AMCG00016541 (sms,LOC106603082,LOC107700049)


Basic Information

Item Value
gene id AMCG00016541
gene name sms,LOC106603082,LOC107700049
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24581977 ~ 24597847 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016541
CACACATGCTCGCAGGCCCCTCCCCCGCCCGCCGCACGGAGAGAGAGCACCTCCAGCGTGTCCTCACTGTCAAACACAGGCTCCCTCGCCCTCACTACGGCTGCCTCCACCAGGCATGGCTGCGGGCTGCTTCCCATCATGGCCGTGCGACATTACACCCTCGACTTCCAGCTCTCGGAGCCAGCTGACTGCACCACCTCTGCCCAGGGCCTGCAGGCAATTTTTCAAGAGCAAGAAATGACAGAAACCTTTCACGGCACTGACGACCATGGCTACTACGCAACGTTCACTGGCAGAAATGGCAGGTTTGTTGTTCTCCGGCTGCACTCGCACGGGTTTGTGTCTGTGGACCTGCAGAGCTGCGCTGGAGACGATGCCACACAGGTGGATGACCTACTAAATGCActggaagaaaaaatgaaagttCTTTTGCACGGCAAAATTAAAAGGAGTAAAAGGCTGCCAGCCCTTCTGCGGGGGGAGGAGGTGGATCGATACTGGCCCACGGCGGACGGCCGACTGGTAGAGTATGACATCGACAAGGCTGTGTACGAGCAGGACTCGCCCTACCAGAACATCAAGATCCTGCACTCCAGGCAGTTTGGCAACATTCTCATCCTCAATGGAGATGTCAGTAagtgaacaataaaaaaaaaaaaaaaaattgcaccaGCTGCTACCAGAGTGACCGGTCTAAGAGCAGCTTCCCTTCCGCCTCCTGTAGTGACCAGGCAGCGTCTTGCAAGCCAAGTGACCCTTATCATTTGTAGGAGCTGAATTATCAGCTGGATTTCACTCCCAGCAGCCAGTGTTCTCGGTCTGCAGTGCCACTCTTGCGCACTCCCTCCATCTCTGCTGATCCCTGAGCAACGGTCGGCTCCCCGGCCTGCTTGGAAATTTCCGGCCCCCCTCTGCAGAGAGCCCCTCCCTCGAGCAGCGGGGTGTGGAGGGTTTAGCTCGAGAACGAGCGCCGGGCGGGAGAGGGCTGCTGTTCTACTCGGCGTCCCACAGTCGAAGCTTTTCAACTGCACTCTCCTGCCGGTCCTGGGGTATAACGGAAAACCTTGCCTTGATTACTGGAGGAGAAATggaatcaaatacaaaattggaAGCAGCTGcgattgttttgcttttttatcaGAGGCAAACAAATTAAGCAGTTAGATTGcaggtgtttttaaaataatataatcagatgacaatggaaataaaaaacaagcttctctcCGGCCGCTCAGTGTCAGTGCGTTTAAATGAGCAGCGCACTGGAGGGGGTTTGTTCAGGCTGCGCTGCGACAGGAAATAGCAGGGTGTAGGGCGTAGGGCTACTGTGATCATATATCATGTGCTTGAATAACTGCAAACCACAGCCAAGTATAGCCCTTTATATATCTTCTTAATCACTTGCCTTAATTATGAAATAAGGGACTGTGGGCTGAGACCAGACTTGGGCTCACATACATTTCCCGATGCTCTCTAAGTACTTTGAATTTGTAATCGGCTTTGTTTATCAAGGTGAGGGCTTTCTAGGCAGCTTGGCATGATTACCGGCCGCACTGTGCGACCACTTCAGCGCTGTCGCCGCTGCAGACGGGCTCAGACTGATTGAGTTGAATGAGTTGACTGGATTAGGCCTGCCTTCGAAAAAGCAAGGCTGGAAACAGCCTCCAAAGGACCGGTTCCAGAGGGGTTGAAAGGCCGAACGTTTTGCAATTCTACAATATCTTGTTTACCCTGAACCTGAGTGGATCTGTTGCTGCTGCCATGCACTGCAGCCCCCCCTGGTGGAAGGAACAAGACATGACACAAAGGAATTGGTTGTATCAAGACTTTATAAGGCCCGGTTTTATATCACTGTGTACGTCGATGCCACTGTCTAGCATATTGTGACAGatctgtttaatttattcttattctACACACAAAACATAGAGGACATAGAATTCTTATTCACTGTAGAAATCGTTTTTGTCCTCGCTCTGTCCCACCACCAtctccttttccctctctctgtcctacCCCTCTCAGACCTGGCAGAGAGTGACCTCCCATACACCAGGGCCATCATGGGCAGTGGGAAGGAGGACTATGCCGGGAAGGAGATCCTGATCCTGGGTGGCGGTGATGGTGGGATCCTGTGTGAGGCAGTCAAGCTGAAACCAAAGATGATCACCATGGTGGAGATTGACCAGCTGGTAATCGATGGGTGTAAGAAGCACATGCGCAAGACCTGCGGGGACGTGCTGGACAATCTGAAAGGAGACTGCTACGAGGTGTTGGTCGAGGACTGCGTCCCCGTGCTGaagaagtttgccaatgaaggGAAGACGTTCGATTATGTGATCAATGACCTCACAGCGGTGCCCATCTCCACGGCCCCAGAGGAAGATTCGACGTGGGAGTTTCTGCGGCTGATCCTTGACCTCTCCATCAGGGTCCTGAAGCCCAGTGGGAAATACTTCACACAGGGAAACTGTGTCAACTTGACTGAGGCGCTCTGTCTGTACGAGGAGCAGCTGGGCCGGCTGTGCTGCCCGGTGGAGTTTTCCAAGGAAGTGGTTTGCGTTCCGTCGTACATGGAATTGTGGGTTTTCTACACGATATGGAAGAAGTAAATCCAGTTTGTTGCTGGAGCTCCACGCTGCATGAAGCCCCTGGGAGCAGTACGCTGTCTACCAGAGCTCCGCGTTTCAGATGCACtgtaaagagaaacagaaagtaGTCTGGCtggtttttcagttttgtacatCTGCGTtataattttcttttgtatgttggattttattttatttttttcagttggtgtttgttattttgttgtgtgtagGTTGGGTAATAACGCTGTAAGTTGCTGAGCTTGTGGTTGGCTTGGCGACTCGAAGATGAAAGCTGCTGCACAGAGGGGCGGGACGTGATCTGTCTTTTCAACAGGACATTCGAAAGGTTCCTCTGTTGTTCTTGCTGTATTTGCTCAATGTACGATCTTGTGTATAGGTTAAGAAGTCACTCTGCTTTCAGacctttctttattattattttataaatgaatgttGGTTTTGATTTATGGTGCTTTCAGTGTGCAGCCAAGGAACTGGTATTAACTTGGGCTTCCAGTTTGACATTGATGCgttttaaacttgttttaaaagggaaatgttttttgtttgtttttcttccccccattCCCCTTGCTCGCTCTCCCCGCTCTGGATAGCACCTGGCCATCGATCTCTTTAGGAAGCCTCTGACCCCTGTCGACCCTGCTGGGGTCCTTGACTACACTCTGGTTAGGCCTGATATAGCAGCCTATCCTCCTGACagtaactttcttttttttttttttttcttctttttaaataaaagttccCCTCATTTCTTAGTCACACAGATCCCCTGTGGATGTTTTCCTCAGCAACACAGTGCTTTTGTCACATTCCAAGATAACTAACATGtcctttttaaacaataaaatacaatttttaaatatgcGAGAGTCGAAACCTCCAGGCGAATCACGGCAGCCGGGAGCATGGCGCCCAAGGGGGGCCCTTTAAAGGAACTGGGGGACCTCAGTTAGCAGACTGGAGGTTTAGCAGAGAGCCGATGAGCATCTCACCTGGACAGAGCAGCAGCACAGGggccagctgtgtgtgtgtgtccattgcTCTGTAAACTGTGTCTGTTGCTGTGTAAACCCTGCTGGAATATAGGTACTACATGTAACACAAGACAGCCAAGATTGTTGTtttagaagtgtgtgtgtgtgtgtgtgtgtgtatatgtctatCTCCTTCCCGCTCGAGGATGCTGCCCCTGGGCGCCTGCGTCTTGTCTTTCTCAGATGACATGTTTATCGTGCTCTTCCCCCCCGGCCTGTGTtctctgttcatttgttttataattaaattcaaagCGGTTTGAGACACTGGGATCTGTTGGTAAGAACAGGCCTGCTTACACCAGCAACCTCCAGGTGTGCTTAAACAAGACCGGGATCTGGTTTGAACATTGGATAattaagtctttattttcatttgatgtgATTTGTGTAGGGACTCTCACATAATCCTTTGCAAATTATGCGATTCATGGAGCCTTGTTTTTAAGTATGTAAACGTCTTGGTCTTCAATTAAAGCTTAGAAAAGCCGAtctaatggaaaaacaaaataaatgcaagtcttcaaaaaagtgaaattataaTGGTGGGGGGGCATAACGAGGGCTAAGTGTTTAATACTGTTAATTTTGTGTTTGGCACTGTGGCACTCCAGGCCCAGGTCTTGGCATTGAATCAGGAGCAGGAGGAGTGAACATCCCTGGCTGATTGACACGGCTGAAGTAGGGCTGTTCTGTATTTATGTCTTGTGCTTAAAATAGGCATAATGTTTAAACCTCTATTTTTGGCTTTTAAGAGGGGCGGCACTTTTTAGCCACCAAAAAGGGAGTATTGTGTGCGTTTATACATTGATGTCAAACATAATTTCATGGGCCTGGACCACTCGGTTCCCATTGATTTAAAACTGAGTggatcatttgttttctttgctcaGTTAATGAACATGATCGATGGCCTCCATGTTTTAATTCAACCCAATATatcctcccctcctccactgtgTCGCTGCCCACCAAGCACCAGCTGAGATTTATACCCGATGTGACTGATCGAGATCACTGCATCCTGCATCTTCTGAGATTGACTTAACTGATAATgagctttacatttaatttagatcTCAGACATGAGACTCAAAATGCcccaagtaataataataaaaacatcttggCTGTACCAAAATCAGCAAAAAACAAGCCGTTCAAGTGGACATTCCTGGATATTAAGGAGAATAGTTCGAGCAGTGCCCTGGGCATCTGCGAAACCTGCTGACGATCAGAGCTCGTGTAAAGTGTGATGTGTTGCATTACAGTCCGGAGATGTGGGtgatgcttttttcccctctgtctctGCTTCCCCGATCGTTCTCCAGTCTGGGTAGTCTGACTGTAGTGACCTTATGAACAGAAGAGGCCAGACCCCATTTATAATATCCGTGGACTCCAAAATTGGGTTTGGGTGCTGTTAGTTCACAGGAACgcttttattatcattatgattgtttttattttgttattggtgttctgtgtgtgttgtgtacagaAAATTGGTCATtgggcaataaaataaaataaaatctgaattgtGTTCCACCGCTATTTTATGATCATCTGTGGGAGTGGGAGCAACTTATGGTGGTGCAAGTTGAAAAGATTGTAGCTGTTTTAGGATTTACTGTCTTGCCCCCACCCCCATGCTGGAAATATCATGTCTAAGCAGATGTGCTGCTGTGGCTTTTTCAATATGTAGGACAGAAACCTGGCATCTggcttttttcctttcattattgCTGCCACTATACCTTCACTCTTGGCTCCATTGTATCATAAATGTGGTTTGatattacagtaattaaatagaaaaaaggtCTGGGTGTTTCCAGCTCATTCTGCAGatctgttagtgtgtgtgtgtgtgtgtgtgtctgtacaccTGCAAAAAACACCACTTGTTCAGTCTGTACCTTTTGTTTGCACTAACTTCTGCTTCCGCCAAAGTGAAGATGTTTCAGAGTATTTTATCTTGGCACTGAAGAGTTGGGTGGACTGCTGTTGCAGTACACTATTATAGAAACATTGATGGAAAGTTGGTggaatgtttattaaaaaataaaaataaa

Function

symbol description
sms Predicted to enable spermine synthase activity. Acts upstream of or within spermine biosynthetic process. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability Snyder type. Orthologous to human SMS (spermine synthase).

NR:

description
PREDICTED: spermine synthase isoform X2

GO:

id name namespace
GO:0006597 spermine biosynthetic process biological_process
GO:0016768 spermine synthase activity molecular_function

KEGG:

id description
K00802 SMS; spermine synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016541 True 5736 mRNA 0.47 10 24581977 24597847

Neighbor

gene id symbol gene type direction distance location
AMCG00016536 NA coding upstream 1793 24569128 ~ 24580184 (+)
AMCG00016529 NA coding upstream 245150 24324950 ~ 24336827 (+)
AMCG00016519 NA coding upstream 463604 24104905 ~ 24118373 (+)
AMCG00016520 naa50,LOC107732992,LOC106590472,LOC106579447 coding upstream 480412 24089830 ~ 24101565 (+)
AMCG00016515 NA coding upstream 504691 24073722 ~ 24077286 (+)
AMCG00016542 LOC107663624 coding downstream 3853 24601700 ~ 24617531 (+)
AMCG00016540 NA coding downstream 71365 24669212 ~ 24683200 (+)
AMCG00016547 NA coding downstream 102898 24700745 ~ 24712231 (+)
AMCG00016543 NA coding downstream 114485 24712332 ~ 24719584 (+)
AMCG00016544 NA coding downstream 145499 24743346 ~ 24761109 (+)
G14177 NA non-coding upstream 162370 24419358 ~ 24419607 (+)
G14127 eif1ax,EIF1AX,eif1axb,LOC105905255,LOC106563585,LOC106590461,LOC108411992 non-coding upstream 206150 24370326 ~ 24375827 (+)
G14136 NA non-coding upstream 243129 24336970 ~ 24338848 (+)
G14132 NA non-coding upstream 260658 24317800 ~ 24321319 (+)
G13979 lipt2 non-coding upstream 716177 23862215 ~ 23865800 (+)
G14354 NA non-coding downstream 524236 25122083 ~ 25122392 (+)
G14363 NA non-coding downstream 546735 25144582 ~ 25144782 (+)
G14383 NA non-coding downstream 671991 25269838 ~ 25270195 (+)
G14444 NA non-coding downstream 760040 25357887 ~ 25359035 (+)
G14445 NA non-coding downstream 762624 25360471 ~ 25360808 (+)
AMCG00016537 NA other upstream 20170 24479706 ~ 24561807 (+)
G14057 NA other upstream 471795 24080017 ~ 24110182 (+)
AMCG00016506 NA other upstream 636953 23938051 ~ 23945024 (+)
AMCG00016502 NA other upstream 699031 23866267 ~ 23882946 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other upstream 2749829 21782106 ~ 21832148 (+)
G14326 NA other downstream 410115 25007962 ~ 25010687 (+)
AMCG00016558 rpl21,LOC107591224 other downstream 482827 25080674 ~ 25085097 (+)
G14361 NA other downstream 535351 25133198 ~ 25133879 (+)
AMCG00016566 NA other downstream 552501 25150348 ~ 25157461 (+)
AMCG00016584 NA other downstream 772449 25370296 ~ 25404840 (+)

Expression


Co-expression Network