AMCG00016549


Basic Information

Item Value
gene id AMCG00016549
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24825609 ~ 24866424 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016549
ATGTCTCCCGCTGTTGGTACGGTGCAGAAATGTGACTGTGCCTGGGCACTGCACAAGCCCCATCCCTACACCCTGTACTCTGCCCACATTCTTCAACAATGTGAGTCTGATTGGCCAACCGACCTCTATAAAAAGCAGCAGCGCAAGAACTGCAGCTTCCCGAGAGAGATCAGCCCCCATCAGCCTGCCTTCGCCTCCAAAGCCACGGCTTCCTGTTTACGCAGGAGATCCTTCCCTGCGAGAAACCCGAAGCCGACTCCATCTCCTCTGcctcccccttccctctctgtccgtctctggGAGCTTGCATTCCCGCTGCGGCGCCAGATGTTTGCGGCGCTAAGGGCGTTTGATCTCGACCGAGGCGCACAGACACTGCAGGACGCAGCTGAACACAATGAGGAGAGTCCGGGTCAGCAGAAAGAGGCATCACCCCAAATCAGCCCTCCCTCCACTCCCAAGAGTGCAGCCCTGGACCTGATTGACACAGGGAAGGGGCTGAAGGTGCAGACAGGGCAGCCCCACCTGGTGAGCCTGGGGAGCGGCCGACTCAGTGTGGCCATCACCCTGCTGCCCCTGGAGGAAGGTGTGACTCGAATCGGACGGGAGGATGCACCCACTCCCCAGGACATCACCATCGAGGGCCCAGGCATCGCAGCCGAGCACTGCCGCATCCTGCGCCGGGGGGTCCAGGTCATGCTTGACCCCTGCGGCAACCTCTGCACCCTGGACGGCATGCCTGTGACACAGCCCACCCCGCTCACACAAGggtACACGCTCTGCCTGGGTAAATCCTACTACTTCCGCTTCAACCACCCCGAGGAGGCCAGCCGCATGAAGAGCATGCTGCCCCAGCGGAGCCCCGTGTCCTATGGGTTCAGTCCAGacTATTTGAAACACGGCTCCGAGTTCGGCCAGGGAGGCTCGAGGGCGCGGGGGGTGCGTGGGGGGGCGGAGCTGCAGGACATCGTGGACTCACTGCAGAGGAGGAAGGTGGCTGCCGACCCCAGCCTGCGCTCCAACGGGGAGTACAGCCCCTCCTACTTCACTCTGGCCCAGACGCCCCCTGTCAGCCCCGGCCTGCTGTCCCCCCCGGGCTCACATGGCCAGGACTCTGGCTGGGCGGGGGGGCTGAGGCATTACAGCGCAGACCGCCCCCCACTGTCCATCAAGCTCTCCTCACACCTGTCCTACGGCATGCCCCCCTCGCCACGCCAGCGCTCCCTGCAGGCAGCGGACGCTGCGGACCTGCACTCCagagagcgggagagggagCGGTCCCTCAGCCCGGCAGACCTGCTGTCCTACTCCAGGTCCAGCCCCCGGAACAAGTCCCAGGACAACGTCTTCTTCTCCAGCCCCCTGGATGGCCGCCGCGTGGCCGGGGGTTCGCTGCTGTCCATGTGGAACAGCGCTGCGCTCGGAGACAGCCTGCCTTCCGGGGGCGGAACCGGGCCGGCCAGCATGCCCTCCAGCCCGCGCCTGGCCCGCAGACTCAACCTGCAGGACAGCCAGGCGTTGCAGGCCAGACCAGGCCTCGACTGCGCGCCCAGGCAGAGGAAGTACTCCGCTGGCTCCCTCTCCAGCATGGGGGCGTACAGCCGCTCACTGCCCAGGCTCTATAAGGCGGCTGACAGCCAGATGGCCCCGCTCACCCTGCCCCCCCGCCGCTCCCTGGACAACCGCAGCCGCTCGCCCGCCCCCGAGTCCGCGCACAATGGGGTGGATCTGGATCAGTTCTCCGTGGCCCTGGCCTCCAAGACCTCGCGTGGCCTGGCCTCTGTGGACAGGGACTGCGACGGCTCCGTGACCTCCAGCGTCCCCGTCAGCCCCAGGGTGGCCAAGAAGATGAGCCTGACCTCCCCGGGCTCCCCCTGCGACCTCGAGAGGAACGGCCTGCCTGGCTCATCCCCCGGCCTGGGCGAGAGGAAGTTCTCCTTCGGCAGGAGCGCGGGCCTCAGCCCCGAGGTGGCCGGGGGGGACGCAGCGAAGCCCCCGCCCTTCCGAGAGAGGAGGGGCAGCATCAGCTCGCTCAGTGGCAAGGAGGAGCTGCGGGACTACCACCAGAGGCAGCGGGACGAGCGGCTGCGTGAGCAGGAGGTGGAGAGGCTGGAGCGGCAGCGTCTCGAGACCATCCTCAGTCTGTGCTCAGAGCTGGGCCGGGCGGACCGGGAGCCGGCGGGCAGCGCTGTGGCCGACCTGCAGAAGATCAACAAGGAGCTGGAGAAGCTGCAGCTCTCCGACGAGGAGTCCGCGTCCTCGGACTCCGTCGCCGCCACCGCCTCCCTCGAGAACGGCTACCAGACCCGGCATCCGGCCCCCTACCAGGCCGGCCCTGGGGACGACCgcctgccccccacccctccctccaAACACCACGGGCAGCCGGGACTAGGGTCGCAGTCCCCCTCTGTATCGCTGAGGGGCACCGGGTCCTCCCTGCACCTGCTCAGGAGTAACAAGGGCTCGGAGTCGGCCGGGGACGAGCGGCGGAGGCAGGAGGTAACCCGTGTGGAGGAGGAGAGGTTCCAGGCGGTCCAcaacctggaggagctggagcagaaGATCAAGGACCTGGACAACCAGATGGATGAATCCGTCAGAGAGATGGACATGGAGCGTGCGCTGCTGGAGGGCGAGCAGGATGCTGAGAGCACGCAGCTGCAGCACGAGAAGGAGGTGCTGGAGCAGCTCAACGAGAAGATCGCCGACCTCGAGAGGGACGTGGTGTCAGAGAAGTCCAAGGAGAAAGCAAAGCTTGATgctgaaagggaaaaaatagaGAAGCTGCAGGAGCTTTATACTGAGCAGAAGACCCAGCTTGATAACTGTCCTGAGTCCATGAGGGAGCAATTGCAGCAGCAGCTGAGCAGGGACGCCGACCTGCTGGAGGGGGAGACCAAGCGCTTTGAGGACCTGGAGTTTCAGCAGCTGGAGCGCGAGAGCCGGCAGGACGAGGAGaaggagacacagacacagcagctGCTGCGCGAGATGGCCGAGTACCAGCGCAGCACCGTCTCCAGGAAGGAAAGGCTGTTGACACTGAAGAAGCAGGCCAACCAGATCAGCCAGCAGGCCCAGCGAGACAAGGAGAACTTCCTGAAGGAGAAGAACAACCTGCTGCTGATGCTGCAGAGGgaaaaagaaaatcttgaaCATCTGGAGAAGAGATACACGGAACTGACAGGGGGGCGGGGCTTCCCAGTGAGCCCTGTCAGTATGAAGGAGcatttCCGAAACctggaggagaggaagaagtccgGCAAGGAGGGGACGCACCTGAGCGACACCCTGCCCAGGAAGAAGAGCTCCCCTGCAGTGTCTGCCCACTTCAGCAGCTCCACGCTGGGCCGCAGCATCACGCCCAAGTCTCACCTGCCGCTGGCACAGAGCTCCAGCTGTGGCAGTGTCCTTCCGCGGAGCCTCGCCGTGTCACCCAAGGACTCCCTGGACTCTCGCCGGCTGCACAAAGGGCATAATCACGACCATATGAGCGAGGAGCAGCGGCAGAGACTGACTGAGCTGTGCAGCAGAACGGCATCCGAGTCGAATGTGTATCTGGATTCTTTCCACTATGCTGACAATGGATATAAGGAGCACGCCTACGACACGCTGAGCATCGACAGCTCGGACAGCATGGAGACCAGCATCTCGGCCTGCTCCCCGGACAACATCTCCAGACAGGCTCTGGAGGAGGAGCGGAGGCGGCGGGAGGACCTGGAGAAGAGGCTGCAGGAGGAGACCAGTCGGCGGCAGAAGCTGATCGAGAGGGAGGTCAAACTGCGAGAGAAACAGAGGGCACAGTCTCGACCCCTGACGCGCTACCTCCCAGTGAGGAAGGACGACTTCGACCTGCGCAGCCACATCGAGTCGGCCGGTCACAACACCGAGACCTGCTGCCACGTGTGCCTCACCGAGAAGACCTGCCGCGGCTTCCTGGTCAAGATGGGCGGCAAGATCAAGACGTGGAAGAAGCGCTGGTTCGTCTTCGACAGGAGCCGGAGGACGCTGTCGTACTTCGCAGATAAGCATGAGGCGAAGCTGAAAGGGGTGATATATTTCCAGGCCATTGAGGAAGTGTACTACGATCATTTAAAGAACGCGCACAAGAGCCCGAACCCCTCGCTGACGTTCAGCGTGAAGACCCACGACCGCGTGTACTACATGGTGGCCCCCTCGCCCGAGGCCATGAGGATCTGGATGGACGTCATCGTGACCGGCGCCGAGGGGTACACCCAGTTCATGGTGTAGCCAAGGGGCGAGCAGGGCAGCCGACAACAATGACGACAACGACAACCTTTCGGCAAGAACTGCGCCAGCCAGGGCTCCCACCAGGCCCAGACAGACTCGGACCCGGGCCCTGTGCACCGGTGTCCTTCCATAAGAGATAACGGGTACACTCAGCCAGTCAGCCTGTcctctgtttttactttttatattatcttatttgtatttttgtattattatttccatgCATTTATAAAAGCAGCAGgggaaaaacaaccaaaaaacaagacaaatccCACCCACTTTTCCGTCAGGGGGGAGTCTAAGTCATATGCAATAGAAAACACCTAGAGCTCCTCCCACCCTCGCACCCCGGCTCGCCGGGTGGGGTCTCTGGAAGCCCGTAGCCCTGGGGAGAGTGAGGACAGCAGCCAGAATGGACGGCCCTCGAGGTTTGCCACCCAGGAGCTAGTGCCACCGTCGGAGCCTCTGCCTTTGCTGCAGGAGTTGCTCTGCCTGGACCAGCTGAGCAGTGCGACCAAGcaaccatcatcatcatcttcatagTCATCTTCACCTTTACTGTGCCTTATCGCTACCTGCCAGGCCGATTCAATCCGGCATGTCAGTGACTTCCCATGGCCGGGGTTTTGAGCTGATCAATCCGAGGAATAATCCGGACCTGAGAGGAAATGTCATTGACGTTTCATCCGAGAAGTGTCACTGAGTCcccagccctgtgtgtgttCACTTCCTGTGTCACCATGTGCTTGcgtttcagaaaacattttgacagATGTTGCTCAGGAACAATTGAGAAAAAAGGAGAGGCAGCCAATAATCACACCTGAACCCGCAAAGCATCCTTTAACACGAACTTCAAAAACTGAAcgtccagagagagagagagattcaggATCATGCCACAGCTGCGCATTTTAACCAAAGATATGTCGTATGTGTCGTAACGCAGAGTGCTCAGTCAGGTGACTCCGCCCCTCTGAGGACACAGTTTttggggggggtgtgtgtgtgtgagctgggTGCGGTGGGGTGGGGTGCTAACTAACAAGATACTGATACGGTACTTCGAAGCCTTCCCTGCCCAGTGTCGGAGGTGTTCAGTGCTTAGAGGTATTGGGCCTGGCGCAGGAATGCCGTAATGGCACCGGTGATCAGAGCAGGTGTCCCACCGTGACCTCGGGCAGGTCCAGACCCGAACCCCGGCTCTGTGCCGTTCCATAGGGCTCGCACTATATTTTTATACGTCAAGCATATCATTCGTTAAACCATTATTAACCAGATTGTATCTAAAGTGCTAgctgaatgtttttaaatcctttttttgtatgtattttaagaaaaaagtatatatattttattaatcgcATTCATTCTTGCTTGCATTTATCTATATAAAGCTTTAAACCCTTGTGAATGGCATTACTCACAGGAAGTGCCTTCTTCTGTTAAACATGGGGTGTCAAGCTCCCATCTAGGGGCTTGTGGTGTCTGAGGTTTGTCCCAGCCCAGCTATCGGCAGCTCCATAGTTAAAGCAGCAACGGGATGGGCTTCCCACTTCTCTCCGGGACTCCACAGTGGTGAGGGGACACTATCTTGTGTAAGTCACCGTATTTGATGTTGATACAATTTAATTGGGGGAAATCTTAAATGAGCCCAGCTGAGAAAATCACAGCATTTACAGAGTGATTGAGAGCTCCTGTGggaacaaacaccagcagaCATTGCggcccccaggactggagtcggCCCCCTGCGTTGGCCCCTGTGCGCGCTGTTTTTGTGGCTGTGGCTACTGTGGCGGTGCGGCGGGAGGGTTGGTAACCTCGGTGGCAATGCTGCCATCACACCAATTTAGCCGACATCCTTCCAGTCACTTTTGTTTGTCGTTCTCCCATGACCTTTTGTCAGCAAGCTTAGAAGgtaggtgtgtgtctgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgttgccagtTTACATCTGGGTAGGTATGTTGTTTGCCCGGTGCTGTGTGTGAGACTGACACAGTTGCAGACCTTACCTCCCTGTCCATTATCAATGGGAACTGACCAGTTAATTTCAGCAATAATGAATAAGAATGATTGATAATTAACGGAATGGTCTGTGAGAAGTGTTGAGCACACTGCAcccaaacattttatttcatgaatttatgaaaaacatgaatctcCTTCCAGttctaaatgaaaacaaatcctcCTTGTGTCtgatgtattgtgttttgttttatttcagtatttatgcTATTGTTTATCTTGCATGCTTCgtttatttttgcatacaaAGAAATAAAGCCGAA

Function

GO: NA

KEGG:

id description
K23794 PHLDB; pleckstrin homology-like domain family B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016549 True 6574 mRNA 0.58 22 24825609 24866424

Neighbor

gene id symbol gene type direction distance location
AMCG00016548 plcxd2,LOC103047596,LOC105905211,LOC107663676,LOC108414136,LOC107671354,LOC108256473,LOC107586725 coding upstream 2097 24811850 ~ 24823512 (+)
AMCG00016544 NA coding upstream 64500 24743346 ~ 24761109 (+)
AMCG00016543 NA coding upstream 106025 24712332 ~ 24719584 (+)
AMCG00016547 NA coding upstream 113378 24700745 ~ 24712231 (+)
AMCG00016540 NA coding upstream 142409 24669212 ~ 24683200 (+)
AMCG00016554 nup58 coding downstream 28678 24895102 ~ 24910014 (+)
AMCG00016553 NA coding downstream 45587 24912011 ~ 24920036 (+)
AMCG00016561 NA coding downstream 149616 25016040 ~ 25020221 (+)
AMCG00016559 cdk8 coding downstream 154421 25020845 ~ 25031053 (+)
AMCG00016557 NA coding downstream 168514 25034938 ~ 25049552 (+)
G14177 NA non-coding upstream 406002 24419358 ~ 24419607 (+)
G14127 eif1ax,EIF1AX,eif1axb,LOC105905255,LOC106563585,LOC106590461,LOC108411992 non-coding upstream 449782 24370326 ~ 24375827 (+)
G14136 NA non-coding upstream 486761 24336970 ~ 24338848 (+)
G14132 NA non-coding upstream 504290 24317800 ~ 24321319 (+)
G13979 lipt2 non-coding upstream 959809 23862215 ~ 23865800 (+)
G14354 NA non-coding downstream 255659 25122083 ~ 25122392 (+)
G14363 NA non-coding downstream 278158 25144582 ~ 25144782 (+)
G14383 NA non-coding downstream 403414 25269838 ~ 25270195 (+)
G14444 NA non-coding downstream 491463 25357887 ~ 25359035 (+)
G14445 NA non-coding downstream 494047 25360471 ~ 25360808 (+)
AMCG00016537 NA other upstream 263802 24479706 ~ 24561807 (+)
G14057 NA other upstream 715427 24080017 ~ 24110182 (+)
AMCG00016506 NA other upstream 880585 23938051 ~ 23945024 (+)
AMCG00016502 NA other upstream 942663 23866267 ~ 23882946 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other upstream 2993461 21782106 ~ 21832148 (+)
G14326 NA other downstream 141538 25007962 ~ 25010687 (+)
AMCG00016558 rpl21,LOC107591224 other downstream 214250 25080674 ~ 25085097 (+)
G14361 NA other downstream 266774 25133198 ~ 25133879 (+)
AMCG00016566 NA other downstream 283924 25150348 ~ 25157461 (+)
AMCG00016584 NA other downstream 503872 25370296 ~ 25404840 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location