AMCG00016540


Basic Information

Item Value
gene id AMCG00016540
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24669212 ~ 24683200 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016540
ATGGTCTTGCCCTGGCCCAGGGAGAGGCTCGGATCCTGCGGACTGTTCCTCGCCCTCCCGGTCTGTCTCTTCTCTAGCATGTTGCGGCAGGTTTTGCACGGAGGACTGAGGACGTCTTTCTCCAAACTCGGCCACTTTGTCGCCAACCACCCGGTGTTCTTCGCCTCCGCCCCCGTCCTCGTCTCCATCCTGCTGGGAGCCAGCTTCAGCCGGTACCGGGTCGAGGAGAACGTGGAGTACCTGTTGGCCCCCAAACACAGCCTGGCAAAAATCGAGGGCAACCTGGTGGACAGCCTGTTTCCCGTAAACAGATCCAAACACACGCTGTACTCGGATCTGCAGACCCCCGGGAGGTACGGCCGGGTGATTATCACCTCCTCCGGGAGAGGGAACATGCTGGATCAGCACCACATTGACCTCATCCTCAAGCTACACAGCCTGGTGACCAAGATTCAGGTGCACATGCTTGGCATCAACTACACCTTCGCCCACATGTGCATCCTAGATGACAACAAGAGCTGCATCGTGGACGACATCCTGCAGGTGCTGGAGGAACTGAAGGGGGCGCGGCTAGCCAACCGCACAGGCTTCGCCATCCGATACCCGATCACCTACTTGAGGGACGGCCGCGAAGTCTACATCGGCCACCAGCTGGGGGGGGTGCAGCCGCCGGGGAAGGAGCGAGTGAAGTTTGCGGAGGCAGTGCAGCTCACTTACTACCTGCAGGCCGTCAACTCCCTGAACGACGTGGTGGCGGCCAAGTGGGAGGCCAAATTCTGCGAGACAGTGGAGGGCTTCCAGGAGGAGAACAGCGAGCTCAGGGTGTTCCCCTTCACCTCATCCTCGCTGCAGAGGGACTTTCAGAAGACCAGCAAGGTGTCCGAGCGGCCACTCCTCACCAGCCTCTCGCTGTGCGTCTCGCTGGCGGTGCTCTTCTGCTCCATGCGGGACTGCGTGCGCACCAAACCCTGGCTGGGCCTGCTGGCCGTGGTCACCATGAGTCTAGCCACCCTCACCTCCGCCGGCATCGTCAACCTGACCGGCGGGAAGTACAATTCCACCTTCCTGGGCATCCCCTTCATTGTTCTAGGCCATGGGCTGTACGGGACGTTTGAGATGCTGTCATCGTGGCGGCGGACGCGGGAGGACCAGCATGTGAAGGAGCGTGTAGCGGCAGTATTCGGCGACTGCGTGTTGCCCCTCACGGCAAGCACCGCCATGTACATGGTTACCTTCGGGATTGGGGCCAGCCCCTTCACCAACATCGAGGCTGTGCGCATCTTCTGCCGGAACACCTGCATCTCCGTCTTCTTCAACTACCTCTATATTCTCACCTTCTACGGCTCCAACCTGGTATTCACAGGCTACCTAGAGAACAACTACCAGCACAACATCTTCTGCAAGAAGGTGCCCAGGCCGGAGCTGCTGCAACAGAAGCCCATGTGGTACCGGTTTCTCATGTACACACAGTACAACGAGGAAGGGGCCGAGGCAACTGACATGAACGCCTATGAGAGCCACCTGCTGGTGTCCTTCATGAAGCGCTACTACTGCGACTGGATAACCAACACCTACGTCAAGCCCTTTGTCGTCCTCTTCTACCTTGTCTACATCTCCTTCGCCTTAATGGGCTACCTGCAGGTCAGCGAGGGCTCCGACCTCAGCAACGTGGTCGCCACGGAGACCAGCACCATCGCTTACACCACCGCCCAGCAGAAGTACTTCAGCAACTACAGCCCAGTCATCGGCTTCTACATCTACGAGTCCATCGAGTACTGGAATGCTAGCGTGCAGGAGGACGTGCTGGAGTACACCAAGGGTTTTGTCAGGATCTCCTGGTTTGAGAGCTACCTGAGTTTCCTGCGCAAGCTCAACATGACCACCGGTCTGCCCAAGAGGAACTTCACTGAGCTGCTGAGGAACGCCTTCCTCAAGCTGCCGCAGTTCTACCACTTCTCGGACGACATCATCTTCGGCAAGAGGTCGGGCGGCGAGGTGGACGTGGTGGCCTCCCGCATGTTCCTGGTTGCCAAGACGACTGAGAACAAGCGCGAGGAGATGTACATCCTGTTGGACACGCTGCGCAAGCTCTCACTGACCTCCAAGGTCAAGTTCATCATCTTTAATCCCTCTTTTGTCTACATGGACCGTTACGCCTCCTCAGTGGGCGCCCCACTGAAGAACTCCTGCATCAGtgccctcttcctcctcttcttctccgCCTTCCTGGTGGCCGACTCACTCATCAATGTGTGGGTCACCCTGGTGGTGGCGTCCGTGGAGTTTGGGGTCATAGGGTTCATGACCCTGTGGAAGGTGGAGCTGGACTGCATCTCGGTGCTCTGCCTGATCTACGGGGTGAACTACACCATTGACAGCTGTGCCCCACTCATCTCCACCTTTGTGCTGGGCAGGGACTTCACCAGGACTAAGTGGGTGAAGATCACCCTGGAGCGCCACGGTGTCTCCATGCTCCAGAGCTACCTGTGCTACACAGTCAGCCTCCTCCCGCTGGCAGGCGTGCCTTCCAACCTCACCCGCACACTGTTCAGGTGCCTGTTTCTGACTGCCTTCATCACCTTCTTTCATTGCCTGGCCATCCTGCCCATCATGCTCACCTTCCTGCCCCCCTCcaagaagaagaggaaagagAAGAAATCTGCAGAGAGCCGCGAGGAGATTGAGTGTGTGGAGATGGTGGACAGCACGCGCGTGGTTGACCAAATCACCACTGTCTAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0008158 hedgehog receptor activity molecular_function

KEGG:

id description
K24682 PTCHD; patched domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016540 True 2739 mRNA 0.58 3 24669212 24683200

Neighbor

gene id symbol gene type direction distance location
AMCG00016542 LOC107663624 coding upstream 51681 24601700 ~ 24617531 (+)
AMCG00016541 sms,LOC106603082,LOC107700049 coding upstream 71365 24581977 ~ 24597847 (+)
AMCG00016536 NA coding upstream 89028 24569128 ~ 24580184 (+)
AMCG00016529 NA coding upstream 332385 24324950 ~ 24336827 (+)
AMCG00016519 NA coding upstream 550839 24104905 ~ 24118373 (+)
AMCG00016547 NA coding downstream 17545 24700745 ~ 24712231 (+)
AMCG00016543 NA coding downstream 29132 24712332 ~ 24719584 (+)
AMCG00016544 NA coding downstream 60146 24743346 ~ 24761109 (+)
AMCG00016548 plcxd2,LOC103047596,LOC105905211,LOC107663676,LOC108414136,LOC107671354,LOC108256473,LOC107586725 coding downstream 128650 24811850 ~ 24823512 (+)
AMCG00016549 NA coding downstream 142409 24825609 ~ 24866424 (+)
G14177 NA non-coding upstream 249605 24419358 ~ 24419607 (+)
G14127 eif1ax,EIF1AX,eif1axb,LOC105905255,LOC106563585,LOC106590461,LOC108411992 non-coding upstream 293385 24370326 ~ 24375827 (+)
G14136 NA non-coding upstream 330364 24336970 ~ 24338848 (+)
G14132 NA non-coding upstream 347893 24317800 ~ 24321319 (+)
G13979 lipt2 non-coding upstream 803412 23862215 ~ 23865800 (+)
G14354 NA non-coding downstream 438883 25122083 ~ 25122392 (+)
G14363 NA non-coding downstream 461382 25144582 ~ 25144782 (+)
G14383 NA non-coding downstream 586638 25269838 ~ 25270195 (+)
G14444 NA non-coding downstream 674687 25357887 ~ 25359035 (+)
G14445 NA non-coding downstream 677271 25360471 ~ 25360808 (+)
AMCG00016537 NA other upstream 107405 24479706 ~ 24561807 (+)
G14057 NA other upstream 559030 24080017 ~ 24110182 (+)
AMCG00016506 NA other upstream 724188 23938051 ~ 23945024 (+)
AMCG00016502 NA other upstream 786266 23866267 ~ 23882946 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other upstream 2837064 21782106 ~ 21832148 (+)
G14326 NA other downstream 324762 25007962 ~ 25010687 (+)
AMCG00016558 rpl21,LOC107591224 other downstream 397474 25080674 ~ 25085097 (+)
G14361 NA other downstream 449998 25133198 ~ 25133879 (+)
AMCG00016566 NA other downstream 467148 25150348 ~ 25157461 (+)
AMCG00016584 NA other downstream 687096 25370296 ~ 25404840 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023482 ptchd1 coding NC_007135.7 CM002908.2 25347503 ~ 25364775 (-)
grasscarp (Ctenopharyngodon idella) CI01000018_06696391_06705674 PTCHD1 coding CI01000018 null 6695758 ~ 6705674 (-)