AMCG00016550


Basic Information

Item Value
gene id AMCG00016550
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24790148 ~ 24800194 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016550
TTCcgatacagatttaaaaaacacacgTCGCTTGAAATTAATGCAAGTCTAATTAACACTCTAAAAAGTGATTTCGggtgttttaaattgaaaacgAGGATTTTAGCTTAACCTGTGTACAGCGGTTCCCCCCGTTTCGCGGTGGAATTTACTTTCTGTTCAAAGTCAAGGCGGGTTTTGAGGATCGGGAAGTTTAACGGCTGCTTGATGACAATAACAACACCAGGATTGTCAGGGCTGTGCGGTCAGGGTTTCAGGATGGATGCGACGACGTGTTTGAAGTCTTTACTCTTGGGCATCAACCAATACAAGAACAACAACTCCGCCACCAACGCCGCACAGCTGCAGAGACAAATAGATGATGTCTCCGGACTGAAGTGTGCCAGGCTGTTCTGCCCTAATCAAGTGCTGCCCAGCGAGTGTGTGGGGGGTCTGGTGGAGCTGGCAGGGGACCCCAACACCAGCCCTACCCTGAGGGGGAAGATCGTCTCCCTGCTGTCTCAGCTAGCCTCAAATGAAGAGACCAGAGAAGCTCTCCACAGCAGCTATGACCTCACCAGCGCCCTGGCGTCCATCATTCACTGCAACAGCACCACCCCCAGTGAGCCCATCGTACTGCAGTGCATCCAGGTTTTACAAAGGGTCACCTACAACACCAGGATATTCCACTCCACTGCCTACATCGACGAGCTCATAGCCTTCCTCATGCACCATATTCAGTCCCCTAATGATGACCTCACAATGCCCTGTCTGGGTCTCCTGGCCAACCTCTGCCGATACAACCTGGCCATTCAGGCTCACATCAAGTCTACGAGTCAAGTGAAGGCTTTCTATCGCACCCTCATCAGCTACTTGGCGCACAACAGCCTGACCGTGGTTGTGTTTGCATTGTCGCTGCTGACCAGTCTGACCCTGAATGAAGAGGTTGGGGAAAAGCTCTTCCATGCAAAGAACATTCACCAGACCTTCCAGCTAATATTCAACATCATTGTCAATGGAGACGGGACTCTGACCAGGAAGTACGCAGTGGACCTGCTGGTGGATCTGCTGAAGAACCCCAAGATTGCGGATTACCTGAGCAGaTATGAACACTTCTCGCTGTGTCTGACCCAGGTGCTGGGCTTGCTGCAGGGGAAGGATCCTGACTCCGCAGCCAAGGTTCTGGAGCTGCTGGTCTCTCTGTGCTCTGTCTCCAGTCTGCGCCGCATCCTCTGTCAGGCCGTGTTCCGGTCCAGCGTGGCCCAGCCCAGGAGCTGCGTGAAGAAGGACAGCCGGGGCCGCACCCCCGAGCCGGGCCTGGCTCTGATCCACTGGGCCAGCCTGCCGCTGCAGGGACCTGACAGTTGCTGCCTGCAAGCCCTGCAGCTTCTCTCTGAGCTGTTTGAGGAAGTGATGGACTCCTCCCTGGGTGCCTCTGTGCAGCCGTTCACCGACCTGCTGCTGCCCGTCCTGCTCGACCTGCTGCAGCCCCCGGAGCTGCCCCTTGAGGAGCAGCTGGCCCGGAGGAACTGCGCGAGGGCCGCCTGCGCCATCGATGAGGCGCTGAAGCTGCAGGTGTCTCGGAGGCTGACGGCCCGGCTGTGCGTGTCCCAGGTGGAGTACCTGTTCTCCAGCAGCAGGATGGACGTGGGCTTCGACTGCCCCATGGCGGAGTCTGACCTCAGCCAAGCTGGGGCCACTGTGGTGCTGAAGATGCTGGACCTGATGAGCCGAGTCAAACAGGTGGTGCCGGACATGGAGACCAGCTTCTACAGAATCCTACAGGACCAGCGGCTTGTCACGCCCCTGTCCGTGGCCCTGACCTCTGACCGGCGGGAGCAGGTCCAGACCGCGCTCCGGATCCTGTTCGAAGCCGCCCCTCTGCCAGACTTCCCCGCCATTGTACTGGGGGAGAGTATAGCCGCCAACAACTCTTACCGGCTGAGGGAGGCGGAGTTCACCCCACGCAGGATGTCAGTGCAGGATCCGGCCCTGGCCACTCTGAGCAGACCCTGCGCGGCTCGGACCCCCAGCGTGGGCAGTGCCACGCAACACAGCATCCACAGCCTCATCGAGAGACTgcagactgggatggagATGAAAGAAGAAATCAAGGATGTGAGGATTTCAGAGATCATGGATGTGTACGAGCAGAAGATCTCGGCCCTGGCGTCAAAGGAGGGCCGCCTGCAGGACCTACTGGAGGCAAAGGCGCTGGCTCTGGCCCAGGCGGACCGGCTCATCGCACAGTACCGCTGCCAGCGTGCCCAGGCCGAGGCCGAGGCGAGGAAGCTGGCGACTCTGCTGAAGGATGCggagaggaggaaggaggagcTGTCCGGGGAGCTGAGCAGCCAGACCCTGGAGGCGGAGAGAGCCCAGGCCGACAtccagcagctgctgcagcacaACGGCCGGCTGCAGGCTGTGGCCGAGGAGCACCAGGCCCTGAGCGCCTCCTACAACGACGTGGTGCTGAAGTTCGGTGAATGTGAGAAGATGCTGCGAGACCTGCAGACTGCTCACAGCTCCTTAAACAAGCAAGCTGAGGCGATGAAGAAGCAAAATGACACTCTGAAACTGCAGCAGGAGAAGATGCTGTCACAGCTCGCAGGCAAGGAGGAGAAGATCCAGGCACTCAGCCAGAACCTGGaagacagagaaaacaaaatatctggctTGGAGCAAAGAATCCAAAGCCTGAAAGAAAAGGCAGAgctgagagagaaacagagcgAAGACATGGAAGAAACAATTGACATCCTGAGGAAAGAGCTGAACAAGACCGAGCTGGCCAGGAAGGAGCTCAGCATCAAGGCGTCCTCCCTGGAGCTGCAGAAGTCGCAGCTGGAGACACGTCTGgagaagagggaggaggagcTGAACAAGCACTCGCACATGATTGCCATGATCCACAGCCTGAGCAGCGGCAAGCTCAAGACTGACAGCGTCAACCTCAGCCTGTAGCTCCTGCTCAGGGGCGCCTCTCATGCCCTGCCCCTTGCACTGCTGCCCCCGCACTGCCGGCCCGGGTGTGTGACTCACACTGCGGTGCAACCCAGAACTGAACACGGTCGACATGGGCCTGTAGAGCCCGCTGGAGAGATGTGGTCCCGGGCGCTGCCAGGGCTGGAAGACTGACTGAGAAGGCTGCCTCCCACACCCTGGCACTGCTGCAACGGCACTGTCTGTGACTCTCCCTGAGATTAGATTTGTGACTCGCAGCCTCCCTCAGCCTCCGACAGCCTCGGCGGGGGCCTGTGACCAGAGCGGCTGCGCATTGAGTCCCCTCTGCATCAGATTTAGTCACGTGTCCCATCATCCAAATGTCTGTTCCATTAGGAAAACAGAAAGGGAAGAGACAGGTTAGAGCAGACCCAGATTGTGTAAGAGGTGGTATATAAAGGTATTTAAGATAAAGTCGTACATCATGTTTGAACAGAAGTTGAGTGTCATCTCAGCCTGACCATTCTTTTTAATGGAAATTTTATCTTTCTTCATCTGTTTCCGACACATTTCtctaaactgtatttttatatcaaatgtgcaaaataGTAATGTCTCTTTGTGTATTCACTCTCCCACGCATTCCTCTTTTTACTATGGCctacttttcttttatttaataaacctCAGATGTCTCCGATGGTTCACTATGTAAGTTAATGCTCTGGGACCATGACTGGCATCTTTTAAGTGGTAAAGTGAAACATTTATTGAATTACcaatatgtgtttaaaaaaccAATCAAACCAGGAAATCAAATCACTGGGAGTTGACAgagtgtatttaaatggaagatGCTTAATCCTTTGAGGAGCTGGTGCGCTTACGCAACCGGGATGATTTTACATAACTGAAGTGCAGGCGGCCACGCCCTCTGCCCTAATCTGAGCCACCATATGGATAACGTTAGCAAGATAATATAGATTTAGGGCAGCTTGTTAACATACACTGGATTaggggagaaaacaaaaagcagatgttttcTTGGTTGAGAGTGGCTGCCCAGACTGGGGCTCCTGAGGAACCCCGGGCCAAGTGAACAGGGCGTCCTGTCTGGTGGACTCCCTCGTCTGCAGAGCTGCCGGCGGTCGTCACCATCGTTTGCAGtggaaaatgcaaatacatttcgATCGATGTAAATTAACGGGGTGGAAAGtgctttagtttgttttgcaataaagACATCCAACTGTGG

Function

GO:

id name namespace
GO:0005694 chromosome cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016550 True 4180 mRNA 0.55 22 24790148 24800194

Neighbor

gene id symbol gene type direction distance location
AMCG00016545 NA coding downstream 3738 24762569 ~ 24786410 (-)
AMCG00016546 LOC108276628,LOC107663623 coding downstream 51026 24721189 ~ 24739122 (-)
AMCG00016539 NA coding downstream 240023 24548377 ~ 24550125 (-)
AMCG00016534 NA coding downstream 397293 24375867 ~ 24392855 (-)
AMCG00016535 eif1ax,EIF1AX,eif1axb,LOC105905255 coding downstream 414341 24372069 ~ 24375807 (-)
AMCG00016551 NA coding upstream 2542 24802736 ~ 24809912 (-)
AMCG00016552 NA coding upstream 75670 24875864 ~ 24878227 (-)
AMCG00016555 mtmr6,LOC104951663 coding upstream 83709 24883903 ~ 24894419 (-)
AMCG00016556 NA coding upstream 130623 24930817 ~ 24953633 (-)
AMCG00016564 LOC107584968 coding upstream 172853 24973047 ~ 25001455 (-)
G14245 NA non-coding downstream 9882 24716726 ~ 24780266 (-)
G14222 NA non-coding downstream 105613 24683065 ~ 24684535 (-)
G14218 NA non-coding downstream 171803 24615787 ~ 24618345 (-)
G14214 NA non-coding downstream 183827 24606108 ~ 24606321 (-)
G14213 NA non-coding downstream 188141 24601698 ~ 24602007 (-)
G14311 NA non-coding upstream 104927 24905121 ~ 24906546 (-)
G14400 NA non-coding upstream 321896 25122090 ~ 25122375 (-)
G14472 NA non-coding upstream 604701 25404895 ~ 25405101 (-)
G14487 rpl19,LOC101068736,LOC103368168 non-coding upstream 716795 25516989 ~ 25520096 (-)
G14496 NA non-coding upstream 742852 25543046 ~ 25545725 (-)
AMCG00016538 smpx,LOC107721880,LOC107590224,LOC107663668,LOC107705278 other downstream 223192 24553692 ~ 24566956 (-)
AMCG00016531 NA other downstream 466690 24309256 ~ 24323458 (-)
AMCG00016505 NA other downstream 904890 23864581 ~ 23885258 (-)
AMCG00016504 NA other downstream 927409 23841062 ~ 23862739 (-)
G13969 NA other downstream 1089893 23699149 ~ 23700255 (-)
G14305 NA other upstream 80954 24881148 ~ 24882098 (-)
AMCG00016562 rnf6 other upstream 207780 25007974 ~ 25015343 (-)
G14392 NA other upstream 280374 25080568 ~ 25083699 (-)
AMCG00016579 NA other upstream 464578 25264772 ~ 25277478 (-)
AMCG00016591 NA other upstream 613122 25413316 ~ 25420371 (-)

Expression


Co-expression Network