGTCAACGAGAATGAAAAGGCAGTGACCACGCTGGTCACTAATCAGGTCCACCGCTACGATCCCCGGTTCAACATATGGGTCGAGACAGCCGGGATGATTGATAGGAGGGCTCAGTTTTCGTGCTGCGTAGTAGATGGCAAGATATGCGCCATTGGTGGCAGGGGTGGGATTGAGTCGCCACTCTCTTCTGTGGAGGTATACAATATCAAGACTGACAAATGGCAGAAAGCCAGAGACCTTCCGCAGAAGATGCACGGCCAGGCCAGCTGTGTCTACAAGGACACCATTTTTACCTCAGGAGGGATGTTCGcccagcagagagagagcagcagggaTGTGTACAGCTTCAGCATGCTGGAGGATCAGTGGAAGAAGCGTGCTGCCATGTCCATCGCTCGCTTCGGCCACCAAATGGCCACCATCAAGGAGAAGATCTACACGTTCCTGGGGATGTACGAACCCTTCTGTGACATCGAGAAGTACGACCCGGTAGAGAATCAGTGGACGAGGTTGAAGCCTCTGCTGAATGACAGATTCTCCTATGGCATGGCCTTGGTGGAAGACAGCGTTCTCCTGATTGGTGGGAAGAAGTGGCACAATTCTCAGGAGGTGCCTACCCCAAGCATCCTTGAATACGATGTGGACGGAGACAGCTGGAAGGAGTTGTGCAGGCTTCCCCGTCCACTGTATGGGATGCAGTGTGCCCTCATGCAGCTCCCAGAGCCCTTAGAGACCTAA

Function

GO: NA

KEGG:

id description
K10469 KLHL34; kelch-like protein 34

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016539 True 1749 mRNA 0.55 1 24548377 24550125

Neighbor

gene id symbol gene type direction distance location
AMCG00016534 NA coding downstream 155522 24375867 ~ 24392855 (-)
AMCG00016535 eif1ax,EIF1AX,eif1axb,LOC105905255 coding downstream 172570 24372069 ~ 24375807 (-)
AMCG00016532 NA coding downstream 185339 24355911 ~ 24363038 (-)
AMCG00016530 NA coding downstream 194178 24338444 ~ 24354199 (-)
AMCG00016533 NA coding downstream 244063 24290694 ~ 24304314 (-)
AMCG00016546 LOC108276628,LOC107663623 coding upstream 171064 24721189 ~ 24739122 (-)
AMCG00016545 NA coding upstream 212444 24762569 ~ 24786410 (-)
AMCG00016550 NA coding upstream 240023 24790148 ~ 24800194 (-)
AMCG00016551 NA coding upstream 252611 24802736 ~ 24809912 (-)
AMCG00016552 NA coding upstream 325739 24875864 ~ 24878227 (-)
G14181 NA non-coding downstream 122879 24425164 ~ 24425498 (-)
G14171 NA non-coding downstream 211550 24335944 ~ 24336827 (-)
G14093 NA non-coding downstream 382957 24165157 ~ 24165420 (-)
G14092 NA non-coding downstream 400700 24147399 ~ 24147677 (-)
G14016 NA non-coding downstream 604999 23942044 ~ 23943378 (-)
G14213 NA non-coding upstream 51573 24601698 ~ 24602007 (-)
G14214 NA non-coding upstream 55983 24606108 ~ 24606321 (-)
G14218 NA non-coding upstream 65662 24615787 ~ 24618345 (-)
G14222 NA non-coding upstream 132940 24683065 ~ 24684535 (-)
G14245 NA non-coding upstream 166601 24716726 ~ 24780266 (-)
AMCG00016531 NA other downstream 224919 24309256 ~ 24323458 (-)
AMCG00016505 NA other downstream 663119 23864581 ~ 23885258 (-)
AMCG00016504 NA other downstream 685638 23841062 ~ 23862739 (-)
G13969 NA other downstream 848122 23699149 ~ 23700255 (-)
G13962 NA other downstream 1092566 23455092 ~ 23455811 (-)
AMCG00016538 smpx,LOC107721880,LOC107590224,LOC107663668,LOC107705278 other upstream 3567 24553692 ~ 24566956 (-)
G14305 NA other upstream 331023 24881148 ~ 24882098 (-)
AMCG00016562 rnf6 other upstream 457849 25007974 ~ 25015343 (-)
G14392 NA other upstream 530443 25080568 ~ 25083699 (-)
AMCG00016579 NA other upstream 714647 25264772 ~ 25277478 (-)

Expression


Co-expression Network