AMCG00016547


Basic Information

Item Value
gene id AMCG00016547
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24700745 ~ 24712231 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016547
ATGCTGTGTGGTGAGCTACATCTCTGGACTGTGACGGCTGCTCTGCGCCAGGGCCTCCCTCTTCTCCTGCTGCTCGTCTGCTGTGCTCCCAGAGGGCACGGGGATTTCTTGGGCAGCTACAGTGCTGAGTTCACAAAAGGATGCAATGATGGCTGGACGCTCAAGGAGACCGTGAACTTGCCCAGTCTTGTGAACCTGACTGTATGCGTGAGTGTCAAGTTGAAGGCGCCAGGAACCTGGACTGCCTTCACCTATAAGGCCGATGAGTCCAAGAACTATGACCTGGCCATCAAGGGCAACCAAAATGGCATACATGTCTGGCTCAAGGGGAAAGATTACAAATTTACAAACATCATGAGTTGGAATATTTGGCATCAGATCTGCCTGAAAGTGAACATGATTGAAAAGGGCTTCACCCTGGATGTCAGTGGGGCCTCGAATTGGACGTCAGTCAGTAACATCACTGTGCCGGGCAGGGGGAAGCTGAGGCTGGGCTGTGGGGCTGGCTTGGATGACTCCGACTCCAAGAAATTGGAGCTGTACCTGTTCCGGCTGTGGAGGGACACCGGGAACCACTCAGCCTGTGAAGACGGGAATGCTGTCGGGTGGAACTCGGACTACTGGGACTTCCAAAACAAGACGCTGGTCTATGATACATCCCTGTCATGTTCTCTTCCCACCTCCGTGTCTCAGACTGCACCTATAGAGTCCAGTACCACCACTGTGACTGCCAGTACATCCCAACCAGTTACTGTGAACACGACTGCAGGGCTGAATGTGACGACCACTCCTCCAGTAAACCAGACCGCAGTGTCACCATTCACCGGGTCAAACTCCACTGCCAGCGCTGCCAACACGCCCACGACACAGGGGCCCACCAACACCACGGGGTCAAACTCCACCACCAGTGCTGCCAACACATCCACGACACAGGGGCCCACCAACACCACGGGGCTGAATGCGATGACCACTCATCCATTAAACCAGACCGCAGTGTCGCCATTCAACGTGTTGAACTCCACCACCAGCAATGCTGCCTACCCGTCTACGACACAGGGGCCCACCAACACCACGGGCGTATACTACAGGGTGGAGATTCAAGTCAATGACACAACCCTCAGCCCGGAAGAAATCCAGGAACTGAGAAACCCTGTATACATTGTCCTGGTGAGTTACAAGGGCTCGCAGTGCCTCCAGCTCCCCTCTGTGCTGTTCGCCGACACCGTGACCATTCATTCTGTGGTTATGCAGATTCTGAAGGCTGTTCTGTCATTATAA

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016547 True 1278 mRNA 0.54 11 24700745 24712231

Neighbor

gene id symbol gene type direction distance location
AMCG00016540 NA coding upstream 17545 24669212 ~ 24683200 (+)
AMCG00016542 LOC107663624 coding upstream 83214 24601700 ~ 24617531 (+)
AMCG00016541 sms,LOC106603082,LOC107700049 coding upstream 102898 24581977 ~ 24597847 (+)
AMCG00016536 NA coding upstream 120561 24569128 ~ 24580184 (+)
AMCG00016529 NA coding upstream 363918 24324950 ~ 24336827 (+)
AMCG00016543 NA coding downstream 101 24712332 ~ 24719584 (+)
AMCG00016544 NA coding downstream 31115 24743346 ~ 24761109 (+)
AMCG00016548 plcxd2,LOC103047596,LOC105905211,LOC107663676,LOC108414136,LOC107671354,LOC108256473,LOC107586725 coding downstream 99619 24811850 ~ 24823512 (+)
AMCG00016549 NA coding downstream 113378 24825609 ~ 24866424 (+)
AMCG00016554 nup58 coding downstream 182871 24895102 ~ 24910014 (+)
G14177 NA non-coding upstream 281138 24419358 ~ 24419607 (+)
G14127 eif1ax,EIF1AX,eif1axb,LOC105905255,LOC106563585,LOC106590461,LOC108411992 non-coding upstream 324918 24370326 ~ 24375827 (+)
G14136 NA non-coding upstream 361897 24336970 ~ 24338848 (+)
G14132 NA non-coding upstream 379426 24317800 ~ 24321319 (+)
G13979 lipt2 non-coding upstream 834945 23862215 ~ 23865800 (+)
G14354 NA non-coding downstream 409852 25122083 ~ 25122392 (+)
G14363 NA non-coding downstream 432351 25144582 ~ 25144782 (+)
G14383 NA non-coding downstream 557607 25269838 ~ 25270195 (+)
G14444 NA non-coding downstream 645656 25357887 ~ 25359035 (+)
G14445 NA non-coding downstream 648240 25360471 ~ 25360808 (+)
AMCG00016537 NA other upstream 138938 24479706 ~ 24561807 (+)
G14057 NA other upstream 590563 24080017 ~ 24110182 (+)
AMCG00016506 NA other upstream 755721 23938051 ~ 23945024 (+)
AMCG00016502 NA other upstream 817799 23866267 ~ 23882946 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other upstream 2868597 21782106 ~ 21832148 (+)
G14326 NA other downstream 295731 25007962 ~ 25010687 (+)
AMCG00016558 rpl21,LOC107591224 other downstream 368443 25080674 ~ 25085097 (+)
G14361 NA other downstream 420967 25133198 ~ 25133879 (+)
AMCG00016566 NA other downstream 438117 25150348 ~ 25157461 (+)
AMCG00016584 NA other downstream 658065 25370296 ~ 25404840 (+)

Expression


Co-expression Network